Issues with setup for GeneSys

[InputBlackBoxOutput]

Hi,

I found a couple of issues with the setup for GeneSys which you guys would like to address. I have included my solution for the issue which might be sub-optimal.

• URL not defined in setup.py line 104:
  Define URL="" globally

• Module pygraphviz requires system packages:
  sudo apt-get install python3-dev graphviz libgraphviz-dev pkg-config

• Required module not in requirements.txt

  • dill
  • pytools
  • sympy
  • networkx
  • indexed
  • numproto
  • onnx
  • onnxoptimizer
  • onnxruntime
  • tqdm
  • fxpmath
  • torchvision

• Misleading reference to polymath module since there exists a incorrect polymath module on PyPi
  Download correct polymath module from https://github.com/he-actlab/polymath

• Incorrect non-PyPI dependency setup
  Move following directories into tools: codelets, examples & polymath

• Incorrect dependency in /home/blackbox/Desktop/VeriGOOD/genesys/genesys/tools/examples/genesys/genesys_network_sim.py line 7:
  from compile_layer import store_compilation_output

Cheers!