DESCRIPTION

Package: tailfindr
Type: Package
Title: Poly(A) Tail Length Estimator for Oxford Nanopore RNA and DNA Reads
Version: 1.4
Authors@R: c(
  person(given = "Adnan", family = "Niazi", email = "adnaniazi@gmail.com", role = c("aut", "cre", "cph")),
  person(given = "Maximilian", family = "Kruise", email = "Maximilian.Krause@uib.no", role = c("dtc")),
  person(given = "Kornel", family = "Labun", email = "kornellabun@gmail.com", role = c("ctb")),
  person(given = "Florian", family = "Muller", email = "florianisch.flo@googlemail.com ", role = c("ctb")),
  person(given = "Evind", family = "Valen", email = "eivind.valen@gmail.com", role = c("ths", "fnd")) )
Maintainer: Adnan Niazi <adnaniazi@gmail.com>
Description: An alignment-free tool to estimate poly(A)/poly(T) tail lengths in 1D Oxford nanopore sequencing reads. It can handle reads from basecalled with Albacore or Guppy using the standard or the newest 'flipflop' model. It can work with single as well as multi-fast5 files. Currently, tailfindr can estimate poly(A) tail length in 1D RNA nanopore reads, and both poly(A) and poly(T) lengths in 1D DNA nanopore reads.
License: GPL-3 + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
Depends: R (>= 3.5.0)
SystemRequirements: libhdf5 (>= 1.8.13)
biocViews:
Imports: 
    rbokeh (>= 0.4.2),
    Biostrings (>= 2.48.0),
    ggplot2 (>= 3.0.0), 
    stats (>= 3.0.0), 
    dplyr (>= 0.7.6),
    hdf5r (>= 1.0.0),
    foreach (>= 1.4.4),
    doParallel (>= 1.0.11),
    parallel (>= 3.5.0),
    doSNOW (>= 1.0.16),
    data.table (>= 1.11.4),
    tibble (>= 1.4.2),
    purrr (>= 0.2.5),
    psych (>= 1.8.12),
    crayon (>= 1.3.4),
    cli (>= 1.0.1),
    tidyr (>= 0.8.3),
    Rsamtools (>= 2.0.1),
    magrittr (>= 1.5)
Suggests: 
    testthat,
    knitr,
    rmarkdown
VignetteBuilder: knitr