From 66f9ce29f6fe100cf29b6d99e8248dea78a1d06b Mon Sep 17 00:00:00 2001 From: Alex Knoll <37813606+knoll-alex@users.noreply.github.com> Date: Fri, 29 Nov 2019 14:23:17 -0500 Subject: [PATCH] [Documentation] Created a README.md for imaging_qc module (#5634) Add README file for imaging_qc module. --- modules/imaging_qc/README.md | 31 +++++++++++++++++++++++++++++++ 1 file changed, 31 insertions(+) create mode 100644 modules/imaging_qc/README.md diff --git a/modules/imaging_qc/README.md b/modules/imaging_qc/README.md new file mode 100644 index 00000000000..a5d698564c7 --- /dev/null +++ b/modules/imaging_qc/README.md @@ -0,0 +1,31 @@ +## Imaging Quality Control Module + +#### Purpose +The purpose of this module is to verify and help ensure imaging data has been uploaded into LORIS and reviewed for Quality Control (QC). It provides a queryable interface to check at a glance the completeness of imaging data collection for a study, and the status of QC review processes on them. + +Note: this module is not the module in which visual/radiological QC is performed on scans, just the module in which QC assessments are *reviewed*. Links are included in this module so the user can jump to the Imaging Browser to mark QC assessments on images and visits. + +#### Intended Users +This module is used by study administrators, imaging scientists, analysts, coordinators, and clinicians. + +#### Scope +The Imaging QC module allows you to view specific data on uploaded image files, with many additional filtering options. The resulting table has a column for QC status, so you can see whether the upload has passed QC or not. The table provides a link to each file. You can download the table in `.csv` format. + +Note: To QC a scan, the user must click the link leading to the Imaging Browser, and enter the QC details in that module. + +#### Configurations + +* This module will not load without the `mri_parameter_form` instrument installed and properly configured. Each scan type (identified below via the Configuration module) should have an equivalent _scan_done_ column in the database table for this instrument. +> A sample MRI Parameter Form is available with our sample dataset in this repo: `raisinbread/instruments/NDB_BVL_Instrument_mri_parameter_form.class.inc`, and should be customized and installed for your project. (Please consult our online Setup Guide for more information.) + +* The `tblScanTypes` Configuration setting allows customization of which modalities are displayed in this module. + +#### Permissions +The `quality_control` permission gives users access to this module and its features. + +#### Interactions With LORIS + +* Imaging Browser: presents info about and links to QC and scans, for the scan types specified in the Configuration module (as noted above) +* Imaging Uploader : the name of the user who uploaded the scan is displayed in this module +* Dicom Archive: Tarchive detected +* MRI parameter form: Completeness of form and Scan Done are displayed, for this instrument