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Add README.md and make workflow more easily reproducible (#1)
1 parent 0352092 commit 328434c

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‎.circleci/config.yml

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echo "export GCLOUD_SERVICE_KEY=\$(echo \$ENCODED_GOOGLE_CREDENTIALS | base64 --decode)" >> $BASH_ENV
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- gcp-gcr/gcr-auth
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- run: make build
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- run: make download_input_data
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- run: make test
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workflows:

‎Makefile

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build:
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docker build -f docker/Dockerfile -t shield:main .
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download_input_data:
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./download_input_data.sh
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test:
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docker/docker_run.sh \
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-v $(shell pwd)/input_data:/input_data \
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-v $(shell pwd)/tests:/tests \
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shield:main pytest -vv /tests/test_regression.py
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test_regtest_reset:
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docker/docker_run.sh \
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-v $(shell pwd)/input_data:/input_data \
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-v $(shell pwd)/tests:/tests \
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shield:main pytest -vv /tests/test_regression.py --regtest-reset
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‎README.md

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# SHiELD-minimal
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This repository contains a workflow that will build and test the latest
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public version of SHiELD in a docker image. To try things out, first make sure
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to download and extract the required input data for the tests from [here on
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Google
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Drive](https://drive.google.com/file/d/1YpPkW0rfHWrMs4fL2pdtsq1-vfCcMJP7/view?usp=sharing)
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into the top-level directory.
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```
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$ tar -xvf input_data.tar
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```
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Then initialize the submodules, build the docker image, and run the tests:
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```
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$ make update_submodules
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$ make build
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$ make test
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```
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The tests may or may not pass depending on the build. Try this out several
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times running
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```
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$ docker system prune --all
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```
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in between builds to clear out the docker cache and build fresh each time. One
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can observe that the tests sometimes pass and sometimes fail. For a
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particular docker image, however, the model always seems to produce the same
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result (as verified by the test that repeatedly runs the model 5 times to see
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that each time it produces the same result for a given build); it is only when
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we completely rebuild the image that results have the potential to change,
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suggesting this is a build-time issue.
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This workflow is carried out in CircleCI and if we re-run the workflow from
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scratch several times, we can reproduce this behavior.

‎download_input_data.sh

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#!/bin/bash
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ROOT=input_data
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OROGRAPHIC_FORCING=$ROOT/orographic_forcing/C12
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FORCING=$ROOT/forcing
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INITIAL_CONDITIONS=$ROOT/initial_conditions
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mkdir -p $OROGRAPHIC_FORCING
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mkdir -p $FORCING
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mkdir -p $INITIAL_CONDITIONS
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gsutil -m -u vcm-ml cp gs://vcm-fv3config/data/orographic_data/v1.0/C12/* $OROGRAPHIC_FORCING/
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gsutil -m -u vcm-ml cp -r gs://vcm-ml-experiments/spencerc/2023-09-13-SHiELD-forcing-data/* $FORCING/
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gsutil -m -u vcm-ml cp gs://vcm-fv3config/data/initial_conditions/gfs_c12_example/v1.0/* $INITIAL_CONDITIONS/
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gsutil -m -u vcm-ml cp gs://vcm-fv3config/config/field_table/TKE-EDMF/v1.1/field_table $ROOT/

‎tests/_regtest_outputs/test_regression.test_regression_fortran.out

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‎tests/_regtest_outputs/test_regression.test_reproducibility.out

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‎tests/default.yml

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@@ -371,7 +371,7 @@ namelist:
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cnvgwd: true
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debug: false
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do_deep: true
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do_ocean: true
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do_ocean: false
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dspheat: true
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fhcyc: 24.0
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fhlwr: 3600.0

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