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aqlaboratory / openfold-3 Public

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Fork 121
Star 752

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Issues 31
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Reduce peak memory usage#248

Draft

GMNGeoffrey wants to merge 6 commits into

aqlaboratory:mainaqlaboratory/openfold-3:mainfrom

GMNGeoffrey:mem-reductionGMNGeoffrey/openfold-3:mem-reductionCopy head branch name to clipboard

Conversation Commits6 (6)Checks Files changed

Draft

Reduce peak memory usage#248
GMNGeoffrey wants to merge 6 commits into
aqlaboratory:mainfrom
GMNGeoffrey:mem-reduction

Commits

Commits on Jun 2, 2026

Use `torch.cdist` in `get_token_frame_atoms`
GMNGeoffrey
committed
Use inplace bool masks in `get_token_frame_atoms`
GMNGeoffrey
committed
Only move zij to GPU in slices for PAE/PDE computation
GMNGeoffrey
committed
Defer PDE/PAE/distogram move-to-GPU until consumed
GMNGeoffrey
committed
template_embedders: fold linear projections in-place
GMNGeoffrey
committed

Commits on Jun 8, 2026

Chunk diffusion_conditioning embedding
GMNGeoffrey
committed

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