-
Notifications
You must be signed in to change notification settings - Fork 1
/
samples.json
102 lines (101 loc) · 9.69 KB
/
samples.json
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
{
"PXD007740" : {
"ftp" : "ftp://ftp.ebi.ac.uk/pride-archive/2018/07/PXD007740/",
"samples" : ["ctr_2h_R1_IMAC_1.raw", "ctr_2h_R2_IMAC_1.raw", "ctr_2h_R3_IMAC_1.raw"],
"search_params" : "config/PXD007740.comet.params",
"pyascore_params" : "config/PXD007740.pyascore.params"
},
"MSV000079068" : {
"ftp" : "ftp://massive.ucsd.edu/MSV000079068/raw/TitrationCurves/",
"samples" : ["F20140627_TS_CST_TitrationCurve_Rep1_2mgPeptides_25ug.raw",
"F20140627_TS_CST_TitrationCurve_Rep2_2mgPeptides_25ug.raw",
"F20140627_TS_CST_TitrationCurve_Rep3_2mgPeptides_25ug.raw"],
"search_params" : "config/MSV000079068.comet.params",
"pyascore_params" : "config/MSV000079068.pyascore.params"
},
"PXD007145" : {
"ftp" : "http://ftp.ebi.ac.uk/pride-archive/2018/03/PXD007145/",
"samples" : ["20160718_LUMOS1_nLC13_AH_TMT10plex-SanJose-HCDMS2_1_160718220637.raw",
"20160718_LUMOS1_nLC13_AH_TMT10plex-SanJose-HCDMS2_2_160719122437.raw",
"20160718_LUMOS1_nLC13_AH_TMT10plex-SanJose-HCDMS2_3.raw"],
"search_params" : "config/PXD007145.comet.params",
"pyascore_params" : "config/PXD007145.pyascore.params"
},
"PXD000138-HCD" : {
"ftp" : "ftp://ftp.ebi.ac.uk/pride-archive/2013/05/PXD000138/",
"samples" : ["1.raw", "2.raw", "3.raw", "4.raw", "5.raw", "6.raw",
"7.raw", "8.raw", "9.raw", "10.raw", "11.raw", "12.raw",
"13.raw", "14.raw", "15.raw", "16.raw", "17.raw", "18.raw",
"19.raw", "20.raw", "21.raw", "22.raw", "23.raw", "24.raw",
"25.raw", "26.raw", "27.raw", "28.raw", "29.raw", "30.raw",
"31.raw", "32.raw", "33.raw", "34.raw", "35.raw", "36.raw",
"37.raw", "38.raw", "39.raw", "40.raw", "41.raw", "42.raw",
"43.raw", "44.raw", "45.raw", "46.raw", "47.raw", "48.raw",
"49.raw", "50.raw", "51.raw", "52.raw", "53.raw", "54.raw",
"55.raw", "56.raw", "57.raw", "58.raw", "59.raw", "60.raw",
"61.raw", "62.raw", "63.raw", "64.raw", "65.raw", "66.raw",
"67.raw", "68.raw", "69.raw", "70.raw", "71.raw", "72.raw",
"73.raw", "74.raw", "75.raw", "76.raw", "77.raw", "78.raw",
"79.raw", "80.raw", "81.raw", "82.raw", "83.raw", "84.raw",
"85.raw", "86.raw", "87.raw", "88.raw", "89.raw", "90.raw",
"91.raw", "92.raw", "93.raw", "94.raw", "95.raw", "96.raw"],
"search_params" : "config/PXD000138-HCD.comet.params",
"pyascore_params" : "config/PXD000138-HCD.pyascore.params"
},
"PXD000138-ETD" : {
"ftp" : "ftp://ftp.ebi.ac.uk/pride-archive/2013/05/PXD000138/",
"samples" : ["OR4_120313_LIM_Pep38_run01_FTETD_UPLC.raw", "OR4_120313_LIM_Pep38_run02_FTETD_UPLC.raw", "OR4_120313_LIM_Pep38_run03_FTETD_UPLC.raw",
"OR4_120313_LIM_Pep38_run04_FTETD_UPLC.raw", "OR4_120313_LIM_Pep38_run05_FTETD_UPLC.raw", "OR4_120313_LIM_Pep38_run06_FTETD_UPLC.raw",
"OR4_120313_LIM_Pep38_run07_FTETD_UPLC.raw", "OR4_120313_LIM_Pep38_run08_FTETD_UPLC.raw", "OR4_120313_LIM_Pep38_run09_FTETD_UPLC.raw",
"OR4_120313_LIM_Pep38_run10_FTETD_UPLC.raw", "OR4_120313_LIM_Pep38_run11_FTETD_UPLC.raw", "OR4_120313_LIM_Pep38_run12_FTETD_UPLC.raw",
"OR4_120313_LIM_Pep38_run13_FTETD_UPLC.raw", "OR4_120313_LIM_Pep38_run14_FTETD_UPLC.raw", "OR4_120313_LIM_Pep38_run16_FTETD_UPLC.raw",
"OR4_120313_LIM_Pep38_run17_FTETD_UPLC.raw", "OR4_120313_LIM_Pep38_run21_FTETD_UPLC.raw", "OR4_120313_LIM_Pep38_run22_FTETD_UPLC.raw",
"OR4_120313_LIM_Pep38_run23_FTETD_UPLC.raw", "OR4_120313_LIM_Pep38_run24_FTETD_UPLC.raw", "OR4_120313_LIM_Pep38_run25_FTETD_UPLC.raw",
"OR4_120313_LIM_Pep38_run26_FTETD_UPLC.raw", "OR4_120313_LIM_Pep38_run27_FTETD_UPLC.raw", "OR4_120313_LIM_Pep38_run28_FTETD_UPLC.raw",
"OR4_120313_LIM_Pep38_run29_FTETD_UPLC.raw", "OR4_120313_LIM_Pep38_run30_FTETD_UPLC.raw", "OR4_120313_LIM_Pep38_run31_FTETD_UPLC.raw",
"OR4_120313_LIM_Pep38_run32_FTETD_UPLC.raw", "OR4_120313_LIM_Pep38_run33_FTETD_UPLC.raw", "OR4_120313_LIM_Pep38_run51_FTETD_UPLC.raw",
"OR4_120313_LIM_Pep38_run86_FTETD_UPLC.raw", "OR4_120321_LIM_Pep38_run34_FTETD_UPLC.raw", "OR4_120321_LIM_Pep38_run35_FTETD_UPLC.raw",
"OR4_120321_LIM_Pep38_run36_FTETD_UPLC.raw", "OR4_120321_LIM_Pep38_run37_FTETD_UPLC.raw", "OR4_120321_LIM_Pep38_run38_FTETD_UPLC.raw",
"OR4_120321_LIM_Pep38_run39_FTETD_UPLC.raw", "OR4_120321_LIM_Pep38_run40_FTETD_UPLC.raw", "OR4_120321_LIM_Pep38_run41_FTETD_UPLC.raw",
"OR4_120321_LIM_Pep38_run42_FTETD_UPLC.raw", "OR4_120321_LIM_Pep38_run43_FTETD_UPLC.raw", "OR4_120321_LIM_Pep38_run44_FTETD_UPLC.raw",
"OR4_120321_LIM_Pep38_run45_FTETD_UPLC.raw", "OR4_120321_LIM_Pep38_run46_FTETD_UPLC.raw", "OR4_120321_LIM_Pep38_run47_FTETD_UPLC.raw",
"OR4_120321_LIM_Pep38_run48_FTETD_UPLC.raw", "OR4_120321_LIM_Pep38_run50_FTETD_UPLC.raw", "OR4_120321_LIM_Pep38_run52_FTETD_UPLC.raw",
"OR4_120321_LIM_Pep38_run53_FTETD_UPLC.raw", "OR4_120321_LIM_Pep38_run54_FTETD_UPLC.raw", "OR4_120321_LIM_Pep38_run55_FTETD_UPLC.raw",
"OR4_120321_LIM_Pep38_run56_FTETD_UPLC.raw", "OR4_120321_LIM_Pep38_run57_FTETD_UPLC.raw", "OR4_120321_LIM_Pep38_run59_FTETD_UPLC.raw",
"OR4_120321_LIM_Pep38_run60_FTETD_UPLC.raw", "OR4_120321_LIM_Pep38_run61_FTETD_UPLC.raw", "OR4_120321_LIM_Pep38_run62_FTETD_UPLC.raw",
"OR4_120321_LIM_Pep38_run63_FTETD_UPLC.raw", "OR4_120321_LIM_Pep38_run64_FTETD_UPLC.raw", "OR4_120321_LIM_Pep38_run65_FTETD_UPLC.raw",
"OR4_120321_LIM_Pep38_run66_FTETD_UPLC.raw", "OR4_120321_LIM_Pep38_run67_FTETD_UPLC.raw", "OR4_120321_LIM_Pep38_run68_FTETD_UPLC.raw",
"OR4_120321_LIM_Pep38_run69_FTETD_UPLC.raw", "OR4_120321_LIM_Pep38_run70_FTETD_UPLC.raw", "OR4_120321_LIM_Pep38_run71_FTETD_UPLC.raw",
"OR4_120321_LIM_Pep38_run72_FTETD_UPLC.raw", "OR4_120321_LIM_Pep38_run73_FTETD_UPLC.raw", "OR4_120321_LIM_Pep38_run74_FTETD_UPLC.raw",
"OR4_120321_LIM_Pep38_run75_FTETD_UPLC.raw", "OR4_120321_LIM_Pep38_run76_FTETD_UPLC.raw", "OR4_120321_LIM_Pep38_run77_FTETD_UPLC.raw",
"OR4_120321_LIM_Pep38_run78_FTETD_UPLC.raw", "OR4_120321_LIM_Pep38_run79_FTETD_UPLC.raw", "OR4_120321_LIM_Pep38_run80_FTETD_UPLC.raw",
"OR4_120330_LIM_Pep38_run58_FTETD_UPLC.raw", "OR4_120330_LIM_Pep38_run81_FTETD_UPLC.raw", "OR4_120330_LIM_Pep38_run82_FTETD_UPLC.raw",
"OR4_120330_LIM_Pep38_run83_FTETD_UPLC.raw", "OR4_120330_LIM_Pep38_run84_FTETD_UPLC.raw", "OR4_120330_LIM_Pep38_run85_FTETD_UPLC.raw",
"OR4_120330_LIM_Pep38_run87_FTETD_UPLC.raw", "OR4_120330_LIM_Pep38_run88_FTETD_UPLC.raw", "OR4_120330_LIM_Pep38_run89_FTETD_UPLC.raw",
"OR4_120330_LIM_Pep38_run90_FTETD_UPLC.raw", "OR4_120330_LIM_Pep38_run91_FTETD_UPLC.raw", "OR4_120330_LIM_Pep38_run92_FTETD_UPLC.raw",
"OR4_120330_LIM_Pep38_run93_FTETD_UPLC.raw", "OR4_120330_LIM_Pep38_run94_FTETD_UPLC.raw", "OR4_120330_LIM_Pep38_run95_FTETD_UPLC.raw"],
"search_params" : "config/PXD000138-ETD.comet.params",
"pyascore_params" : "config/PXD000138-ETD.pyascore.params"
},
"PXD000759" : {
"ftp" : "http://ftp.ebi.ac.uk/pride-archive/2014/08/PXD000759/",
"samples" : ["lib01_direct.raw", "lib02_direct.raw", "lib03_direct.raw", "lib04_direct.raw", "lib05_direct.raw", "lib06_direct.raw",
"lib07_direct.raw", "lib08_direct.raw", "lib09_direct.raw", "lib10_direct.raw", "lib11_direct.raw", "lib12_direct.raw",
"lib13_direct.raw", "lib14_direct.raw", "lib15_direct.raw", "lib16_direct.raw", "lib17_direct.raw", "lib18_direct.raw",
"lib19_direct.raw", "lib20_direct.raw", "lib21_direct.raw", "lib22_direct.raw", "lib23_direct.raw", "lib24_direct.raw",
"lib25_direct.raw", "lib26_direct.raw", "lib27_direct.raw", "lib28_direct.raw", "lib29_direct.raw", "lib30_direct.raw",
"lib31_direct.raw", "lib32_direct.raw", "lib33_direct.raw", "lib34_direct.raw", "lib35_direct.raw", "lib36_direct.raw",
"lib37_direct.raw", "lib38_direct.raw", "lib39_direct.raw", "lib40_direct.raw", "lib41_direct.raw", "lib42_direct.raw",
"lib43_direct.raw", "lib44_direct.raw", "lib45_direct.raw", "lib46_direct.raw", "lib47_direct.raw", "lib48_direct.raw",
"lib49_direct.raw", "lib50_direct.raw", "lib51_direct.raw", "lib52_direct.raw", "lib53_direct.raw", "lib54_direct.raw",
"lib55_direct.raw", "lib56_direct.raw", "lib57_direct.raw", "lib58_direct.raw", "lib59_direct.raw", "lib60_direct.raw",
"lib61_direct.raw", "lib62_direct.raw", "lib63_direct.raw", "lib64_direct.raw", "lib65_direct.raw", "lib66_direct.raw",
"lib67_direct.raw", "lib68_direct.raw", "lib69_direct.raw", "lib70_direct.raw", "lib71_direct.raw", "lib72_direct.raw",
"lib73_direct.raw", "lib74_direct.raw", "lib75_direct.raw", "lib76_direct.raw", "lib77_direct.raw", "lib78_direct.raw",
"lib79_direct.raw", "lib80_direct.raw", "lib81_direct.raw", "lib82_direct.raw", "lib83_direct.raw", "lib84_direct.raw",
"lib85_direct.raw", "lib86_direct.raw", "lib87_direct.raw", "lib88_direct.raw", "lib89_direct.raw", "lib90_direct.raw",
"lib91_direct.raw", "lib92_direct.raw", "lib93_direct.raw", "lib94_direct.raw", "lib95_direct.raw", "lib96_direct.raw"],
"search_params" : "config/PXD000759.comet.params",
"pyascore_params" : "config/PXD000759.pyascore.params"
}
}