R2DT API Client

Features

• Access to the R2DT API via Python
• Display R2DT widget in Jupyter Notebook

Requirements

• Python 3.9+
• pdm 2.0.0+

Installation

You can install R2DT API Client via [pip] from [PyPI]:

$ pip install r2dt-client

Usage

Example usage in the code:

from time import sleep
from r2dt_client import setup, submit, update_status_for, fetch_results_for

setup(email="YOUR_EMAIL")

job = submit(
    ">S box leader))\nCTCTTATCGAGAGTTGGGCGAGGGATTTGGCCTTTTGACCCCAAAAGCAACCGACCGTAATTCCATTGTGAAATGGGGCGCATTTTTTTCGCGCCGAGACGCTGGTCTCTTAAGGCACGGTGCTAATTCCATTCAGATCTGATCTGAGAGATAAGAG")
while not job.done:
    update_status_for(job)
    sleep(5)

fetch_results_for(job)
print(job.results['fasta'])

Using the widget via Jupyter Notebook:

!pip install r2dt_client

from r2dt_client import setup, draw

setup(email="YOUR_EMAIL")
draw(
    ">S box leader))\nCTCTTATCGAGAGTTGGGCGAGGGATTTGGCCTTTTGACCCCAAAAGCAACCGACCGTAATTCCATTGTGAAATGGGGCGCATTTTTTTCGCGCCGAGACGCTGGTCTCTTAAGGCACGGTGCTAATTCCATTCAGATCTGATCTGAGAGATAAGAG")

License

Distributed under the terms of the Apache 2.0, R2DT API Client is free and open source software.

Issues

If you encounter any problems, please file an issue along with a detailed description.