-
Welcome, {$username}.
+
Welcome, {$username}!
Last login: {$last_login}
{if !is_null($project_description)}
{$project_description}
diff --git a/modules/data_release/README.md b/modules/data_release/README.md
index b5927a21a02..9678ea2e209 100644
--- a/modules/data_release/README.md
+++ b/modules/data_release/README.md
@@ -44,15 +44,8 @@ Note: At the moment, the only way to remove a user's permission to a specific
## Configurations
-- Data release uploads are stored under the
- `modules/data_release/user_uploads directory`, which can easily be symlinked
- to another location if necessary. Note that this directory needs to be
- writable by your web server.
+- `dataReleasePath` designates the target location for release file uploads.
## Other notes:
-- Uploads are stored under the `modules/data_release/user_uploads` directory which
-can easily be symlinked to another location if necessary, ensure that it can be written
-to by your web server.
-- Remove permissions by deleting rows in the data_release_permissions table.
- Upload date will automatically be added during file upload.
diff --git a/modules/data_release/ajax/FileUpload.php b/modules/data_release/ajax/FileUpload.php
index 908718401ec..68a94df3f09 100644
--- a/modules/data_release/ajax/FileUpload.php
+++ b/modules/data_release/ajax/FileUpload.php
@@ -12,8 +12,10 @@
* @link https://github.com/aces/Loris
*/
-$DB = \Database::singleton();
-$user = \User::singleton();
+$factory = \NDB_Factory::singleton();
+$DB = $factory->database();
+$user = $factory->user();
+$config = $factory->config();
if ($_POST['action'] == 'upload'
&& $user->hasPermission("data_release_upload")
@@ -21,27 +23,26 @@
$fileName = $_FILES["file"]["name"];
$version = $_POST['version'];
$upload_date = date('Y-m-d');
- $base_path = __DIR__ . "/../user_uploads/";
- $factory = NDB_Factory::singleton();
$settings = $factory->settings();
$baseURL = $settings->getBaseURL();
+ $path = \Utility::appendForwardSlash($config->getSetting('dataReleasePath'));
- if (!file_exists(__DIR__ . "/../user_uploads/")) {
+ if (!file_exists($path)) {
error_log(
- "ERROR: File upload failed. Default user_uploads"
+ "ERROR: File upload failed. Upload"
. " directory not found."
);
header("HTTP/1.1 500 Internal Server Error");
- } elseif (!is_writable(__DIR__ . "/../user_uploads/")) {
+ } elseif (!is_writable($path)) {
error_log(
- "File upload failed. Default user_uploads directory"
+ "File upload failed. Upload directory"
. " does not appear to be writeable."
);
header("HTTP/1.1 500 Internal Server Error");
} else {
- $target_path = $base_path . $fileName;
+ $target_path = $path . $fileName;
if (move_uploaded_file($_FILES["file"]["tmp_name"], $target_path)) {
$DB->insert(
'data_release',
@@ -82,5 +83,3 @@
header("HTTP/1.1 400 Bad Request");
echo "There was an error uploading the file";
}
-
-
diff --git a/modules/data_release/ajax/GetFile.php b/modules/data_release/ajax/GetFile.php
index cc29403c89b..28bc800653a 100644
--- a/modules/data_release/ajax/GetFile.php
+++ b/modules/data_release/ajax/GetFile.php
@@ -12,7 +12,12 @@
* @link https://github.com/aces/Loris
*/
-$user =& User::singleton();
+
+$factory = \NDB_Factory::singleton();
+$db = $factory->database();
+$user = $factory->user();
+$config = $factory->config();
+$path = \Utility::appendForwardSlash($config->getSetting('dataReleasePath'));
$File = $_GET['File'];
// Make sure that the user isn't trying to break out of the $path by
@@ -23,13 +28,12 @@
header("HTTP/1.1 400 Bad Request");
exit(4);
}
-$FullPath = __DIR__ . "/../user_uploads/$File";
+$FullPath = $path . $File;
if (!file_exists($FullPath)) {
error_log("ERROR: File $FullPath does not exist");
header("HTTP/1.1 404 Not Found");
exit(5);
}
-$db =& Database::singleton();
$fileID = $db->pselectOne(
"SELECT ID FROM data_release WHERE "
. "file_name=:fn",
diff --git a/modules/document_repository/php/files.class.inc b/modules/document_repository/php/files.class.inc
index 5204a565dc0..6c5f42df096 100644
--- a/modules/document_repository/php/files.class.inc
+++ b/modules/document_repository/php/files.class.inc
@@ -67,6 +67,10 @@ class Files extends \NDB_Page
*/
public function handle(ServerRequestInterface $request) : ResponseInterface
{
+ $config = \NDB_Factory::singleton()->config();
+ $path = \Utility::appendForwardSlash(
+ $config->getSetting("documentRepositoryPath")
+ );
switch ($request->getMethod()) {
case "POST":
if ($this->uploadDocFile($request)) {
@@ -107,7 +111,7 @@ class Files extends \NDB_Page
$name = \User::singleton()->getUsername();
$record = urldecode(basename($request->getUri()->getPath()));
if (!is_numeric($record)) {
- $file = __DIR__ . "/../user_uploads/$name/$record";
+ $file = $path. "$name/$record";
return (new \LORIS\Http\Response())
->withHeader('Content-Type', 'application/octet-stream')
->withHeader(
@@ -171,14 +175,18 @@ class Files extends \NDB_Page
*/
function deleteFile($rid): void
{
+ $factory = \NDB_Factory::singleton();
+ $DB = $factory->database();
+ $user = $factory->user();
+ $config = $factory->config();
+ $path = \Utility::appendForwardSlash(
+ $config->getSetting("documentRepositoryPath")
+ );
// create Database object
- $DB = \Database::singleton();
- $user = \User::singleton();
$Notifier = new \NDB_Notifier(
"document_repository",
"delete"
);
- $factory = \NDB_Factory::singleton();
$baseURL = $factory->settings()->getBaseURL();
$fileName = $DB->pselectOne(
"SELECT File_name FROM document_repository
@@ -205,7 +213,7 @@ class Files extends \NDB_Page
$Notifier->notify($msg_data);
}
- $path = __DIR__ . "/../user_uploads/$dataDir";
+ $path = $path.$dataDir;
if (file_exists($path)) {
unlink($path);
@@ -349,6 +357,9 @@ class Files extends \NDB_Page
$baseURL = $factory->settings()->getBaseURL();
$config = $factory->config();
$base = $config->getSetting('base');
+ $path = \Utility::appendForwardSlash(
+ $config->getSetting("documentRepositoryPath")
+ );
$name = \User::singleton()->getUsername();
$DB = \Database::singleton();
$category = $req['category']; // required
@@ -368,7 +379,7 @@ class Files extends \NDB_Page
$fileSize = $uploadedFile->getSize();
$fileName = $uploadedFile->getClientFileName();
$fileType = pathinfo($fileName, PATHINFO_EXTENSION);
- $uploadPath = "$base/modules/document_repository/user_uploads/$name/";
+ $uploadPath = $path.$name."/";
// $category is a string representation of an ID, and so should be at
// least equal to zero.
if (intval($category) < 0) {
diff --git a/modules/instrument_manager/README.md b/modules/instrument_manager/README.md
index 5707af9cb3c..f283ed2e3f5 100644
--- a/modules/instrument_manager/README.md
+++ b/modules/instrument_manager/README.md
@@ -49,5 +49,6 @@ directories (to write the instrument itself, and instrument table
patch respectively.)
In order to automatically source the SQL patch and fully configure
-LINST instruments, the LORIS `quatUser` and `quatPassword` configuration
+LINST instruments, the LORIS `adminUser` and `adminPassword` configuration
must be set to a user which has the MySQL `CREATE TABLE` permission.
+
diff --git a/modules/instrument_manager/jsx/instrumentManagerIndex.js b/modules/instrument_manager/jsx/instrumentManagerIndex.js
index 83f570899c4..9d475c2bcc0 100644
--- a/modules/instrument_manager/jsx/instrumentManagerIndex.js
+++ b/modules/instrument_manager/jsx/instrumentManagerIndex.js
@@ -111,7 +111,7 @@ class InstrumentManagerIndex extends Component {
return (
Instrument installation is not possible given the current server
- configuration; the LORIS 'quatUser' is not configured properly.
+ configuration; the LORIS 'adminUser' is not configured properly.
File upload is still possible but instruments will need to be
installed manually
diff --git a/modules/instrument_manager/php/instrument_manager.class.inc b/modules/instrument_manager/php/instrument_manager.class.inc
index c815f53608a..2459d4e9295 100644
--- a/modules/instrument_manager/php/instrument_manager.class.inc
+++ b/modules/instrument_manager/php/instrument_manager.class.inc
@@ -169,7 +169,7 @@ class Instrument_Manager extends \NDB_Menu_Filter
* Instead, inform users that an administrator must install it
* on their behalf.
* This should only happen for users on a system where automatic
- * installation is disabled (ie. has no quatUser).
+ * installation is disabled (ie. has no adminUser).
*/
return new \LORIS\Http\Response\JSON\Conflict(
self::FILE_ALREADY_EXISTS
@@ -189,7 +189,7 @@ class Instrument_Manager extends \NDB_Menu_Filter
);
if (!$this->isQuatUserConfigured()) {
- // If no quatUser is configured, automatic installation is not
+ // If no adminUser is configured, automatic installation is not
// possible, so this is the last step.
return (new \LORIS\Http\Response())
->withStatus(200, 'OK')
@@ -224,8 +224,8 @@ class Instrument_Manager extends \NDB_Menu_Filter
exec(
"mysql".
" -h" . escapeshellarg($db_config['host']).
- " -u" . escapeshellarg($db_config['quatUser']).
- " -p" . escapeshellarg($db_config['quatPassword']).
+ " -u" . escapeshellarg($db_config['adminUser']).
+ " -p" . escapeshellarg($db_config['adminPassword']).
" " . escapeshellarg($db_config['database']).
" < " . $this->path . "project/tables_sql/".
escapeshellarg($table_name . '.sql'),
@@ -591,21 +591,21 @@ class Instrument_Manager extends \NDB_Menu_Filter
}
/**
- * Return whether the quatUser is properly configured, ie. credentials are
+ * Return whether the adminUser is properly configured, ie. credentials are
* set and are valid.
- * The quatUser is a MySQL user with CREATE table permissions.
+ * The adminUser is a MySQL user with CREATE table permissions.
* `empty` is used instead of `isset` as blank values in the config file
* are still considered set.
*
- * @return bool True if a quatUser is configured properly. False if not.
+ * @return bool True if a adminUser is configured properly. False if not.
*/
protected function isQuatUserConfigured() : bool
{
$db = $this->factory->database();
$db_config = $this->factory->config()->getSetting('database');
- $credentials_set = !empty($db_config['quatUser'])
- && !empty($db_config['quatPassword']);
+ $credentials_set = !empty($db_config['adminUser'])
+ && !empty($db_config['adminPassword']);
if (!$credentials_set) {
return false;
}
@@ -615,8 +615,8 @@ class Instrument_Manager extends \NDB_Menu_Filter
try {
$connected = $db->connect(
$db_config['database'],
- $db_config['quatUser'],
- $db_config['quatPassword'],
+ $db_config['adminUser'],
+ $db_config['adminPassword'],
$db_config['host'],
false
);
diff --git a/modules/issue_tracker/ajax/EditIssue.php b/modules/issue_tracker/ajax/EditIssue.php
index 662af475f2c..dd478f7e33c 100644
--- a/modules/issue_tracker/ajax/EditIssue.php
+++ b/modules/issue_tracker/ajax/EditIssue.php
@@ -577,7 +577,7 @@ function getIssueFields()
//get field options
if ($user->hasPermission('access_all_profiles')) {
// get the list of study sites - to be replaced by the Site object
- $sites = Utility::getAssociativeSiteList();
+ $sites = Utility::getSiteList();
} else {
// allow only to view own site data
$sites = $user->getStudySites();
diff --git a/modules/survey_accounts/php/addsurvey.class.inc b/modules/survey_accounts/php/addsurvey.class.inc
index b9bffb8c062..a76b60ec74d 100644
--- a/modules/survey_accounts/php/addsurvey.class.inc
+++ b/modules/survey_accounts/php/addsurvey.class.inc
@@ -110,9 +110,13 @@ class AddSurvey extends \NDB_Form
$reminder = " already exists for given candidate for visit ";
foreach ($instrument_list as $instrument) {
if ($values['Test_name'] == $instrument['Test_name']) {
+ $instrument_instance = \NDB_BVL_Instrument::factory(
+ $instrument['Test_name']
+ );
return array(
- 'Test_name' => "Instrument ". $values['Test_name'].
- $reminder. $values['VL'],
+ 'Test_name' => "Instrument ".
+ $instrument_instance->getFullName().
+ $reminder. $values['VL'],
);
}
}
diff --git a/package-lock.json b/package-lock.json
index e5e72e0daae..f8610765697 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -20,499 +20,69 @@
"output-file-sync": "^2.0.0",
"slash": "^2.0.0",
"source-map": "^0.5.0"
-<<<<<<< HEAD
-=======
+ }
+ },
+ "@babel/code-frame": {
+ "version": "7.5.5",
+ "resolved": "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.5.5.tgz",
+ "integrity": "sha512-27d4lZoomVyo51VegxI20xZPuSHusqbQag/ztrBC7wegWoQ1nLREPVSKSW8byhTlzTKyNE4ifaTA6lCp7JjpFw==",
+ "dev": true,
+ "requires": {
+ "@babel/highlight": "^7.0.0"
+ }
+ },
+ "@babel/core": {
+ "version": "7.6.4",
+ "resolved": "https://registry.npmjs.org/@babel/core/-/core-7.6.4.tgz",
+ "integrity": "sha512-Rm0HGw101GY8FTzpWSyRbki/jzq+/PkNQJ+nSulrdY6gFGOsNseCqD6KHRYe2E+EdzuBdr2pxCp6s4Uk6eJ+XQ==",
+ "dev": true,
+ "requires": {
+ "@babel/code-frame": "^7.5.5",
+ "@babel/generator": "^7.6.4",
+ "@babel/helpers": "^7.6.2",
+ "@babel/parser": "^7.6.4",
+ "@babel/template": "^7.6.0",
+ "@babel/traverse": "^7.6.3",
+ "@babel/types": "^7.6.3",
+ "convert-source-map": "^1.1.0",
+ "debug": "^4.1.0",
+ "json5": "^2.1.0",
+ "lodash": "^4.17.13",
+ "resolve": "^1.3.2",
+ "semver": "^5.4.1",
+ "source-map": "^0.5.0"
},
"dependencies": {
- "anymatch": {
- "version": "2.0.0",
- "resolved": "https://registry.npmjs.org/anymatch/-/anymatch-2.0.0.tgz",
- "integrity": "sha512-5teOsQWABXHHBFP9y3skS5P3d/WfWXpv3FUpy+LorMrNYaT9pI4oLMQX7jzQ2KklNpGpWHzdCXTDT2Y3XGlZBw==",
- "dev": true,
- "optional": true,
- "requires": {
- "micromatch": "^3.1.4",
- "normalize-path": "^2.1.1"
- },
- "dependencies": {
- "normalize-path": {
- "version": "2.1.1",
- "resolved": "https://registry.npmjs.org/normalize-path/-/normalize-path-2.1.1.tgz",
- "integrity": "sha1-GrKLVW4Zg2Oowab35vogE3/mrtk=",
- "dev": true,
- "optional": true,
- "requires": {
- "remove-trailing-separator": "^1.0.1"
- }
- }
- }
- },
- "arr-diff": {
- "version": "4.0.0",
- "resolved": "https://registry.npmjs.org/arr-diff/-/arr-diff-4.0.0.tgz",
- "integrity": "sha1-1kYQdP6/7HHn4VI1dhoyml3HxSA=",
- "dev": true,
- "optional": true
- },
- "arr-flatten": {
- "version": "1.1.0",
- "resolved": "https://registry.npmjs.org/arr-flatten/-/arr-flatten-1.1.0.tgz",
- "integrity": "sha512-L3hKV5R/p5o81R7O02IGnwpDmkp6E982XhtbuwSe3O4qOtMMMtodicASA1Cny2U+aCXcNpml+m4dPsvsJ3jatg==",
- "dev": true,
- "optional": true
- },
- "array-unique": {
- "version": "0.3.2",
- "resolved": "https://registry.npmjs.org/array-unique/-/array-unique-0.3.2.tgz",
- "integrity": "sha1-qJS3XUvE9s1nnvMkSp/Y9Gri1Cg=",
- "dev": true,
- "optional": true
- },
- "braces": {
- "version": "2.3.2",
- "resolved": "https://registry.npmjs.org/braces/-/braces-2.3.2.tgz",
- "integrity": "sha512-aNdbnj9P8PjdXU4ybaWLK2IF3jc/EoDYbC7AazW6to3TRsfXxscC9UXOB5iDiEQrkyIbWp2SLQda4+QAa7nc3w==",
- "dev": true,
- "optional": true,
- "requires": {
- "arr-flatten": "^1.1.0",
- "array-unique": "^0.3.2",
- "extend-shallow": "^2.0.1",
- "fill-range": "^4.0.0",
- "isobject": "^3.0.1",
- "repeat-element": "^1.1.2",
- "snapdragon": "^0.8.1",
- "snapdragon-node": "^2.0.1",
- "split-string": "^3.0.2",
- "to-regex": "^3.0.1"
- },
- "dependencies": {
- "extend-shallow": {
- "version": "2.0.1",
- "resolved": "https://registry.npmjs.org/extend-shallow/-/extend-shallow-2.0.1.tgz",
- "integrity": "sha1-Ua99YUrZqfYQ6huvu5idaxxWiQ8=",
- "dev": true,
- "optional": true,
- "requires": {
- "is-extendable": "^0.1.0"
- }
- }
- }
+ "@babel/parser": {
+ "version": "7.6.4",
+ "resolved": "https://registry.npmjs.org/@babel/parser/-/parser-7.6.4.tgz",
+ "integrity": "sha512-D8RHPW5qd0Vbyo3qb+YjO5nvUVRTXFLQ/FsDxJU2Nqz4uB5EnUN0ZQSEYpvTIbRuttig1XbHWU5oMeQwQSAA+A==",
+ "dev": true
},
- "chokidar": {
- "version": "2.1.8",
- "resolved": "https://registry.npmjs.org/chokidar/-/chokidar-2.1.8.tgz",
- "integrity": "sha512-ZmZUazfOzf0Nve7duiCKD23PFSCs4JPoYyccjUFF3aQkQadqBhfzhjkwBH2mNOG9cTBwhamM37EIsIkZw3nRgg==",
+ "debug": {
+ "version": "4.1.1",
+ "resolved": "https://registry.npmjs.org/debug/-/debug-4.1.1.tgz",
+ "integrity": "sha512-pYAIzeRo8J6KPEaJ0VWOh5Pzkbw/RetuzehGM7QRRX5he4fPHx2rdKMB256ehJCkX+XRQm16eZLqLNS8RSZXZw==",
"dev": true,
- "optional": true,
"requires": {
- "anymatch": "^2.0.0",
- "async-each": "^1.0.1",
- "braces": "^2.3.2",
- "fsevents": "^1.2.7",
- "glob-parent": "^3.1.0",
- "inherits": "^2.0.3",
- "is-binary-path": "^1.0.0",
- "is-glob": "^4.0.0",
- "normalize-path": "^3.0.0",
- "path-is-absolute": "^1.0.0",
- "readdirp": "^2.2.1",
- "upath": "^1.1.1"
+ "ms": "^2.1.1"
}
},
- "expand-brackets": {
- "version": "2.1.4",
- "resolved": "https://registry.npmjs.org/expand-brackets/-/expand-brackets-2.1.4.tgz",
- "integrity": "sha1-t3c14xXOMPa27/D4OwQVGiJEliI=",
+ "json5": {
+ "version": "2.1.1",
+ "resolved": "https://registry.npmjs.org/json5/-/json5-2.1.1.tgz",
+ "integrity": "sha512-l+3HXD0GEI3huGq1njuqtzYK8OYJyXMkOLtQ53pjWh89tvWS2h6l+1zMkYWqlb57+SiQodKZyvMEFb2X+KrFhQ==",
"dev": true,
- "optional": true,
"requires": {
- "debug": "^2.3.3",
- "define-property": "^0.2.5",
- "extend-shallow": "^2.0.1",
- "posix-character-classes": "^0.1.0",
- "regex-not": "^1.0.0",
- "snapdragon": "^0.8.1",
- "to-regex": "^3.0.1"
- },
- "dependencies": {
- "define-property": {
- "version": "0.2.5",
- "resolved": "https://registry.npmjs.org/define-property/-/define-property-0.2.5.tgz",
- "integrity": "sha1-w1se+RjsPJkPmlvFe+BKrOxcgRY=",
- "dev": true,
- "optional": true,
- "requires": {
- "is-descriptor": "^0.1.0"
- }
- },
- "extend-shallow": {
- "version": "2.0.1",
- "resolved": "https://registry.npmjs.org/extend-shallow/-/extend-shallow-2.0.1.tgz",
- "integrity": "sha1-Ua99YUrZqfYQ6huvu5idaxxWiQ8=",
- "dev": true,
- "optional": true,
- "requires": {
- "is-extendable": "^0.1.0"
- }
- },
- "is-accessor-descriptor": {
- "version": "0.1.6",
- "resolved": "https://registry.npmjs.org/is-accessor-descriptor/-/is-accessor-descriptor-0.1.6.tgz",
- "integrity": "sha1-qeEss66Nh2cn7u84Q/igiXtcmNY=",
- "dev": true,
- "optional": true,
- "requires": {
- "kind-of": "^3.0.2"
- },
- "dependencies": {
- "kind-of": {
- "version": "3.2.2",
- "resolved": "https://registry.npmjs.org/kind-of/-/kind-of-3.2.2.tgz",
- "integrity": "sha1-MeohpzS6ubuw8yRm2JOupR5KPGQ=",
- "dev": true,
- "optional": true,
- "requires": {
- "is-buffer": "^1.1.5"
- }
- }
- }
- },
- "is-data-descriptor": {
- "version": "0.1.4",
- "resolved": "https://registry.npmjs.org/is-data-descriptor/-/is-data-descriptor-0.1.4.tgz",
- "integrity": "sha1-C17mSDiOLIYCgueT8YVv7D8wG1Y=",
- "dev": true,
- "optional": true,
- "requires": {
- "kind-of": "^3.0.2"
- },
- "dependencies": {
- "kind-of": {
- "version": "3.2.2",
- "resolved": "https://registry.npmjs.org/kind-of/-/kind-of-3.2.2.tgz",
- "integrity": "sha1-MeohpzS6ubuw8yRm2JOupR5KPGQ=",
- "dev": true,
- "optional": true,
- "requires": {
- "is-buffer": "^1.1.5"
- }
- }
- }
- },
- "is-descriptor": {
- "version": "0.1.6",
- "resolved": "https://registry.npmjs.org/is-descriptor/-/is-descriptor-0.1.6.tgz",
- "integrity": "sha512-avDYr0SB3DwO9zsMov0gKCESFYqCnE4hq/4z3TdUlukEy5t9C0YRq7HLrsN52NAcqXKaepeCD0n+B0arnVG3Hg==",
- "dev": true,
- "optional": true,
- "requires": {
- "is-accessor-descriptor": "^0.1.6",
- "is-data-descriptor": "^0.1.4",
- "kind-of": "^5.0.0"
- }
- },
- "kind-of": {
- "version": "5.1.0",
- "resolved": "https://registry.npmjs.org/kind-of/-/kind-of-5.1.0.tgz",
- "integrity": "sha512-NGEErnH6F2vUuXDh+OlbcKW7/wOcfdRHaZ7VWtqCztfHri/++YKmP51OdWeGPuqCOba6kk2OTe5d02VmTB80Pw==",
- "dev": true,
- "optional": true
- }
+ "minimist": "^1.2.0"
}
},
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->>>>>>> d73d615c1... update
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->>>>>>> d73d615c1... update
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->>>>>>> d73d615c1... update
}
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->>>>>>> d73d615c1... update
"dev": true
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-<<<<<<< HEAD
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->>>>>>> d73d615c1... update
}
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-<<<<<<< HEAD
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->>>>>>> d73d615c1... update
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-<<<<<<< HEAD
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->>>>>>> d73d615c1... update
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@@ -1186,46 +648,6 @@
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-<<<<<<< HEAD
-=======
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->>>>>>> d73d615c1... update
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@@ -1314,20 +736,6 @@
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-<<<<<<< HEAD
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- }
->>>>>>> d73d615c1... update
}
},
"@babel/plugin-transform-reserved-words": {
@@ -1395,46 +803,6 @@
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"regexpu-core": "^4.6.0"
-<<<<<<< HEAD
-=======
- },
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- "dev": true
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- "resolved": "https://registry.npmjs.org/regjsparser/-/regjsparser-0.6.0.tgz",
- "integrity": "sha512-RQ7YyokLiQBomUJuUG8iGVvkgOLxwyZM8k6d3q5SAXpg4r5TZJZigKFvC6PpD+qQ98bCDC5YelPeA3EucDoNeQ==",
- "dev": true,
- "requires": {
- "jsesc": "~0.5.0"
- }
- }
->>>>>>> d73d615c1... update
}
},
"@babel/preset-env": {
@@ -1493,34 +861,6 @@
"invariant": "^2.2.2",
"js-levenshtein": "^1.1.3",
"semver": "^5.5.0"
-<<<<<<< HEAD
-=======
- },
- "dependencies": {
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- "resolved": "https://registry.npmjs.org/browserslist/-/browserslist-4.7.2.tgz",
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- "dev": true
- }
->>>>>>> d73d615c1... update
}
},
"@babel/preset-react": {
@@ -1564,15 +904,12 @@
"lodash": "^4.17.13"
},
"dependencies": {
-<<<<<<< HEAD
"@babel/parser": {
"version": "7.6.4",
"resolved": "https://registry.npmjs.org/@babel/parser/-/parser-7.6.4.tgz",
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"dev": true
},
-=======
->>>>>>> d73d615c1... update
"debug": {
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"resolved": "https://registry.npmjs.org/debug/-/debug-4.1.1.tgz",
@@ -1582,15 +919,6 @@
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},
-<<<<<<< HEAD
-=======
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- "resolved": "https://registry.npmjs.org/globals/-/globals-11.12.0.tgz",
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- "dev": true
- },
->>>>>>> d73d615c1... update
"ms": {
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"resolved": "https://registry.npmjs.org/ms/-/ms-2.1.2.tgz",
@@ -1608,17 +936,6 @@
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"lodash": "^4.17.13",
"to-fast-properties": "^2.0.0"
-<<<<<<< HEAD
-=======
- },
- "dependencies": {
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- "dev": true
- }
->>>>>>> d73d615c1... update
}
},
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@@ -1820,23 +1137,10 @@
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"dev": true
},
-<<<<<<< HEAD
"ajv": {
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"resolved": "https://registry.npmjs.org/ajv/-/ajv-6.5.5.tgz",
"integrity": "sha512-7q7gtRQDJSyuEHjuVgHoUa2VuemFiCMrfQc9Tc08XTAc4Zj/5U1buQJ0HU6i7fKjXU09SVgSmxa4sLvuvS8Iyg==",
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- "integrity": "sha512-tMUqwBWfLFbJbizRmEcWSLw6HnFzfdJs2sOJEOwwtVPMoH/0Ay+E703oZz78VSXZiiDcZrQ5XKjPIUQixhmgVw==",
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->>>>>>> d73d615c1... update
"dev": true,
"requires": {
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@@ -1852,27 +1156,9 @@
"dev": true
},
"ajv-keywords": {
-<<<<<<< HEAD
"version": "3.2.0",
"resolved": "https://registry.npmjs.org/ajv-keywords/-/ajv-keywords-3.2.0.tgz",
"integrity": "sha1-6GuBnGAs+IIa1jdBNpjx3sAhhHo=",
-=======
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- "dev": true
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- "resolved": "https://registry.npmjs.org/ansi-escapes/-/ansi-escapes-3.2.0.tgz",
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- "dev": true
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- "integrity": "sha1-7QMXwyIGT3lGbAKWa922Bas32Zg=",
->>>>>>> d73d615c1... update
"dev": true
},
"ansi-styles": {
@@ -1884,7 +1170,6 @@
"color-convert": "^1.9.0"
}
},
-<<<<<<< HEAD
"anymatch": {
"version": "2.0.0",
"resolved": "https://registry.npmjs.org/anymatch/-/anymatch-2.0.0.tgz",
@@ -1906,8 +1191,6 @@
}
}
},
-=======
->>>>>>> d73d615c1... update
"aproba": {
"version": "1.2.0",
"resolved": "https://registry.npmjs.org/aproba/-/aproba-1.2.0.tgz",
@@ -1923,7 +1206,6 @@
"sprintf-js": "~1.0.2"
}
},
-<<<<<<< HEAD
"arr-diff": {
"version": "4.0.0",
"resolved": "https://registry.npmjs.org/arr-diff/-/arr-diff-4.0.0.tgz",
@@ -1936,8 +1218,6 @@
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"dev": true
},
-=======
->>>>>>> d73d615c1... update
"arr-union": {
"version": "3.1.0",
"resolved": "https://registry.npmjs.org/arr-union/-/arr-union-3.1.0.tgz",
@@ -1954,15 +1234,12 @@
"es-abstract": "^1.7.0"
}
},
-<<<<<<< HEAD
"array-unique": {
"version": "0.3.2",
"resolved": "https://registry.npmjs.org/array-unique/-/array-unique-0.3.2.tgz",
"integrity": "sha1-qJS3XUvE9s1nnvMkSp/Y9Gri1Cg=",
"dev": true
},
-=======
->>>>>>> d73d615c1... update
"asap": {
"version": "2.0.6",
"resolved": "https://registry.npmjs.org/asap/-/asap-2.0.6.tgz",
@@ -2042,7 +1319,6 @@
"@babel/types": "^7.0.0",
"eslint-visitor-keys": "^1.0.0",
"resolve": "^1.12.0"
-<<<<<<< HEAD
},
"dependencies": {
"@babel/code-frame": {
@@ -2214,8 +1490,6 @@
"integrity": "sha1-3F5pjL0HkmW8c+A3doGk5Og/YW4=",
"dev": true
}
-=======
->>>>>>> d73d615c1... update
}
},
"babel-loader": {
@@ -2228,7 +1502,6 @@
"loader-utils": "^1.0.2",
"mkdirp": "^0.5.1",
"pify": "^4.0.1"
-<<<<<<< HEAD
},
"dependencies": {
"find-cache-dir": {
@@ -2310,8 +1583,6 @@
"find-up": "^3.0.0"
}
}
-=======
->>>>>>> d73d615c1... update
}
},
"babel-plugin-dynamic-import-node": {
@@ -2387,15 +1658,12 @@
"resolved": "https://registry.npmjs.org/isobject/-/isobject-3.0.1.tgz",
"integrity": "sha1-TkMekrEalzFjaqH5yNHMvP2reN8=",
"dev": true
-<<<<<<< HEAD
},
"kind-of": {
"version": "6.0.2",
"resolved": "https://registry.npmjs.org/kind-of/-/kind-of-6.0.2.tgz",
"integrity": "sha512-s5kLOcnH0XqDO+FvuaLX8DDjZ18CGFk7VygH40QoKPUQhW4e2rvM0rwUq0t8IQDOwYSeLK01U90OjzBTme2QqA==",
"dev": true
-=======
->>>>>>> d73d615c1... update
}
}
},
@@ -2406,15 +1674,9 @@
"dev": true
},
"big.js": {
-<<<<<<< HEAD
"version": "3.2.0",
"resolved": "https://registry.npmjs.org/big.js/-/big.js-3.2.0.tgz",
"integrity": "sha512-+hN/Zh2D08Mx65pZ/4g5bsmNiZUuChDiQfTUQ7qJr4/kuopCr88xZsAXv6mBoZEsUI4OuGHlX59qE94K2mMW8Q==",
-=======
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->>>>>>> d73d615c1... update
"dev": true
},
"binary-extensions": {
@@ -2423,15 +1685,6 @@
"integrity": "sha512-Un7MIEDdUC5gNpcGDV97op1Ywk748MpHcFTHoYs6qnj1Z3j7I53VG3nwZhKzoBZmbdRNnb6WRdFlwl7tSDuZGw==",
"dev": true
},
-<<<<<<< HEAD
-=======
- "bluebird": {
- "version": "3.7.1",
- "resolved": "https://registry.npmjs.org/bluebird/-/bluebird-3.7.1.tgz",
- "integrity": "sha512-DdmyoGCleJnkbp3nkbxTLJ18rjDsE4yCggEwKNXkeV123sPNfOCYeDoeuOY+F2FrSjO1YXcTU+dsy96KMy+gcg==",
- "dev": true
- },
->>>>>>> d73d615c1... update
"bn.js": {
"version": "4.11.8",
"resolved": "https://registry.npmjs.org/bn.js/-/bn.js-4.11.8.tgz",
@@ -2439,22 +1692,15 @@
"dev": true
},
"brace-expansion": {
-<<<<<<< HEAD
"version": "1.1.8",
"resolved": "https://registry.npmjs.org/brace-expansion/-/brace-expansion-1.1.8.tgz",
"integrity": "sha1-wHshHHyVLsH479Uad+8NHTmQopI=",
-=======
- "version": "1.1.11",
- "resolved": "https://registry.npmjs.org/brace-expansion/-/brace-expansion-1.1.11.tgz",
- "integrity": "sha512-iCuPHDFgrHX7H2vEI/5xpz07zSHB00TpugqhmYtVmMO6518mCuRMoOYFldEBl0g187ufozdaHgWKcYFb61qGiA==",
->>>>>>> d73d615c1... update
"dev": true,
"requires": {
"balanced-match": "^1.0.0",
"concat-map": "0.0.1"
}
},
-<<<<<<< HEAD
"braces": {
"version": "2.3.2",
"resolved": "https://registry.npmjs.org/braces/-/braces-2.3.2.tgz",
@@ -2484,8 +1730,6 @@
}
}
},
-=======
->>>>>>> d73d615c1... update
"brorand": {
"version": "1.1.0",
"resolved": "https://registry.npmjs.org/brorand/-/brorand-1.1.0.tgz",
@@ -2494,11 +1738,7 @@
},
"browserify-aes": {
"version": "1.2.0",
-<<<<<<< HEAD
"resolved": "http://registry.npmjs.org/browserify-aes/-/browserify-aes-1.2.0.tgz",
-=======
- "resolved": "https://registry.npmjs.org/browserify-aes/-/browserify-aes-1.2.0.tgz",
->>>>>>> d73d615c1... update
"integrity": "sha512-+7CHXqGuspUn/Sl5aO7Ea0xWGAtETPXNSAjHo48JfLdPWcMng33Xe4znFvQweqc/uzk5zSOI3H52CYnjCfb5hA==",
"dev": true,
"requires": {
@@ -2531,7 +1771,6 @@
"des.js": "^1.0.0",
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"safe-buffer": "^5.1.2"
-<<<<<<< HEAD
},
"dependencies": {
"safe-buffer": {
@@ -2540,17 +1779,11 @@
"integrity": "sha512-fZEwUGbVl7kouZs1jCdMLdt95hdIv0ZeHg6L7qPeciMZhZ+/gdesW4wgTARkrFWEpspjEATAzUGPG8N2jJiwbg==",
"dev": true
}
-=======
->>>>>>> d73d615c1... update
}
},
"browserify-rsa": {
"version": "4.0.1",
-<<<<<<< HEAD
"resolved": "http://registry.npmjs.org/browserify-rsa/-/browserify-rsa-4.0.1.tgz",
-=======
- "resolved": "https://registry.npmjs.org/browserify-rsa/-/browserify-rsa-4.0.1.tgz",
->>>>>>> d73d615c1... update
"integrity": "sha1-IeCr+vbyApzy+vsTNWenAdQTVSQ=",
"dev": true,
"requires": {
@@ -2582,7 +1815,6 @@
"pako": "~1.0.5"
}
},
-<<<<<<< HEAD
"browserslist": {
"version": "4.7.2",
"resolved": "https://registry.npmjs.org/browserslist/-/browserslist-4.7.2.tgz",
@@ -2597,11 +1829,6 @@
"buffer": {
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"resolved": "http://registry.npmjs.org/buffer/-/buffer-4.9.1.tgz",
-=======
- "buffer": {
- "version": "4.9.1",
- "resolved": "https://registry.npmjs.org/buffer/-/buffer-4.9.1.tgz",
->>>>>>> d73d615c1... update
"integrity": "sha1-bRu2AbB6TvztlwlBMgkwJ8lbwpg=",
"dev": true,
"requires": {
@@ -2628,32 +1855,6 @@
"integrity": "sha1-hZgoeOIbmOHGZCXgPQF0eI9Wnug=",
"dev": true
},
-<<<<<<< HEAD
-=======
- "cacache": {
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- "resolved": "https://registry.npmjs.org/cacache/-/cacache-12.0.3.tgz",
- "integrity": "sha512-kqdmfXEGFepesTuROHMs3MpFLWrPkSSpRqOw80RCflZXy/khxaArvFrQ7uJxSUduzAufc6G0g1VUCOZXxWavPw==",
- "dev": true,
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- "ssri": "^6.0.1",
- "unique-filename": "^1.1.1",
- "y18n": "^4.0.0"
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- },
->>>>>>> d73d615c1... update
"cache-base": {
"version": "1.0.1",
"resolved": "https://registry.npmjs.org/cache-base/-/cache-base-1.0.1.tgz",
@@ -2679,7 +1880,6 @@
}
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},
-<<<<<<< HEAD
"camelcase": {
"version": "5.0.0",
"resolved": "https://registry.npmjs.org/camelcase/-/camelcase-5.0.0.tgz",
@@ -2690,18 +1890,6 @@
"version": "1.0.30001006",
"resolved": "https://registry.npmjs.org/caniuse-lite/-/caniuse-lite-1.0.30001006.tgz",
"integrity": "sha512-MXnUVX27aGs/QINz+QG1sWSLDr3P1A3Hq5EUWoIt0T7K24DuvMxZEnh3Y5aHlJW6Bz2aApJdSewdYLd8zQnUuw==",
-=======
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- "resolved": "https://registry.npmjs.org/callsites/-/callsites-3.1.0.tgz",
- "integrity": "sha512-P8BjAsXvZS+VIDUI11hHCQEv74YT67YUi5JJFNWIqL235sBmjX4+qx9Muvls5ivyNENctx46xQLQ3aTuE7ssaQ==",
- "dev": true
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- "integrity": "sha512-L28STB170nwWS63UjtlEOE3dldQApaJXZkOI1uMFfzf3rRuPegHaHesyee+YxQ+W6SvRDQV6UrdOdRiR153wJg==",
->>>>>>> d73d615c1... update
"dev": true
},
"chalk": {
@@ -2715,7 +1903,6 @@
"supports-color": "^5.3.0"
}
},
-<<<<<<< HEAD
"chokidar": {
"version": "2.1.8",
"resolved": "https://registry.npmjs.org/chokidar/-/chokidar-2.1.8.tgz",
@@ -2740,18 +1927,6 @@
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"integrity": "sha512-j38EvO5+LHX84jlo6h4UzmOwi0UgW61WRyPtJz4qaadK5eY3BTS5TY/S1Stc3Uk2lIM6TPevAlULiEJwie860g==",
-=======
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- "resolved": "https://registry.npmjs.org/chardet/-/chardet-0.7.0.tgz",
- "integrity": "sha512-mT8iDcrh03qDGRRmoA2hmBJnxpllMR+0/0qlzjqZES6NdiWDcZkCNAk4rPFZ9Q85r27unkiNNg8ZOiwZXBHwcA==",
- "dev": true
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- "resolved": "https://registry.npmjs.org/chownr/-/chownr-1.1.3.tgz",
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->>>>>>> d73d615c1... update
"dev": true
},
"chrome-trace-event": {
@@ -2811,60 +1986,12 @@
"restore-cursor": "^2.0.0"
}
},
-<<<<<<< HEAD
- "cli-width": {
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- "resolved": "https://registry.npmjs.org/cli-width/-/cli-width-2.2.0.tgz",
- "integrity": "sha1-/xnt6Kml5XkyQUewwR8PvLq+1jk=",
- "dev": true
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-=======
"cli-width": {
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"resolved": "https://registry.npmjs.org/cli-width/-/cli-width-2.2.0.tgz",
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->>>>>>> d73d615c1... update
"collection-visit": {
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@@ -2903,15 +2030,9 @@
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"version": "1.2.1",
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-=======
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->>>>>>> d73d615c1... update
"dev": true
},
"concat-map": {
@@ -2945,7 +2066,6 @@
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},
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-<<<<<<< HEAD
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@@ -2961,12 +2081,6 @@
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- "dev": true
->>>>>>> d73d615c1... update
},
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@@ -2998,32 +2112,6 @@
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-<<<<<<< HEAD
-=======
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- "dev": true
- },
->>>>>>> d73d615c1... update
"semver": {
"version": "6.3.0",
"resolved": "https://registry.npmjs.org/semver/-/semver-6.3.0.tgz",
@@ -3050,11 +2138,7 @@
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-<<<<<<< HEAD
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-=======
- "resolved": "https://registry.npmjs.org/create-hash/-/create-hash-1.2.0.tgz",
->>>>>>> d73d615c1... update
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@@ -3067,11 +2151,7 @@
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-<<<<<<< HEAD
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-=======
- "resolved": "https://registry.npmjs.org/create-hmac/-/create-hmac-1.1.7.tgz",
->>>>>>> d73d615c1... update
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@@ -3116,15 +2196,9 @@
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-<<<<<<< HEAD
"version": "0.2.2",
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-=======
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->>>>>>> d73d615c1... update
"dev": true
},
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@@ -3207,15 +2281,12 @@
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"integrity": "sha1-TkMekrEalzFjaqH5yNHMvP2reN8=",
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-<<<<<<< HEAD
},
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"dev": true
-=======
->>>>>>> d73d615c1... update
}
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@@ -3237,11 +2308,7 @@
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-<<<<<<< HEAD
"resolved": "http://registry.npmjs.org/diffie-hellman/-/diffie-hellman-5.0.3.tgz",
-=======
- "resolved": "https://registry.npmjs.org/diffie-hellman/-/diffie-hellman-5.0.3.tgz",
->>>>>>> d73d615c1... update
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@@ -3251,15 +2318,9 @@
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-<<<<<<< HEAD
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-=======
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->>>>>>> d73d615c1... update
"dev": true,
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@@ -3272,15 +2333,9 @@
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-<<<<<<< HEAD
"version": "3.6.1",
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-=======
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->>>>>>> d73d615c1... update
"dev": true,
"requires": {
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@@ -3289,15 +2344,12 @@
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}
},
-<<<<<<< HEAD
"electron-to-chromium": {
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"resolved": "https://registry.npmjs.org/electron-to-chromium/-/electron-to-chromium-1.3.296.tgz",
"integrity": "sha512-s5hv+TSJSVRsxH190De66YHb50pBGTweT9XGWYu/LMR20KX6TsjFzObo36CjVAzM+PUeeKSBRtm/mISlCzeojQ==",
"dev": true
},
-=======
->>>>>>> d73d615c1... update
"elliptic": {
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"resolved": "https://registry.npmjs.org/elliptic/-/elliptic-6.5.1.tgz",
@@ -3334,22 +2386,15 @@
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-<<<<<<< HEAD
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->>>>>>> d73d615c1... update
"dev": true,
"requires": {
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}
},
"enhanced-resolve": {
-<<<<<<< HEAD
"version": "4.1.0",
"resolved": "https://registry.npmjs.org/enhanced-resolve/-/enhanced-resolve-4.1.0.tgz",
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@@ -3358,28 +2403,6 @@
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- "dev": true,
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->>>>>>> d73d615c1... update
}
},
"errno": {
@@ -3470,7 +2493,6 @@
"text-table": "^0.2.0"
},
"dependencies": {
-<<<<<<< HEAD
"@babel/code-frame": {
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"resolved": "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.5.5.tgz",
@@ -3541,8 +2563,6 @@
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"dev": true
},
-=======
->>>>>>> d73d615c1... update
"debug": {
"version": "4.1.1",
"resolved": "https://registry.npmjs.org/debug/-/debug-4.1.1.tgz",
@@ -3552,7 +2572,6 @@
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},
-<<<<<<< HEAD
"doctrine": {
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"resolved": "https://registry.npmjs.org/doctrine/-/doctrine-3.0.0.tgz",
@@ -3622,15 +2641,12 @@
"write": "1.0.3"
}
},
-=======
->>>>>>> d73d615c1... update
"globals": {
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"resolved": "https://registry.npmjs.org/globals/-/globals-11.12.0.tgz",
"integrity": "sha512-WOBp/EEGUiIsJSp7wcv/y6MO+lV9UoncWqxuFfm8eBwzWNgyfBd6Gz+IeKQ9jCmyhoH99g15M3T+QaVHFjizVA==",
"dev": true
},
-<<<<<<< HEAD
"inquirer": {
"version": "6.5.2",
"resolved": "https://registry.npmjs.org/inquirer/-/inquirer-6.5.2.tgz",
@@ -3669,14 +2685,11 @@
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"dev": true
},
-=======
->>>>>>> d73d615c1... update
"ms": {
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"resolved": "https://registry.npmjs.org/ms/-/ms-2.1.2.tgz",
"integrity": "sha512-sGkPx+VjMtmA6MX27oA4FBFELFCZZ4S4XqeGOXCv68tT+jb3vk/RyaKWP0PTKyWtmLSM0b+adUTEvbs1PEaH2w==",
"dev": true
-<<<<<<< HEAD
},
"rimraf": {
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@@ -3791,8 +2804,6 @@
"requires": {
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}
-=======
->>>>>>> d73d615c1... update
}
}
},
@@ -3830,20 +2841,6 @@
"object.values": "^1.1.0",
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-<<<<<<< HEAD
-=======
- },
- "dependencies": {
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- "dev": true,
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->>>>>>> d73d615c1... update
}
},
"eslint-scope": {
@@ -3857,7 +2854,6 @@
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-<<<<<<< HEAD
"version": "1.4.2",
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@@ -3872,33 +2868,6 @@
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- "dev": true,
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->>>>>>> d73d615c1... update
"esprima": {
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"resolved": "https://registry.npmjs.org/esprima/-/esprima-4.0.1.tgz",
@@ -3924,7 +2893,6 @@
}
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-<<<<<<< HEAD
"version": "4.2.0",
"resolved": "https://registry.npmjs.org/estraverse/-/estraverse-4.2.0.tgz",
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@@ -3993,48 +2961,6 @@
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-=======
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->>>>>>> d73d615c1... update
}
},
"expand-tilde": {
@@ -4067,7 +2993,6 @@
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"extglob": {
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@@ -4137,17 +3062,6 @@
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-=======
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- "resolved": "https://registry.npmjs.org/external-editor/-/external-editor-3.1.0.tgz",
- "integrity": "sha512-hMQ4CX1p1izmuLYyZqLMO/qGNw10wSv9QDCPfzXfyFrOaCSSoRfqE1Kf1s5an66J5JZC62NewG+mK49jOCtQew==",
- "dev": true,
- "requires": {
- "chardet": "^0.7.0",
- "iconv-lite": "^0.4.24",
- "tmp": "^0.0.33"
->>>>>>> d73d615c1... update
}
},
"fast-deep-equal": {
@@ -4204,7 +3118,6 @@
"escape-string-regexp": "^1.0.5"
}
},
-<<<<<<< HEAD
"fill-range": {
"version": "4.0.0",
"resolved": "https://registry.npmjs.org/fill-range/-/fill-range-4.0.0.tgz",
@@ -4226,35 +3139,6 @@
"is-extendable": "^0.1.0"
}
}
-=======
- "file-entry-cache": {
- "version": "5.0.1",
- "resolved": "https://registry.npmjs.org/file-entry-cache/-/file-entry-cache-5.0.1.tgz",
- "integrity": "sha512-bCg29ictuBaKUwwArK4ouCaqDgLZcysCFLmM/Yn/FDoqndh/9vNuQfXRDvTuXKLxfD/JtZQGKFT8MGcJBK644g==",
- "dev": true,
- "requires": {
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- }
- },
- "find-cache-dir": {
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- "resolved": "https://registry.npmjs.org/find-cache-dir/-/find-cache-dir-2.1.0.tgz",
- "integrity": "sha512-Tq6PixE0w/VMFfCgbONnkiQIVol/JJL7nRMi20fqzA4NRs9AfeqMGeRdPi3wIhYkxjeBaWh2rxwapn5Tu3IqOQ==",
- "dev": true,
- "requires": {
- "commondir": "^1.0.1",
- "make-dir": "^2.0.0",
- "pkg-dir": "^3.0.0"
- }
- },
- "find-up": {
- "version": "3.0.0",
- "resolved": "https://registry.npmjs.org/find-up/-/find-up-3.0.0.tgz",
- "integrity": "sha512-1yD6RmLI1XBfxugvORwlck6f75tYL+iR0jqwsOrOxMZyGYqUuDhJ0l4AXdO1iX/FTs9cBAMEk1gWSEx1kSbylg==",
- "dev": true,
- "requires": {
- "locate-path": "^3.0.0"
->>>>>>> d73d615c1... update
}
},
"findup-sync": {
@@ -4537,15 +3421,12 @@
"integrity": "sha1-TkMekrEalzFjaqH5yNHMvP2reN8=",
"dev": true
},
-<<<<<<< HEAD
"kind-of": {
"version": "6.0.2",
"resolved": "https://registry.npmjs.org/kind-of/-/kind-of-6.0.2.tgz",
"integrity": "sha512-s5kLOcnH0XqDO+FvuaLX8DDjZ18CGFk7VygH40QoKPUQhW4e2rvM0rwUq0t8IQDOwYSeLK01U90OjzBTme2QqA==",
"dev": true
},
-=======
->>>>>>> d73d615c1... update
"micromatch": {
"version": "3.1.10",
"resolved": "https://registry.npmjs.org/micromatch/-/micromatch-3.1.10.tgz",
@@ -4569,20 +3450,6 @@
}
}
},
-<<<<<<< HEAD
-=======
- "flat-cache": {
- "version": "2.0.1",
- "resolved": "https://registry.npmjs.org/flat-cache/-/flat-cache-2.0.1.tgz",
- "integrity": "sha512-LoQe6yDuUMDzQAEH8sgmh4Md6oZnc/7PjtwjNFSzveXqSHt6ka9fPBuso7IGf9Rz4uqnSnWiFH2B/zj24a5ReA==",
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- "requires": {
- "flatted": "^2.0.0",
- "rimraf": "2.6.3",
- "write": "1.0.3"
- }
- },
->>>>>>> d73d615c1... update
"flatted": {
"version": "2.0.1",
"resolved": "https://registry.npmjs.org/flatted/-/flatted-2.0.1.tgz",
@@ -4590,7 +3457,6 @@
"dev": true
},
"flush-write-stream": {
-<<<<<<< HEAD
"version": "1.0.3",
"resolved": "https://registry.npmjs.org/flush-write-stream/-/flush-write-stream-1.0.3.tgz",
"integrity": "sha512-calZMC10u0FMUqoiunI2AiGIIUtUIvifNwkHhNupZH4cbNnW1Itkoh/Nf5HFYmDrwWPjrUxpkZT0KhuCq0jmGw==",
@@ -4598,15 +3464,6 @@
"requires": {
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"readable-stream": "^2.0.4"
-=======
- "version": "1.1.1",
- "resolved": "https://registry.npmjs.org/flush-write-stream/-/flush-write-stream-1.1.1.tgz",
- "integrity": "sha512-3Z4XhFZ3992uIq0XOqb9AreonueSYphE6oYbpt5+3u06JWklbsPkNv3ZKkP9Bz/r+1MWCaMoSQ28P85+1Yc77w==",
- "dev": true,
- "requires": {
- "inherits": "^2.0.3",
- "readable-stream": "^2.3.6"
->>>>>>> d73d615c1... update
}
},
"for-in": {
@@ -4634,15 +3491,12 @@
"readable-stream": "^2.0.0"
}
},
-<<<<<<< HEAD
"fs-readdir-recursive": {
"version": "1.1.0",
"resolved": "https://registry.npmjs.org/fs-readdir-recursive/-/fs-readdir-recursive-1.1.0.tgz",
"integrity": "sha512-GNanXlVr2pf02+sPN40XN8HG+ePaNcvM0q5mZBd668Obwb0yD5GiUbZOFgwn8kGMY6I3mdyDJzieUy3PTYyTRA==",
"dev": true
},
-=======
->>>>>>> d73d615c1... update
"fs-write-stream-atomic": {
"version": "1.0.10",
"resolved": "https://registry.npmjs.org/fs-write-stream-atomic/-/fs-write-stream-atomic-1.0.10.tgz",
@@ -4681,12 +3535,7 @@
"ansi-regex": {
"version": "2.1.1",
"bundled": true,
-<<<<<<< HEAD
"dev": true
-=======
- "dev": true,
- "optional": true
->>>>>>> d73d615c1... update
},
"aproba": {
"version": "1.2.0",
@@ -4707,21 +3556,12 @@
"balanced-match": {
"version": "1.0.0",
"bundled": true,
-<<<<<<< HEAD
"dev": true
-=======
- "dev": true,
- "optional": true
->>>>>>> d73d615c1... update
},
"brace-expansion": {
"version": "1.1.11",
"bundled": true,
"dev": true,
-<<<<<<< HEAD
-=======
- "optional": true,
->>>>>>> d73d615c1... update
"requires": {
"balanced-match": "^1.0.0",
"concat-map": "0.0.1"
@@ -4736,32 +3576,17 @@
"code-point-at": {
"version": "1.1.0",
"bundled": true,
-<<<<<<< HEAD
"dev": true
-=======
- "dev": true,
- "optional": true
->>>>>>> d73d615c1... update
},
"concat-map": {
"version": "0.0.1",
"bundled": true,
-<<<<<<< HEAD
"dev": true
-=======
- "dev": true,
- "optional": true
->>>>>>> d73d615c1... update
},
"console-control-strings": {
"version": "1.1.0",
"bundled": true,
-<<<<<<< HEAD
"dev": true
-=======
- "dev": true,
- "optional": true
->>>>>>> d73d615c1... update
},
"core-util-is": {
"version": "1.0.2",
@@ -4878,12 +3703,7 @@
"inherits": {
"version": "2.0.3",
"bundled": true,
-<<<<<<< HEAD
"dev": true
-=======
- "dev": true,
- "optional": true
->>>>>>> d73d615c1... update
},
"ini": {
"version": "1.3.5",
@@ -4895,10 +3715,6 @@
"version": "1.0.0",
"bundled": true,
"dev": true,
-<<<<<<< HEAD
-=======
- "optional": true,
->>>>>>> d73d615c1... update
"requires": {
"number-is-nan": "^1.0.0"
}
@@ -4913,10 +3729,6 @@
"version": "3.0.4",
"bundled": true,
"dev": true,
-<<<<<<< HEAD
-=======
- "optional": true,
->>>>>>> d73d615c1... update
"requires": {
"brace-expansion": "^1.1.7"
}
@@ -4924,21 +3736,12 @@
"minimist": {
"version": "0.0.8",
"bundled": true,
-<<<<<<< HEAD
"dev": true
-=======
- "dev": true,
- "optional": true
->>>>>>> d73d615c1... update
},
"minipass": {
"version": "2.3.5",
"bundled": true,
"dev": true,
-<<<<<<< HEAD
-=======
- "optional": true,
->>>>>>> d73d615c1... update
"requires": {
"safe-buffer": "^5.1.2",
"yallist": "^3.0.0"
@@ -4957,10 +3760,6 @@
"version": "0.5.1",
"bundled": true,
"dev": true,
-<<<<<<< HEAD
-=======
- "optional": true,
->>>>>>> d73d615c1... update
"requires": {
"minimist": "0.0.8"
}
@@ -5041,12 +3840,7 @@
"number-is-nan": {
"version": "1.0.1",
"bundled": true,
-<<<<<<< HEAD
"dev": true
-=======
- "dev": true,
- "optional": true
->>>>>>> d73d615c1... update
},
"object-assign": {
"version": "4.1.1",
@@ -5058,10 +3852,6 @@
"version": "1.4.0",
"bundled": true,
"dev": true,
-<<<<<<< HEAD
-=======
- "optional": true,
->>>>>>> d73d615c1... update
"requires": {
"wrappy": "1"
}
@@ -5088,1504 +3878,43 @@
"os-tmpdir": "^1.0.0"
}
},
- "path-is-absolute": {
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- "rc": {
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- "minimist": "^1.2.0",
- "strip-json-comments": "~2.0.1"
- },
- "dependencies": {
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- "bundled": true,
- "dev": true,
- "optional": true
- }
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- "readable-stream": {
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- "bundled": true,
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- }
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- "safe-buffer": {
- "version": "5.1.2",
- "bundled": true,
-<<<<<<< HEAD
- "dev": true
-=======
- "dev": true,
- "optional": true
->>>>>>> d73d615c1... update
- },
- "safer-buffer": {
- "version": "2.1.2",
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- "string-width": {
- "version": "1.0.2",
- "bundled": true,
- "dev": true,
-<<<<<<< HEAD
-=======
- "optional": true,
->>>>>>> d73d615c1... update
- "requires": {
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- "strip-ansi": {
- "version": "3.0.1",
- "bundled": true,
- "dev": true,
-<<<<<<< HEAD
-=======
- "optional": true,
->>>>>>> d73d615c1... update
- "requires": {
- "ansi-regex": "^2.0.0"
- }
- },
- "strip-json-comments": {
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- "version": "1.0.2",
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-<<<<<<< HEAD
- "dev": true
-=======
- "dev": true,
- "optional": true
->>>>>>> d73d615c1... update
- },
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- "version": "3.0.3",
- "bundled": true,
-<<<<<<< HEAD
- "dev": true
-=======
- "dev": true,
- "optional": true
->>>>>>> d73d615c1... update
- }
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-<<<<<<< HEAD
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- "dev": true,
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->>>>>>> d73d615c1... update
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-<<<<<<< HEAD
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->>>>>>> d73d615c1... update
- "dev": true,
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->>>>>>> d73d615c1... update
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->>>>>>> d73d615c1... update
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->>>>>>> d73d615c1... update
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->>>>>>> d73d615c1... update
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->>>>>>> d73d615c1... update
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->>>>>>> d73d615c1... update
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->>>>>>> d73d615c1... update
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->>>>>>> d73d615c1... update
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->>>>>>> d73d615c1... update
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->>>>>>> d73d615c1... update
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->>>>>>> d73d615c1... update
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->>>>>>> d73d615c1... update
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->>>>>>> d73d615c1... update
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->>>>>>> d73d615c1... update
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->>>>>>> d73d615c1... update
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->>>>>>> d73d615c1... update
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->>>>>>> d73d615c1... update
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->>>>>>> d73d615c1... update
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@@ -9482,7 +6743,6 @@
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-<<<<<<< HEAD
}
}
}
@@ -9611,36 +6871,21 @@
"dev": true,
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-=======
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->>>>>>> d73d615c1... update
}
}
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},
-<<<<<<< HEAD
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"integrity": "sha1-bWHeldkd/Km5oCCJrThL/49it3E=",
"dev": true
},
-=======
->>>>>>> d73d615c1... update
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-<<<<<<< HEAD
}
}
},
@@ -9721,43 +6966,6 @@
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}
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- "integrity": "sha1-MeohpzS6ubuw8yRm2JOupR5KPGQ=",
- "dev": true,
- "requires": {
- "is-buffer": "^1.1.5"
- }
- }
+ "p-limit": "^2.0.0"
}
},
- "isobject": {
- "version": "3.0.1",
- "resolved": "https://registry.npmjs.org/isobject/-/isobject-3.0.1.tgz",
- "integrity": "sha1-TkMekrEalzFjaqH5yNHMvP2reN8=",
+ "p-try": {
+ "version": "2.2.0",
+ "resolved": "https://registry.npmjs.org/p-try/-/p-try-2.2.0.tgz",
+ "integrity": "sha512-R4nPAVTAU0B9D35/Gk3uJf/7XYbQcyohSKdvAxIRSNghFl4e71hVoGnBNQz9cWaXxO2I10KTC+3jMdvvoKw6dQ==",
"dev": true
},
- "micromatch": {
- "version": "3.1.10",
- "resolved": "https://registry.npmjs.org/micromatch/-/micromatch-3.1.10.tgz",
- "integrity": "sha512-MWikgl9n9M3w+bpsY3He8L+w9eF9338xRl8IAO5viDizwSzziFEyUzo2xrrloB64ADbTf8uA8vRqqttDTOmccg==",
+ "pkg-dir": {
+ "version": "3.0.0",
+ "resolved": "https://registry.npmjs.org/pkg-dir/-/pkg-dir-3.0.0.tgz",
+ "integrity": "sha512-/E57AYkoeQ25qkxMj5PBOVgF8Kiu/h7cYS30Z5+R7WaiCCBfLq58ZI/dSeaEKb9WVJV5n/03QwrN3IeWIFllvw==",
"dev": true,
"requires": {
- "arr-diff": "^4.0.0",
- "array-unique": "^0.3.2",
- "braces": "^2.3.1",
- "define-property": "^2.0.2",
- "extend-shallow": "^3.0.2",
- "extglob": "^2.0.4",
- "fragment-cache": "^0.2.1",
- "kind-of": "^6.0.2",
- "nanomatch": "^1.2.9",
- "object.pick": "^1.3.0",
- "regex-not": "^1.0.0",
- "snapdragon": "^0.8.1",
- "to-regex": "^3.0.2"
+ "find-up": "^3.0.0"
}
- }
- }
- },
- "webpack-cli": {
- "version": "3.3.9",
- "resolved": "https://registry.npmjs.org/webpack-cli/-/webpack-cli-3.3.9.tgz",
- "integrity": "sha512-xwnSxWl8nZtBl/AFJCOn9pG7s5CYUYdZxmmukv+fAHLcBIHM36dImfpQg3WfShZXeArkWlf6QRw24Klcsv8a5A==",
- "dev": true,
- "requires": {
- "chalk": "2.4.2",
- "cross-spawn": "6.0.5",
- "enhanced-resolve": "4.1.0",
- "findup-sync": "3.0.0",
- "global-modules": "2.0.0",
- "import-local": "2.0.0",
- "interpret": "1.2.0",
- "loader-utils": "1.2.3",
- "supports-color": "6.1.0",
- "v8-compile-cache": "2.0.3",
- "yargs": "13.2.4"
- },
- "dependencies": {
- "enhanced-resolve": {
- "version": "4.1.0",
- "resolved": "https://registry.npmjs.org/enhanced-resolve/-/enhanced-resolve-4.1.0.tgz",
- "integrity": "sha512-F/7vkyTtyc/llOIn8oWclcB25KdRaiPBpZYDgJHgh/UHtpgT2p2eldQgtQnLtUvfMKPKxbRaQM/hHkvLHt1Vng==",
+ },
+ "pump": {
+ "version": "3.0.0",
+ "resolved": "https://registry.npmjs.org/pump/-/pump-3.0.0.tgz",
+ "integrity": "sha512-LwZy+p3SFs1Pytd/jYct4wpv49HiYCqd9Rlc5ZVdk0V+8Yzv6jR5Blk3TRmPL1ft69TxP0IMZGJ+WPFU2BFhww==",
+ "dev": true,
+ "requires": {
+ "end-of-stream": "^1.1.0",
+ "once": "^1.3.1"
+ }
+ },
+ "require-main-filename": {
+ "version": "2.0.0",
+ "resolved": "https://registry.npmjs.org/require-main-filename/-/require-main-filename-2.0.0.tgz",
+ "integrity": "sha512-NKN5kMDylKuldxYLSUfrbo5Tuzh4hd+2E8NPPX02mZtn1VuREQToYe/ZdlJy+J3uCpfaiGF05e7B8W0iXbQHmg==",
+ "dev": true
+ },
+ "string-width": {
+ "version": "3.1.0",
+ "resolved": "https://registry.npmjs.org/string-width/-/string-width-3.1.0.tgz",
+ "integrity": "sha512-vafcv6KjVZKSgz06oM/H6GDBrAtz8vdhQakGjFIvNrHA6y3HCF1CInLy+QLq8dTJPQ1b+KDUqDFctkdRW44e1w==",
+ "dev": true,
+ "requires": {
+ "emoji-regex": "^7.0.1",
+ "is-fullwidth-code-point": "^2.0.0",
+ "strip-ansi": "^5.1.0"
+ }
+ },
+ "strip-ansi": {
+ "version": "5.2.0",
+ "resolved": "https://registry.npmjs.org/strip-ansi/-/strip-ansi-5.2.0.tgz",
+ "integrity": "sha512-DuRs1gKbBqsMKIZlrffwlug8MHkcnpjs5VPmL1PAh+mA30U0DTotfDZ0d2UUsXpPmPmMMJ6W773MaA3J+lbiWA==",
"dev": true,
"requires": {
- "graceful-fs": "^4.1.2",
- "memory-fs": "^0.4.0",
- "tapable": "^1.0.0"
->>>>>>> d73d615c1... update
+ "ansi-regex": "^4.1.0"
}
},
"supports-color": {
@@ -10405,7 +7307,6 @@
"requires": {
"has-flag": "^3.0.0"
}
-<<<<<<< HEAD
},
"v8-compile-cache": {
"version": "2.0.3",
@@ -10452,8 +7353,6 @@
"camelcase": "^5.0.0",
"decamelize": "^1.2.0"
}
-=======
->>>>>>> d73d615c1... update
}
}
},
@@ -10501,83 +7400,16 @@
"integrity": "sha1-J1hIEIkUVqQXHI0CJkQa3pDLyus=",
"dev": true
},
-<<<<<<< HEAD
-=======
- "worker-farm": {
- "version": "1.7.0",
- "resolved": "https://registry.npmjs.org/worker-farm/-/worker-farm-1.7.0.tgz",
- "integrity": "sha512-rvw3QTZc8lAxyVrqcSGVm5yP/IJ2UcB3U0graE3LCFoZ0Yn2x4EoVSqJKdB/T5M+FLcRPjz4TDacRf3OCfNUzw==",
- "dev": true,
- "requires": {
- "errno": "~0.1.7"
- }
- },
- "wrap-ansi": {
- "version": "5.1.0",
- "resolved": "https://registry.npmjs.org/wrap-ansi/-/wrap-ansi-5.1.0.tgz",
- "integrity": "sha512-QC1/iN/2/RPVJ5jYK8BGttj5z83LmSKmvbvrXPNCLZSEb32KKVDJDl/MOt2N01qU2H/FkzEa9PKto1BqDjtd7Q==",
- "dev": true,
- "requires": {
- "ansi-styles": "^3.2.0",
- "string-width": "^3.0.0",
- "strip-ansi": "^5.0.0"
- },
- "dependencies": {
- "ansi-regex": {
- "version": "4.1.0",
- "resolved": "https://registry.npmjs.org/ansi-regex/-/ansi-regex-4.1.0.tgz",
- "integrity": "sha512-1apePfXM1UOSqw0o9IiFAovVz9M5S1Dg+4TrDwfMewQ6p/rmMueb7tWZjQ1rx4Loy1ArBggoqGpfqqdI4rondg==",
- "dev": true
- },
- "string-width": {
- "version": "3.1.0",
- "resolved": "https://registry.npmjs.org/string-width/-/string-width-3.1.0.tgz",
- "integrity": "sha512-vafcv6KjVZKSgz06oM/H6GDBrAtz8vdhQakGjFIvNrHA6y3HCF1CInLy+QLq8dTJPQ1b+KDUqDFctkdRW44e1w==",
- "dev": true,
- "requires": {
- "emoji-regex": "^7.0.1",
- "is-fullwidth-code-point": "^2.0.0",
- "strip-ansi": "^5.1.0"
- }
- },
- "strip-ansi": {
- "version": "5.2.0",
- "resolved": "https://registry.npmjs.org/strip-ansi/-/strip-ansi-5.2.0.tgz",
- "integrity": "sha512-DuRs1gKbBqsMKIZlrffwlug8MHkcnpjs5VPmL1PAh+mA30U0DTotfDZ0d2UUsXpPmPmMMJ6W773MaA3J+lbiWA==",
- "dev": true,
- "requires": {
- "ansi-regex": "^4.1.0"
- }
- }
- }
- },
->>>>>>> d73d615c1... update
"wrappy": {
"version": "1.0.2",
"resolved": "https://registry.npmjs.org/wrappy/-/wrappy-1.0.2.tgz",
"integrity": "sha1-tSQ9jz7BqjXxNkYFvA0QNuMKtp8=",
"dev": true
},
-<<<<<<< HEAD
"xtend": {
"version": "4.0.1",
"resolved": "https://registry.npmjs.org/xtend/-/xtend-4.0.1.tgz",
"integrity": "sha1-pcbVMr5lbiPbgg77lDofBJmNY68=",
-=======
- "write": {
- "version": "1.0.3",
- "resolved": "https://registry.npmjs.org/write/-/write-1.0.3.tgz",
- "integrity": "sha512-/lg70HAjtkUgWPVZhZcm+T4hkL8Zbtp1nFNOn3lRrxnlv50SRBv7cR7RqR+GMsd3hUXy9hWBo4CHTbFTcOYwig==",
- "dev": true,
- "requires": {
- "mkdirp": "^0.5.1"
- }
- },
- "xtend": {
- "version": "4.0.2",
- "resolved": "https://registry.npmjs.org/xtend/-/xtend-4.0.2.tgz",
- "integrity": "sha512-LKYU1iAXJXUgAXn9URjiu+MWhyUXHsvfp7mcuYm9dSUKK0/CjtrUwFAxD82/mCWbtLsGjFIad0wIsod4zrTAEQ==",
->>>>>>> d73d615c1... update
"dev": true
},
"y18n": {
@@ -10585,72 +7417,6 @@
"resolved": "https://registry.npmjs.org/y18n/-/y18n-4.0.0.tgz",
"integrity": "sha512-r9S/ZyXu/Xu9q1tYlpsLIsa3EeLXXk0VwlxqTcFRfg9EhMW+17kbt9G0NrgCmhGb5vT2hyhJZLfDGx+7+5Uj/w==",
"dev": true
-<<<<<<< HEAD
-=======
- },
- "yallist": {
- "version": "3.1.1",
- "resolved": "https://registry.npmjs.org/yallist/-/yallist-3.1.1.tgz",
- "integrity": "sha512-a4UGQaWPH59mOXUYnAG2ewncQS4i4F43Tv3JoAM+s2VDAmS9NsK8GpDMLrCHPksFT7h3K6TOoUNn2pb7RoXx4g==",
- "dev": true
- },
- "yargs": {
- "version": "13.2.4",
- "resolved": "https://registry.npmjs.org/yargs/-/yargs-13.2.4.tgz",
- "integrity": "sha512-HG/DWAJa1PAnHT9JAhNa8AbAv3FPaiLzioSjCcmuXXhP8MlpHO5vwls4g4j6n30Z74GVQj8Xa62dWVx1QCGklg==",
- "dev": true,
- "requires": {
- "cliui": "^5.0.0",
- "find-up": "^3.0.0",
- "get-caller-file": "^2.0.1",
- "os-locale": "^3.1.0",
- "require-directory": "^2.1.1",
- "require-main-filename": "^2.0.0",
- "set-blocking": "^2.0.0",
- "string-width": "^3.0.0",
- "which-module": "^2.0.0",
- "y18n": "^4.0.0",
- "yargs-parser": "^13.1.0"
- },
- "dependencies": {
- "ansi-regex": {
- "version": "4.1.0",
- "resolved": "https://registry.npmjs.org/ansi-regex/-/ansi-regex-4.1.0.tgz",
- "integrity": "sha512-1apePfXM1UOSqw0o9IiFAovVz9M5S1Dg+4TrDwfMewQ6p/rmMueb7tWZjQ1rx4Loy1ArBggoqGpfqqdI4rondg==",
- "dev": true
- },
- "string-width": {
- "version": "3.1.0",
- "resolved": "https://registry.npmjs.org/string-width/-/string-width-3.1.0.tgz",
- "integrity": "sha512-vafcv6KjVZKSgz06oM/H6GDBrAtz8vdhQakGjFIvNrHA6y3HCF1CInLy+QLq8dTJPQ1b+KDUqDFctkdRW44e1w==",
- "dev": true,
- "requires": {
- "emoji-regex": "^7.0.1",
- "is-fullwidth-code-point": "^2.0.0",
- "strip-ansi": "^5.1.0"
- }
- },
- "strip-ansi": {
- "version": "5.2.0",
- "resolved": "https://registry.npmjs.org/strip-ansi/-/strip-ansi-5.2.0.tgz",
- "integrity": "sha512-DuRs1gKbBqsMKIZlrffwlug8MHkcnpjs5VPmL1PAh+mA30U0DTotfDZ0d2UUsXpPmPmMMJ6W773MaA3J+lbiWA==",
- "dev": true,
- "requires": {
- "ansi-regex": "^4.1.0"
- }
- }
- }
- },
- "yargs-parser": {
- "version": "13.1.1",
- "resolved": "https://registry.npmjs.org/yargs-parser/-/yargs-parser-13.1.1.tgz",
- "integrity": "sha512-oVAVsHz6uFrg3XQheFII8ESO2ssAf9luWuAd6Wexsu4F3OtIW0o8IribPXYrD4WC24LWtPrJlGy87y5udK+dxQ==",
- "dev": true,
- "requires": {
- "camelcase": "^5.0.0",
- "decamelize": "^1.2.0"
- }
->>>>>>> d73d615c1... update
}
}
}
diff --git a/php/libraries/Utility.class.inc b/php/libraries/Utility.class.inc
index 633ca0634b4..f86fb94f02e 100644
--- a/php/libraries/Utility.class.inc
+++ b/php/libraries/Utility.class.inc
@@ -119,14 +119,16 @@ class Utility
/**
* Returns a list of sites in the database
*
- * @param bool $study_site If true only return sites that are
- * study sites according to the psc
- * table
+ * @param boolean $study_site if true only return study sites from psc
+ * table
+ * @param boolean $DCC Whether the DCC should be included or not
*
* @return array an associative array("center ID" => "site name")
*/
- static function getSiteList(bool $study_site = true): array
- {
+ static function getSiteList(
+ bool $study_site = true,
+ bool $DCC = true
+ ): array {
$factory = NDB_Factory::singleton();
$DB = $factory->database();
@@ -135,6 +137,10 @@ class Utility
if ($study_site) {
$query .= "WHERE Study_site='Y'";
}
+ if (!$DCC) {
+ $query .= " AND CenterID <> 1";
+ }
+
$result = $DB->pselect($query, array());
// fix the array
@@ -142,7 +148,6 @@ class Utility
foreach ($result as $row) {
$list[$row["CenterID"]] = $row["Name"];
}
- natcasesort($list);
return $list;
}
@@ -158,31 +163,17 @@ class Utility
* Note that even though CenterID is numeric, the array
* should be interpreted as an associative array since the keys
* refer to the centerID, not the array index.
+ *
+ * @deprecated
*/
static function getAssociativeSiteList(
bool $study_site = true,
bool $DCC = true
): array {
- $factory = NDB_Factory::singleton();
- $DB = $factory->database();
-
- // get the list of study sites - to be replaced by the Site object
- $query = "SELECT CenterID, Name FROM psc ";
- if ($study_site) {
- $query .= "WHERE Study_site='Y'";
- }
- if (!$DCC) {
- $query .= " AND CenterID <> 1";
- }
-
- $result = $DB->pselect($query, array());
-
- // fix the array
- $list = array();
- foreach ($result as $row) {
- $list[$row["CenterID"]] = $row["Name"];
- }
- return $list;
+ throw new \DeprecatedException(
+ ' This function is deprecated. Please use \Utility::getSiteList()'
+ . ' instead.'
+ );
}
/**
@@ -1005,5 +996,17 @@ class Utility
return $scan_types;
}
+
+ /**
+ * Append a forward slash to a path if it doesn't already exist
+ *
+ * @param string $path path to which the slash should be appended
+ *
+ * @return string
+ */
+ static function appendForwardSlash(string $path) : string
+ {
+ return rtrim($path, '/\\') . '/';
+ }
}
diff --git a/raisinbread/RB_files/RB_Config.sql b/raisinbread/RB_files/RB_Config.sql
index 4cad972980e..f62cdcc71d6 100644
--- a/raisinbread/RB_files/RB_Config.sql
+++ b/raisinbread/RB_files/RB_Config.sql
@@ -94,5 +94,7 @@ INSERT INTO `Config` (`ID`, `ConfigID`, `Value`) VALUES (97,70,'/data-raisinbrea
INSERT INTO `Config` (`ID`, `ConfigID`, `Value`) VALUES (98,93,'V1');
INSERT INTO `Config` (`ID`, `ConfigID`, `Value`) VALUES (99,101,'');
INSERT INTO `Config` (`ID`, `ConfigID`, `Value`) VALUES (102,19,'false');
+INSERT INTO `Config` (`ID`, `ConfigID`, `Value`) VALUES (103,102,'/data/document_repository_uploads/');
+INSERT INTO `Config` (`ID`, `ConfigID`, `Value`) VALUES (104,103,'/data/data_release_uploads/');
UNLOCK TABLES;
SET FOREIGN_KEY_CHECKS=1;
diff --git a/raisinbread/RB_files/RB_ConfigSettings.sql b/raisinbread/RB_files/RB_ConfigSettings.sql
index 5eadfcc5df5..b398d819b02 100644
--- a/raisinbread/RB_files/RB_ConfigSettings.sql
+++ b/raisinbread/RB_files/RB_ConfigSettings.sql
@@ -98,5 +98,7 @@ INSERT INTO `ConfigSettings` (`ID`, `Name`, `Description`, `Visible`, `AllowMult
INSERT INTO `ConfigSettings` (`ID`, `Name`, `Description`, `Visible`, `AllowMultiple`, `DataType`, `Parent`, `Label`, `OrderNumber`) VALUES (99,'usePwnedPasswordsAPI','Whether to query the Have I Been Pwned password API on password changes to prevent the usage of common and breached passwords',1,0,'boolean',1,'Enable \"Pwned Password\" check',22);
INSERT INTO `ConfigSettings` (`ID`, `Name`, `Description`, `Visible`, `AllowMultiple`, `DataType`, `Parent`, `Label`, `OrderNumber`) VALUES (100,'EnvironmentFile','Name of the environment file that need to be sourced for the imaging pipeline',1,0,'text',69,'Name of the environment file',20);
INSERT INTO `ConfigSettings` (`ID`, `Name`, `Description`, `Visible`, `AllowMultiple`, `DataType`, `Parent`, `Label`, `OrderNumber`) VALUES (101,'MINCToolsPath','Path to the MINC tools',1,0,'web_path',26,'Path to the MINC tools',12);
+INSERT INTO `ConfigSettings` (`ID`, `Name`, `Description`, `Visible`, `AllowMultiple`, `DataType`, `Parent`, `Label`, `OrderNumber`) VALUES (102,'documentRepositoryPath','Path to uploaded document repository files',1,0,'text',26,'Document Repository Upload Path',13);
+INSERT INTO `ConfigSettings` (`ID`, `Name`, `Description`, `Visible`, `AllowMultiple`, `DataType`, `Parent`, `Label`, `OrderNumber`) VALUES (103,'dataReleasePath','Path to uploaded data release files',1,0,'text',26,'Data Release Upload Path',14);
UNLOCK TABLES;
SET FOREIGN_KEY_CHECKS=1;
diff --git a/raisinbread/config/config.xml b/raisinbread/config/config.xml
index 5322c2b7381..dbe8e93c350 100644
--- a/raisinbread/config/config.xml
+++ b/raisinbread/config/config.xml
@@ -20,8 +20,8 @@
%USERNAME%
%PASSWORD%
%DATABASE%
-
%USERNAME%
-
%PASSWORD%
+
%USERNAME%
+
%PASSWORD%
Example database
diff --git a/raisinbread/migration.md b/raisinbread/migration.md
index 0dabaf770e1..5fb3f154c62 100644
--- a/raisinbread/migration.md
+++ b/raisinbread/migration.md
@@ -55,5 +55,7 @@
2019-11-25-Default_value_for_session_submitted.sql
# NEW
+2019-10-09_move_MINCToolsPath_configuration_to_Config_tables.sql
+2019-11-29-Add_upload_directory_configuration.sql
# CLEAN-UP
\ No newline at end of file
diff --git a/docs/LorisCS.xml b/test/LorisCS.xml
similarity index 100%
rename from docs/LorisCS.xml
rename to test/LorisCS.xml
diff --git a/docs/LorisPHPMD.xml b/test/LorisPHPMD.xml
similarity index 100%
rename from docs/LorisPHPMD.xml
rename to test/LorisPHPMD.xml
diff --git a/docs/SrcCS.xml b/test/SrcCS.xml
similarity index 100%
rename from docs/SrcCS.xml
rename to test/SrcCS.xml
diff --git a/test/UnitTestGuide.md b/test/UnitTestGuide.md
index 7824a4b96ec..bcfb21b8513 100644
--- a/test/UnitTestGuide.md
+++ b/test/UnitTestGuide.md
@@ -20,9 +20,6 @@ Note that integration tests are run by Travis via GitHub and out of the scope of
## Setup
-**
A note on Branching:** LORIS test development should be done on the _major_ branch by convention. However links in this guide sometimes point to the branch holding the latest release (_master)_.
-
-
### **Setting up your Test Dev Environment**
A very similar set-up guide can be found in the [README.md](https://github.com/aces/Loris/blob/master/test/README.md) in the test directory.
@@ -57,7 +54,7 @@ Run the command `npm run tests:unit` to execute all unit tests. The first time t
### **How to Run Tests**
-To run all unit tests under [test/unittests](https://github.com/aces/Loris/tree/major/test/unittests), use the command below. (Run this from the LORIS root directory and NOT inside the test directory.)
+To run all unit tests under [test/unittests](https://github.com/aces/Loris/tree/master/test/unittests), use the command below. (Run this from the LORIS root directory and NOT inside the test directory.)
`npm run tests:unit`
@@ -123,19 +120,19 @@ If any tests produce a failure or error, a big red error message will appear in
`"tests:unit": "./test/dockerized-unit-tests.sh"`
-So, the script runs the contents of [test/dockerized-unit-tests.sh](https://github.com/aces/Loris/blob/major/test/dockerized-unit-tests.sh). If we take a look at this file, it runs the unit tests using docker-compose and vendor/bin/phpunit. It specifies which tests to run with this line:
+So, the script runs the contents of [test/dockerized-unit-tests.sh](https://github.com/aces/Loris/blob/master/test/dockerized-unit-tests.sh). If we take a look at this file, it runs the unit tests using docker-compose and vendor/bin/phpunit. It specifies which tests to run with this line:
`--configuration test/phpunit.xml --testsuite LorisUnitTests $*`
-The list of tests to run is defined in [test/phpunit.xml](https://github.com/aces/Loris/blob/major/test/phpunit.xml) under the “LorisUnitTests” testsuite section. If you look at this testsuite block, you can see that it refers to every file in the `test/unittests/` directory!
+The list of tests to run is defined in [test/phpunit.xml](https://github.com/aces/Loris/blob/master/test/phpunit.xml) under the “LorisUnitTests” testsuite section. If you look at this testsuite block, you can see that it refers to every file in the `test/unittests/` directory!
### **Troubleshooting**
**General Errors:**
-If the _major_ branch has been updated on the Loris repo, and your test-dev environment is now out of sync (branch and/or database) you will see seemingly unrelated errors like:
+If the remote branch has been updated on the LORIS repository and your test-dev environment is now out of sync (branch and/or database) you will see seemingly unrelated errors like:
Example A:
@@ -150,9 +147,9 @@ ERROR: Service 'unit-tests' failed to build: The command '/bin/sh -c apt-get upd
**How to fix:**
-You will need to update your environment to the major branch:
+You will need to update your environment to include the latest changes from LORIS.
-Rebase your branch and update your database. It is convenient to reload a backup of your database and then run the patches needed to update it to _major_. **Only** reload a backup of your database if nothing else is working!
+Rebase your branch and update your database. It is convenient to reload a backup of your database and then run the patches needed to update it. **Only** reload a backup of your database if nothing else is working!
After rebasing, you will need to run these commands, which resets your docker-compose environment.
@@ -278,7 +275,7 @@ Here is an example of this, taken from [Loris_PHPUnit_Database_TestCase.php](htt
[PHPUnit documentation](https://phpunit.readthedocs.io/en/8.2/writing-tests-for-phpunit.html#data-providers)
-Example Implementation: [test/unittests/UtilityTest.php::testCalculateAgeFormat](https://github.com/aces/Loris/blob/major/test/unittests/UtilityTest.php#L200)
+Example Implementation: [test/unittests/UtilityTest.php::testCalculateAgeFormat](https://github.com/aces/Loris/blob/master/test/unittests/UtilityTest.php#L200)
Data providers are used to provide an array of different inputs to a test.
@@ -432,7 +429,7 @@ This will make testing a lot easier. See issues #[4989](https://github.com/aces/
**1. With the ‘pselect’-style database method**
- Example implementation: [test/unittests/UtilityTest.php](https://github.com/aces/Loris/blob/major/test/unittests/UtilityTest.php) -- Not including the first 2 tests!
+ Example implementation: [test/unittests/UtilityTest.php](https://github.com/aces/Loris/blob/master/test/unittests/UtilityTest.php) -- Not including the first 2 tests!
@@ -519,7 +516,7 @@ public function testExample()
**2. With the ‘setFakeTableData’ database method**
-Example implementation: [test/unittests/UserTest.php](https://github.com/aces/Loris/blob/major/test/unittests/UserTest.php)
+Example implementation: [test/unittests/UserTest.php](https://github.com/aces/Loris/blob/master/test/unittests/UserTest.php)
**This is not a ‘pure’ unit test because it does not use a mock database! Instead, you are
essentially creating a database object and inputting fake tables into it, which means that these tests usually take longer to execute.**
@@ -620,7 +617,7 @@ $this->_dbMock->setFakeTableData(
**Important:**
-**The table should only be added once**. So, setFakeTableData should never be included in the setUp method because you will get a “Table already exists” error after the first test is run. If you create some helper method, like “_setUpFakeTables” that adds tables that will be used in every test, **it should still only be run once**, like in the first test. See [test/unittests/UserTest.php](https://github.com/aces/Loris/blob/major/test/unittests/UserTest.php) on the major branch for an example.
+**The table should only be added once**. So, setFakeTableData should never be included in the setUp method because you will get a “Table already exists” error after the first test is run. If you create some helper method, like “_setUpFakeTables” that adds tables that will be used in every test, **it should still only be run once**, like in the first test. See [test/unittests/UserTest.php](https://github.com/aces/Loris/blob/master/test/unittests/UserTest.php) for an example.
Once the tables that the query uses are added, you can test the method as normal, and the query should run on the “fake” database you’ve created!
diff --git a/test/config.xml b/test/config.xml
index 37fa559937c..c709021ae95 100644
--- a/test/config.xml
+++ b/test/config.xml
@@ -21,8 +21,8 @@
SQLTestUser
TestPassword
LorisTest
-
SQLTestUser
-
TestPassword
+
SQLTestUser
+
TestPassword
Example database
@@ -39,7 +39,7 @@
-
+
random
diff --git a/test/run-php-linter.sh b/test/run-php-linter.sh
index e98d5692615..cf479c90ccc 100755
--- a/test/run-php-linter.sh
+++ b/test/run-php-linter.sh
@@ -9,12 +9,12 @@ find docs modules htdocs php src -name '*.class.inc' -print0 -o -name '*.php' -p
# php/
# htdocs/
# modules/
-vendor/bin/phpcs --standard=docs/LorisCS.xml --extensions=php,inc php/ htdocs/ modules/ || exit $?;
+vendor/bin/phpcs --standard=test/LorisCS.xml --extensions=php,inc php/ htdocs/ modules/ || exit $?;
# Run PHPCS on some scripts -- fixing the files format later
# vendor/bin/phpcs --standard=docs/LorisCS.xml tools/CouchDB_Confirm_Integrity.php
# Run PHPCS on src/ directory using a different ruleset conforming to PSR2.
-vendor/bin/phpcs --standard=docs/SrcCS.xml --extensions=php/php src/ || exit $?;
+vendor/bin/phpcs --standard=test/SrcCS.xml --extensions=php/php src/ || exit $?;
-vendor/bin/phpmd php/libraries text docs/LorisPHPMD.xml || exit $?;
+vendor/bin/phpmd php/libraries text 'test/LorisPHPMD.xml' || exit $?;
diff --git a/test/unittests/UtilityTest.php b/test/unittests/UtilityTest.php
index 7e2733490ca..176f1d48229 100644
--- a/test/unittests/UtilityTest.php
+++ b/test/unittests/UtilityTest.php
@@ -403,10 +403,9 @@ public function testGetVisitList()
* TODO Potential edge cases: test with the study_site and DCC booleans as false
*
* @covers Utility::getSiteList()
- * @covers Utility::getAssociativeSiteList
* @return void
*/
- public function testGetSiteListAndGetAssociativeSiteList()
+ public function testGetSiteList()
{
$this->_dbMock->expects($this->any())
->method('pselect')
@@ -419,13 +418,6 @@ public function testGetSiteListAndGetAssociativeSiteList()
'2' => 'site2'),
Utility::getSiteList()
);
-
- $this->assertEquals(
- array(
- '1' => 'site1',
- '2' => 'site2'),
- Utility::getAssociativeSiteList()
- );
}
/**
diff --git a/tools/exporters/DB_dump_table_data.php b/tools/exporters/DB_dump_table_data.php
index 3e7af255c13..083c725d538 100644
--- a/tools/exporters/DB_dump_table_data.php
+++ b/tools/exporters/DB_dump_table_data.php
@@ -36,13 +36,13 @@
array("dbn"=>$databaseInfo['database'])
);
-$dbUser = $databaseInfo["quatUser"];
-$dbPassword = $databaseInfo["quatPassword"];
+$adminUser = $databaseInfo["adminUser"];
+$adminPassword = $databaseInfo["adminPassword"];
$dbHost = $databaseInfo["host"];
-if (empty($dbUser) || empty($dbPassword) || empty($dbHost)) {
+if (empty($adminUser) || empty($adminPassword) || empty($dbHost)) {
echo "\n\n Some database credentials are missing, please ensure administrator
- credentials (quatUser, quatPassword) and a host value are available in your
+ credentials (adminUser, adminPassword) and a host value are available in your
configuration file. \n\n";
die();
}
@@ -71,7 +71,7 @@
foreach ($tableNames as $tableName) {
$paths = \NDB_Config::singleton()->getSetting('paths');
$filename = $paths['base'] . "/raisinbread/RB_files/RB_$tableName.sql";
- exec('mysqldump -u '.escapeshellarg($dbUser).' -p'.escapeshellarg($dbPassword).' -h '.escapeshellarg($dbHost).' '.
+ exec('mysqldump -u '.escapeshellarg($adminUser).' -p'.escapeshellarg($adminPassword).' -h '.escapeshellarg($dbHost).' '.
escapeshellarg($databaseInfo['database']).' '.
'--complete-insert '.
'--no-create-db '.
diff --git a/tools/install.sh b/tools/install.sh
index 875abe353cf..3c8aa755791 100755
--- a/tools/install.sh
+++ b/tools/install.sh
@@ -117,7 +117,6 @@ mkdir -p ../smarty/templates_c
# Setting 770 permissions for templates_c
chmod 770 ../smarty/templates_c
-# Changing group to 'www-data' or 'apache' to give permission to create directories in Document Repository module
# Detecting distribution
if ! os_distro=$(hostnamectl 2>/dev/null)
then
@@ -130,20 +129,12 @@ debian=("Debian" "Ubuntu")
redhat=("Red" "CentOS" "Fedora" "Oracle")
if [[ " ${debian[*]} " =~ " $os_distro " ]]; then
- mkdir -p ../modules/document_repository/user_uploads
- mkdir -p ../modules/data_release/user_uploads
- sudo chown www-data.www-data ../modules/document_repository/user_uploads
- sudo chown www-data.www-data ../modules/data_release/user_uploads
sudo chown www-data.www-data ../smarty/templates_c
# Make Apache the group for project directory, so that the web based install
# can write the config.xml file.
sudo chgrp www-data ../project
sudo chmod 770 ../project
elif [[ " ${redhat[*]} " =~ " $os_distro " ]]; then
- mkdir -p ../modules/document_repository/user_uploads
- mkdir -p ../modules/data_release/user_uploads
- sudo chown apache.apache ../modules/document_repository/user_uploads
- sudo chown apache.apache ../modules/data_release/user_uploads
sudo chown apache.apache ../smarty/templates_c
# Make Apache the group for project directory, so that the web based install
# can write the config.xml file.
@@ -152,8 +143,6 @@ elif [[ " ${redhat[*]} " =~ " $os_distro " ]]; then
else
echo "$os_distro Linux distribution detected. We currently do not support this. "
echo "Please manually change subdirectory ownership and permissions to ensure the web server can read *and write* in the following: "
- echo "../modules/data_release/user_uploads "
- echo "../modules/document_repository/user_uploads "
echo "../smarty/templates_c "
echo ""
fi
diff --git a/tools/single_use/Engine_Change_MyISAM_to_INNODB.php b/tools/single_use/Engine_Change_MyISAM_to_INNODB.php
index 13cd716e9f8..e5d9b3567f3 100644
--- a/tools/single_use/Engine_Change_MyISAM_to_INNODB.php
+++ b/tools/single_use/Engine_Change_MyISAM_to_INNODB.php
@@ -19,8 +19,8 @@
$dbConfig = $config->getSetting("database");
$adminDB = Database::singleton(
$dbConfig["database"],
- $dbConfig["quatUser"],
- $dbConfig["quatPassword"],
+ $dbConfig["adminUser"],
+ $dbConfig["adminPassword"],
$dbConfig["host"],
true
);
+
+[](https://travis-ci.org/aces/Loris) [](https://acesloris.readthedocs.io/en/latest/?badge=latest)
# LORIS Neuroimaging Platform
@@ -27,7 +29,7 @@ Deploy and log in with username *admin* and the password that's set up during de
* Apache **2.4** or higher
* MySQL >= 5.7 (or MariaDB >= 10.3)
* PHP 7.2 or higher
- * [Composer](https://getcomposer.org/)
+ * [Composer](https://getcomposer.org/) 1.4 or higher
* NodeJS 8.0 or higher
* NPM
* make
@@ -86,6 +88,8 @@ sudo service apache2 reload
6. Go to http://localhost/installdb.php and follow the instructions to finalize LORIS installation, then restart apache.
+If you use MySQL 8, please read [this link](https://www.php.net/manual/en/mysqli.requirements.php) and also [this](https://dev.mysql.com/doc/refman/8.0/en/upgrading-from-previous-series.html#upgrade-caching-sha2-password-compatible-connectors).
+
7. Follow the [Setup Guide in the LORIS Wiki](https://github.com/aces/Loris/wiki/Setup) to complete your post-installation setup and configuration, and for more documentation.
## Community
@@ -112,4 +116,3 @@ LORIS is made by staff developers at the McGill Centre for Integrative Neuroscie
See [LORIS.ca](www.loris.ca) for our current team, the history of LORIS, and our **Technical Papers**.
The original (pre-GitHub) LORIS development team from 1999-2010 included: Dario Vins, Alex Zijdenbos, Jonathan Harlap, Matt Charlet, Andrew Corderey, Sebastian Muehlboeck, and Samir Das.
-
diff --git a/SQL/0000-00-03-ConfigTables.sql b/SQL/0000-00-03-ConfigTables.sql
index 8f341181b3e..e2d69cf173e 100644
--- a/SQL/0000-00-03-ConfigTables.sql
+++ b/SQL/0000-00-03-ConfigTables.sql
@@ -75,6 +75,8 @@ INSERT INTO ConfigSettings (Name, Description, Visible, AllowMultiple, DataType,
INSERT INTO ConfigSettings (Name, Description, Visible, AllowMultiple, DataType, Parent, Label, OrderNumber) SELECT 'publication_uploads', 'Path to uploaded publications', 1, 0, 'web_path', ID, 'Publications', 10 FROM ConfigSettings WHERE Name="paths";
INSERT INTO ConfigSettings (Name, Description, Visible, AllowMultiple, DataType, Parent, Label, OrderNumber) SELECT 'publication_deletions', 'Path to deleted publications', 1, 0, 'web_path', ID, 'Deleted Publications', 11 FROM ConfigSettings WHERE Name="paths";
INSERT INTO ConfigSettings (Name, Description, Visible, AllowMultiple, DataType, Parent, Label, OrderNumber) SELECT 'MINCToolsPath', 'Path to the MINC tools', 1, 0, 'web_path', ID, 'Path to the MINC tools', 12 FROM ConfigSettings WHERE Name="paths";
+INSERT INTO ConfigSettings (Name, Description, Visible, AllowMultiple, DataType, Parent, Label, OrderNumber) SELECT 'documentRepositoryPath', 'Path to uploaded document repository files', 1, 0, 'web_path', ID, 'Document Repository Upload Path', 13 FROM ConfigSettings WHERE Name="paths";
+INSERT INTO ConfigSettings (Name, Description, Visible, AllowMultiple, DataType, Parent, Label, OrderNumber) SELECT 'dataReleasePath', 'Path to uploaded data release files', 1, 0, 'web_path', ID, 'Data release Upload Path', 14 FROM ConfigSettings WHERE Name="paths";
INSERT INTO ConfigSettings (Name, Description, Visible, AllowMultiple, Label, OrderNumber) VALUES ('gui', 'Settings related to the overall display of LORIS', 1, 0, 'GUI', 3);
diff --git a/SQL/New_patches/2019-11-29-Add_upload_directory_configuration.sql b/SQL/New_patches/2019-11-29-Add_upload_directory_configuration.sql
new file mode 100644
index 00000000000..f056928a409
--- /dev/null
+++ b/SQL/New_patches/2019-11-29-Add_upload_directory_configuration.sql
@@ -0,0 +1,9 @@
+INSERT INTO ConfigSettings (Name, Description, Visible, AllowMultiple, DataType, Parent, Label, OrderNumber) SELECT 'documentRepositoryPath', 'Path to uploaded document repository files', 1, 0, 'text', cs1.ID, 'Document Repository Upload Path', MAX(cs2.OrderNumber)+1 FROM ConfigSettings cs1 JOIN ConfigSettings cs2 WHERE cs1.Name="paths" AND cs2.parent=cs1.ID;
+INSERT INTO ConfigSettings (Name, Description, Visible, AllowMultiple, DataType, Parent, Label, OrderNumber) SELECT 'dataReleasePath', 'Path to uploaded data release files', 1, 0, 'text', cs1.ID, 'Data Release Upload Path', MAX(cs2.OrderNumber)+1 FROM ConfigSettings cs1 JOIN ConfigSettings cs2 WHERE cs1.Name="paths" AND cs2.parent=cs1.ID;
+
+-- For backwards compatibility, check the previous base and default to same folder as previous setting
+SELECT Value INTO @base FROM Config c JOIN ConfigSettings cs ON cs.ID=c.ConfigID WHERE cs.Name="base";
+
+INSERT INTO Config (ConfigID, Value) SELECT ID, CONCAT(@base,"modules/document_repository/user_uploads/") FROM ConfigSettings WHERE Name="documentRepositoryPath";
+INSERT INTO Config (ConfigID, Value) SELECT ID, CONCAT(@base,"modules/data_release/user_uploads/") FROM ConfigSettings WHERE Name="dataReleasePath";
+
diff --git a/composer.json b/composer.json
index d2842e3c615..4c84ba4e8c8 100644
--- a/composer.json
+++ b/composer.json
@@ -17,7 +17,7 @@
},
"require-dev" : {
"squizlabs/php_codesniffer" : "3.5.1",
- "phpunit/phpunit" : "6.5.*",
+ "phpunit/phpunit" : "7.0.0",
"facebook/webdriver" : "dev-master",
"phan/phan": ">=2.3.0",
"phpmd/phpmd": "~2.7"
diff --git a/composer.lock b/composer.lock
index 09bf47fb861..432676d2bc1 100644
--- a/composer.lock
+++ b/composer.lock
@@ -4,7 +4,7 @@
"Read more about it at https://getcomposer.org/doc/01-basic-usage.md#installing-dependencies",
"This file is @generated automatically"
],
- "content-hash": "452d13ceaefc6c44b75fdc15ff38bdc7",
+ "content-hash": "197bb71364923c86ba65e1cde21aa424",
"packages": [
{
"name": "bjeavons/zxcvbn-php",
@@ -1732,40 +1732,40 @@
},
{
"name": "phpunit/php-code-coverage",
- "version": "5.3.2",
+ "version": "6.0.5",
"source": {
"type": "git",
"url": "https://github.com/sebastianbergmann/php-code-coverage.git",
- "reference": "c89677919c5dd6d3b3852f230a663118762218ac"
+ "reference": "4cab20a326d14de7575a8e235c70d879b569a57a"
},
"dist": {
"type": "zip",
- "url": "https://api.github.com/repos/sebastianbergmann/php-code-coverage/zipball/c89677919c5dd6d3b3852f230a663118762218ac",
- "reference": "c89677919c5dd6d3b3852f230a663118762218ac",
+ "url": "https://api.github.com/repos/sebastianbergmann/php-code-coverage/zipball/4cab20a326d14de7575a8e235c70d879b569a57a",
+ "reference": "4cab20a326d14de7575a8e235c70d879b569a57a",
"shasum": ""
},
"require": {
"ext-dom": "*",
"ext-xmlwriter": "*",
- "php": "^7.0",
+ "php": "^7.1",
"phpunit/php-file-iterator": "^1.4.2",
"phpunit/php-text-template": "^1.2.1",
- "phpunit/php-token-stream": "^2.0.1",
+ "phpunit/php-token-stream": "^3.0",
"sebastian/code-unit-reverse-lookup": "^1.0.1",
- "sebastian/environment": "^3.0",
+ "sebastian/environment": "^3.1",
"sebastian/version": "^2.0.1",
"theseer/tokenizer": "^1.1"
},
"require-dev": {
- "phpunit/phpunit": "^6.0"
+ "phpunit/phpunit": "^7.0"
},
"suggest": {
- "ext-xdebug": "^2.5.5"
+ "ext-xdebug": "^2.6.0"
},
"type": "library",
"extra": {
"branch-alias": {
- "dev-master": "5.3.x-dev"
+ "dev-master": "6.0-dev"
}
},
"autoload": {
@@ -1791,7 +1791,7 @@
"testing",
"xunit"
],
- "time": "2018-04-06T15:36:58+00:00"
+ "time": "2018-05-28T11:49:20+00:00"
},
{
"name": "phpunit/php-file-iterator",
@@ -1883,28 +1883,28 @@
},
{
"name": "phpunit/php-timer",
- "version": "1.0.9",
+ "version": "2.1.2",
"source": {
"type": "git",
"url": "https://github.com/sebastianbergmann/php-timer.git",
- "reference": "3dcf38ca72b158baf0bc245e9184d3fdffa9c46f"
+ "reference": "1038454804406b0b5f5f520358e78c1c2f71501e"
},
"dist": {
"type": "zip",
- "url": "https://api.github.com/repos/sebastianbergmann/php-timer/zipball/3dcf38ca72b158baf0bc245e9184d3fdffa9c46f",
- "reference": "3dcf38ca72b158baf0bc245e9184d3fdffa9c46f",
+ "url": "https://api.github.com/repos/sebastianbergmann/php-timer/zipball/1038454804406b0b5f5f520358e78c1c2f71501e",
+ "reference": "1038454804406b0b5f5f520358e78c1c2f71501e",
"shasum": ""
},
"require": {
- "php": "^5.3.3 || ^7.0"
+ "php": "^7.1"
},
"require-dev": {
- "phpunit/phpunit": "^4.8.35 || ^5.7 || ^6.0"
+ "phpunit/phpunit": "^7.0"
},
"type": "library",
"extra": {
"branch-alias": {
- "dev-master": "1.0-dev"
+ "dev-master": "2.1-dev"
}
},
"autoload": {
@@ -1919,7 +1919,7 @@
"authors": [
{
"name": "Sebastian Bergmann",
- "email": "sb@sebastian-bergmann.de",
+ "email": "sebastian@phpunit.de",
"role": "lead"
}
],
@@ -1928,33 +1928,33 @@
"keywords": [
"timer"
],
- "time": "2017-02-26T11:10:40+00:00"
+ "time": "2019-06-07T04:22:29+00:00"
},
{
"name": "phpunit/php-token-stream",
- "version": "2.0.2",
+ "version": "3.1.1",
"source": {
"type": "git",
"url": "https://github.com/sebastianbergmann/php-token-stream.git",
- "reference": "791198a2c6254db10131eecfe8c06670700904db"
+ "reference": "995192df77f63a59e47f025390d2d1fdf8f425ff"
},
"dist": {
"type": "zip",
- "url": "https://api.github.com/repos/sebastianbergmann/php-token-stream/zipball/791198a2c6254db10131eecfe8c06670700904db",
- "reference": "791198a2c6254db10131eecfe8c06670700904db",
+ "url": "https://api.github.com/repos/sebastianbergmann/php-token-stream/zipball/995192df77f63a59e47f025390d2d1fdf8f425ff",
+ "reference": "995192df77f63a59e47f025390d2d1fdf8f425ff",
"shasum": ""
},
"require": {
"ext-tokenizer": "*",
- "php": "^7.0"
+ "php": "^7.1"
},
"require-dev": {
- "phpunit/phpunit": "^6.2.4"
+ "phpunit/phpunit": "^7.0"
},
"type": "library",
"extra": {
"branch-alias": {
- "dev-master": "2.0-dev"
+ "dev-master": "3.1-dev"
}
},
"autoload": {
@@ -1977,20 +1977,20 @@
"keywords": [
"tokenizer"
],
- "time": "2017-11-27T05:48:46+00:00"
+ "time": "2019-09-17T06:23:10+00:00"
},
{
"name": "phpunit/phpunit",
- "version": "6.5.14",
+ "version": "7.0.0",
"source": {
"type": "git",
"url": "https://github.com/sebastianbergmann/phpunit.git",
- "reference": "bac23fe7ff13dbdb461481f706f0e9fe746334b7"
+ "reference": "9b3373439fdf2f3e9d1578f5e408a3a0d161c3bc"
},
"dist": {
"type": "zip",
- "url": "https://api.github.com/repos/sebastianbergmann/phpunit/zipball/bac23fe7ff13dbdb461481f706f0e9fe746334b7",
- "reference": "bac23fe7ff13dbdb461481f706f0e9fe746334b7",
+ "url": "https://api.github.com/repos/sebastianbergmann/phpunit/zipball/9b3373439fdf2f3e9d1578f5e408a3a0d161c3bc",
+ "reference": "9b3373439fdf2f3e9d1578f5e408a3a0d161c3bc",
"shasum": ""
},
"require": {
@@ -2002,15 +2002,15 @@
"myclabs/deep-copy": "^1.6.1",
"phar-io/manifest": "^1.0.1",
"phar-io/version": "^1.0",
- "php": "^7.0",
+ "php": "^7.1",
"phpspec/prophecy": "^1.7",
- "phpunit/php-code-coverage": "^5.3",
+ "phpunit/php-code-coverage": "^6.0",
"phpunit/php-file-iterator": "^1.4.3",
"phpunit/php-text-template": "^1.2.1",
- "phpunit/php-timer": "^1.0.9",
- "phpunit/phpunit-mock-objects": "^5.0.9",
+ "phpunit/php-timer": "^2.0",
+ "phpunit/phpunit-mock-objects": "^6.0",
"sebastian/comparator": "^2.1",
- "sebastian/diff": "^2.0",
+ "sebastian/diff": "^3.0",
"sebastian/environment": "^3.1",
"sebastian/exporter": "^3.1",
"sebastian/global-state": "^2.0",
@@ -2018,16 +2018,12 @@
"sebastian/resource-operations": "^1.0",
"sebastian/version": "^2.0.1"
},
- "conflict": {
- "phpdocumentor/reflection-docblock": "3.0.2",
- "phpunit/dbunit": "<3.0"
- },
"require-dev": {
"ext-pdo": "*"
},
"suggest": {
"ext-xdebug": "*",
- "phpunit/php-invoker": "^1.1"
+ "phpunit/php-invoker": "^2.0"
},
"bin": [
"phpunit"
@@ -2035,7 +2031,7 @@
"type": "library",
"extra": {
"branch-alias": {
- "dev-master": "6.5.x-dev"
+ "dev-master": "7.0-dev"
}
},
"autoload": {
@@ -2061,33 +2057,30 @@
"testing",
"xunit"
],
- "time": "2019-02-01T05:22:47+00:00"
+ "time": "2018-02-02T05:04:08+00:00"
},
{
"name": "phpunit/phpunit-mock-objects",
- "version": "5.0.10",
+ "version": "6.1.2",
"source": {
"type": "git",
"url": "https://github.com/sebastianbergmann/phpunit-mock-objects.git",
- "reference": "cd1cf05c553ecfec36b170070573e540b67d3f1f"
+ "reference": "f9756fd4f43f014cb2dca98deeaaa8ce5500a36e"
},
"dist": {
"type": "zip",
- "url": "https://api.github.com/repos/sebastianbergmann/phpunit-mock-objects/zipball/cd1cf05c553ecfec36b170070573e540b67d3f1f",
- "reference": "cd1cf05c553ecfec36b170070573e540b67d3f1f",
+ "url": "https://api.github.com/repos/sebastianbergmann/phpunit-mock-objects/zipball/f9756fd4f43f014cb2dca98deeaaa8ce5500a36e",
+ "reference": "f9756fd4f43f014cb2dca98deeaaa8ce5500a36e",
"shasum": ""
},
"require": {
"doctrine/instantiator": "^1.0.5",
- "php": "^7.0",
+ "php": "^7.1",
"phpunit/php-text-template": "^1.2.1",
"sebastian/exporter": "^3.1"
},
- "conflict": {
- "phpunit/phpunit": "<6.0"
- },
"require-dev": {
- "phpunit/phpunit": "^6.5.11"
+ "phpunit/phpunit": "^7.0"
},
"suggest": {
"ext-soap": "*"
@@ -2095,7 +2088,7 @@
"type": "library",
"extra": {
"branch-alias": {
- "dev-master": "5.0.x-dev"
+ "dev-master": "6.1-dev"
}
},
"autoload": {
@@ -2121,7 +2114,7 @@
"xunit"
],
"abandoned": true,
- "time": "2018-08-09T05:50:03+00:00"
+ "time": "2018-05-29T13:54:20+00:00"
},
{
"name": "psr/container",
@@ -2390,28 +2383,29 @@
},
{
"name": "sebastian/diff",
- "version": "2.0.1",
+ "version": "3.0.2",
"source": {
"type": "git",
"url": "https://github.com/sebastianbergmann/diff.git",
- "reference": "347c1d8b49c5c3ee30c7040ea6fc446790e6bddd"
+ "reference": "720fcc7e9b5cf384ea68d9d930d480907a0c1a29"
},
"dist": {
"type": "zip",
- "url": "https://api.github.com/repos/sebastianbergmann/diff/zipball/347c1d8b49c5c3ee30c7040ea6fc446790e6bddd",
- "reference": "347c1d8b49c5c3ee30c7040ea6fc446790e6bddd",
+ "url": "https://api.github.com/repos/sebastianbergmann/diff/zipball/720fcc7e9b5cf384ea68d9d930d480907a0c1a29",
+ "reference": "720fcc7e9b5cf384ea68d9d930d480907a0c1a29",
"shasum": ""
},
"require": {
- "php": "^7.0"
+ "php": "^7.1"
},
"require-dev": {
- "phpunit/phpunit": "^6.2"
+ "phpunit/phpunit": "^7.5 || ^8.0",
+ "symfony/process": "^2 || ^3.3 || ^4"
},
"type": "library",
"extra": {
"branch-alias": {
- "dev-master": "2.0-dev"
+ "dev-master": "3.0-dev"
}
},
"autoload": {
@@ -2436,9 +2430,12 @@
"description": "Diff implementation",
"homepage": "https://github.com/sebastianbergmann/diff",
"keywords": [
- "diff"
+ "diff",
+ "udiff",
+ "unidiff",
+ "unified diff"
],
- "time": "2017-08-03T08:09:46+00:00"
+ "time": "2019-02-04T06:01:07+00:00"
},
{
"name": "sebastian/environment",
diff --git a/docs/HelpStyleGuide.md b/docs/HelpStyleGuide.md
new file mode 100644
index 00000000000..db2316ba6c2
--- /dev/null
+++ b/docs/HelpStyleGuide.md
@@ -0,0 +1,68 @@
+# Style Guide for User-Facing Help Text in LORIS
+
+Help text exists as an on-screen guide for users, to add context and provide instructions to using all of the features in LORIS. It is always accessed by clicking the question mark in the top right menu bar in LORIS, as seen below:
+
+
+
+## How to Store and Name Files
+
+Help text content is stored into the aces/Loris repo as markdown (.md) files within the help/subdirectory of the module it belongs to. For example, the Help text for Imaging Browser main page is located here: `modules/imaging_browser/help/imaging_browser.md`.
+
+Some modules have more than one Help text file to correspond with subpages. These files exist in the same `help/` folder, but are named differently - they must match exactly the php/file name that spawns the page. For example, the Imaging Browser module has a subpage called “ViewSession”. Its Help file is stored as: `modules/imaging_browser/help/viewsession.md`.
+
+## Markdown
+
+Formatting should follow markdown guidelines, with some exceptions. This is because LORIS’s current markdown renderer may not cover all possible markdown features (e.g. bullets). Help text cannot be formatted with HTML so it should not be included in Help text. When creating a markdown file, use only the following styles, or else talk to the LORIS technical team about expanding our Markdown features:
+
+* `*Italics*`
+* `**Bold**`
+* `***Italics and Bold***`
+* `# Heading 1` up to `###### Heading 6`
+ * Use `#H1` for the name of the module at the beginning of the Help text
+ * Use `#H2` for any subheadings
+ * Use `#H4` for sub-subheadings
+* Avoid using HTML line break (`