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SPADES 4.0 continous can't run tests at build time #1426

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lokapal opened this issue Dec 19, 2024 · 0 comments
Open
1 task done

SPADES 4.0 continous can't run tests at build time #1426

lokapal opened this issue Dec 19, 2024 · 0 comments

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@lokapal
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lokapal commented Dec 19, 2024

Description of bug

  1. wget https://github.com/ablab/spades/archive/refs/tags/continuous.tar.gz
  2. tar -xf continuous.tar.gz
  3. cd spades-continuous
  4. ./spades_compile.sh -j 64 -t
    long-long-compiling skipped, but at last:
    ./spades_compile.sh: line 239: /Test.Bacteria/SPADES/spades-continuous/spades.py: No such file or directory
    python3 --version: Python 3.10.13
    python --version: Python 2.7.18
    Ubuntu 22.04.5, kernel 6.8.0-49
    It seems that build script tries to call spades from the current directory, not from the spades-continuous/bin, where it is located.

spades.log

./spades_compile.sh: line 239: /Test.Bacteria/SPADES/spades-continuous/spades.py: No such file or directory

params.txt

No run, so no params

SPAdes version

SPAdes 4.0.0-continuous

Operating System

Ubuntu 22.04.5

Python Version

3.10.13

Method of SPAdes installation

manual

No errors reported in spades.log

  • Yes
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