diff --git a/docs/examples.md b/docs/examples.md new file mode 100644 index 0000000..1b8ad59 --- /dev/null +++ b/docs/examples.md @@ -0,0 +1,55 @@ +# Example Repositories Using AI4Curation Setup + +## Ontology Repositories + +### Mondo Disease Ontology +**Repository**: [monarch-initiative/mondo](https://github.com/monarch-initiative/mondo) + +**Key Files to Explore**: +- [ai-agent.yml](https://github.com/monarch-initiative/mondo/blob/master/.github/workflows/ai-agent.yml) - GitHub Actions workflow configuration +- [CLAUDE.md](https://github.com/monarch-initiative/mondo/blob/master/CLAUDE.md) - Agent instructions +- [.config/goose/config.yaml](https://github.com/monarch-initiative/mondo/tree/master/.config/goose) - Goose configuration + +**Agent Platform**: Goose (via dragon-ai-agent) + +**Agent Activity**: [Search for @dragon-ai-agent mentions and PRs](https://github.com/monarch-initiative/mondo/issues?q=involves%3Adragon-ai-agent) + +### Cell Ontology (CL) +**Repository**: [obophenotype/cell-ontology](https://github.com/obophenotype/cell-ontology) + +**Key Files to Explore**: +- CLAUDE.md - Agent instructions + +**Agent Platform**: Goose (via dragon-ai-agent) + +**Agent Activity**: [Search for @dragon-ai-agent mentions and PRs](https://github.com/obophenotype/cell-ontology/issues?q=involves%3Adragon-ai-agent) + +### Uberon Anatomy Ontology +**Repository**: [obophenotype/uberon](https://github.com/obophenotype/uberon) + +**Key Files to Explore**: +- [PR #3580](https://github.com/obophenotype/uberon/pull/3580) - GitHub Copilot integration + +**Agent Platform**: GitHub Copilot, Goose + +**Agent Activity**: [Search for @dragon-ai-agent mentions and PRs](https://github.com/obophenotype/uberon/issues?q=involves%3Adragon-ai-agent) + +### EFO (Experimental Factor Ontology) +**Repository**: [EBISPOT/efo](https://github.com/EBISPOT/efo) + +**Agent Platform**: GitHub Copilot + +**Agent Activity**: [Search for Copilot activity](https://github.com/EBISPOT/efo/issues?q=author%3Aapp%2Fcopilot) + +## Documentation Repositories + +### AI4Curators Documentation +**Repository**: [ai4curation/aidocs](https://github.com/ai4curation/aidocs) (this repository) + +**Key Files to Explore**: +- `.github/workflows/` - GitHub Actions for AI agent integration +- `CLAUDE.md` - Repository-specific instructions + +**Agent Platform**: Claude Code, Goose + +**Agent Activity**: [Search for @dragon-ai-agent mentions and PRs](https://github.com/ai4curation/aidocs/issues?q=involves%3Adragon-ai-agent) diff --git a/mkdocs.yml b/mkdocs.yml index 159af61..cc59b82 100644 --- a/mkdocs.yml +++ b/mkdocs.yml @@ -37,6 +37,7 @@ plugins: nav: - Home: index.md - FAQ: faq.md + - Examples: examples.md - Curator how-tos: - Instruct the GitHub agent: how-tos/instruct-github-agent.md - Make identifiers hallucination-resistant: how-tos/make-ids-hallucination-resistant.md