diff --git a/.github/workflows/build_and_test.yml b/.github/workflows/build_and_test.yml
index cd2f01ba7e846..0654b2c47061d 100644
--- a/.github/workflows/build_and_test.yml
+++ b/.github/workflows/build_and_test.yml
@@ -155,12 +155,11 @@ jobs:
     - name: Install Python packages (Python 3.6 and PyPy3)
       if: contains(matrix.modules, 'pyspark')
       # PyArrow is not supported in PyPy yet, see ARROW-2651.
-      # TODO(SPARK-32247): scipy installation with PyPy fails for an unknown reason.
       run: |
         python3.6 -m pip install numpy pyarrow pandas scipy xmlrunner
         python3.6 -m pip list
         # PyPy does not have xmlrunner
-        pypy3 -m pip install numpy pandas
+        pypy3 -m pip install numpy pandas scipy
         pypy3 -m pip list
     - name: Install Python packages (Python 3.8)
       if: contains(matrix.modules, 'pyspark') || (contains(matrix.modules, 'sql') && !contains(matrix.modules, 'sql-'))