Post-release 21 Documentation updates

[christinerogers]

(non-exhaustive list, in progress)
Needs cross-checking with new Readmes from Wiki-revamp

Things moved under docs/ RaisinBread -> broken links

• public instruments removed / moved to Raisinbread

• bmi.linst which used to be under docs/instruments/

• MRI Parameter form which is required(?) for the upcoming QC Browser (can't load without)

• requires updating the Behavioural Setup Guide... probably other pages too.

• readmes : e.g. https://github.com/aces/Loris/blob/master/LORIS_react.README.md

• [Doc] Update all docs (incl Contributing.md) for 22.0 release - branching changes/caveats  #5392 broken links in Contributing.md,
• several wiki pages
• other places in the Repo

Install process Readme(s):

• [install] tell users to run make in Readme, update wiki #5197 Makefile needs to be run for fresh installs. not composer (? TBC) : add to Readmes, wiki
• [README] Add nodejs as a system requirement #5017 NodeJS version matters (PR sent for main readme only)
• [install] Update CentOS install Readme for the 21 release #5018 CentOS 21.0.0 specific updates (including NodeJS)

Reliability module removed : Remove all mentions #4596

• Code: statistics/js/form_stats_reliability.js still exists (technically this is Stats module code cleanup, not Reliability module
• config.xml Remove references to deleted Reliability module #5433

Training module removed - Documentation to be updated:

• Examiner module readme : remove mentions of Training module

Reactified modules:

• Remove references to "Show Data" buttons in documentation #5410 Remove mentions of "Show data" button if no longer relevant
  e.g. 15 markdown files files including:
• Imaging Browser Help text
• (very minor) 5 Test plans to be updated

Tools scripts moved to a different directory

• Wiki / wiki-readmes to be updated

CenterID -> Registration Center ID #4078

• wiki / wiki readmes
• Module Readmes
• installers for Loris, Loris-MRI
• Loris-MRI documentation
• any scripts? any help text?

Gender renamed to sex

• Wiki / Wiki-readmes to be updated
• search help text
• search module readmes (unlikely)
• in the Codebase Change remaining instances of "gender" to "sex" #5874 (local variable names, e.g.)
• API release - because it was stable, per Dave's 5874 comment

Config Path cleanup: #4314

Double-check the wiki, etc.

UseProjects - remove all mentions killed #4496

• 1 case in wiki

[johnsaigle]

Last point should be addressed by #5433

[johnsaigle]

Training module removed - update Module Readmes:
Examiner module readme : remove mentions of Training module

@sruthymathew123 Would you be able to update this during release testing for v22? Asking because you're assigned to test it.

[johnsaigle]

Gender renamed to sex

All points resolved by #5874 except for GitHub wiki files.

[stale]

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.

[stale]

The Stale label is being removed automatically because some activity has occurred or because the developers have decided that this pull request is important and should not continue to be overlooked.

[johnsaigle]

@christinerogers I think this is resolved except for the RegistrationCenterID references in the (deprecated) wiki.

Are you in favour of closing this and creating a separate ticket for this final update?

[johnsaigle]

I'm going to close this for now. The remaining items exist in the GitHub Wiki which is in the process of being deprecated. As we rewrite these pages for the new ReadTheDocs wiki we should be able to catch outdated sections during code review.