From fba4bdf403c26a74d5acab18e8db6b983ce05cfa Mon Sep 17 00:00:00 2001 From: gvegayon Date: Sun, 9 Jun 2024 00:42:41 +0000 Subject: [PATCH] Commit from GitHub Actions (Build it) --- README.md | 204 ++++++++++++++++++++++++++---------------------------- 1 file changed, 100 insertions(+), 104 deletions(-) diff --git a/README.md b/README.md index ae0c32c..16a5f43 100644 --- a/README.md +++ b/README.md @@ -9,154 +9,150 @@ document updated once a week or whenever there’s a push or pull request. It performs a search on PubMed looking for the latest papers about Agent-Based Models. The last -update was on 2024-06-02 00:40:52. +update was on 2024-06-09 00:42:38.
-1. **Evaluating targeted COVID-19 vaccination strategies with - agent-based modeling.** +1. **Analysis of rural broadband adoption dynamics: A theory-driven + agent-based model.** - Hladish TJ, Pillai AN, Pearson CAB, Toh KB, Tamayo AC, Stoltzfus A, - Longini IM. + Agarwal A, Canfield C. - PLoS Comput Biol. 2024 May 31;20(5):e1012128. doi: - 10.1371/journal.pcbi.1012128. Online ahead of print. + PLoS One. 2024 Jun 6;19(6):e0302146. doi: + 10.1371/journal.pone.0302146. eCollection 2024. - > We evaluate approaches to vaccine distribution using an - > agent-based model of human activity and COVID-19 transmission - > calibrated to detailed trends in cases, hospitalizations, deaths, - > seroprevalence, and vaccine breakthrough infections in Florida, - > USA. … + > However, there is typically insufficient data available to + > understand consumer attitudes. We propose using an agent-based + > model grounded in the Theory of Planned Behavior, a behavioral + > theory that explains the consumer’s decision-making process. The + > model … -2. **Graphical analysis of agent-based opinion formation models.** +2. **Elucidating the interaction between stretch and stiffness using an + agent-based spring network model of progressive pulmonary + fibrosis.** - Devia CA, Giordano G. + Hall JK, Bates JHT, Krishnan R, Kim JH, Deng Y, Lutchen KR, Suki B. - PLoS One. 2024 May 30;19(5):e0303204. doi: - 10.1371/journal.pone.0303204. eCollection 2024. + Front Netw Physiol. 2024 May 22;4:1396383. doi: + 10.3389/fnetp.2024.1396383. eCollection 2024. - > Agent-based models of opinion formation are becoming increasingly - > complex, because of their size and of the embedding of several - > individual psychological traits of the agents, aimed at - > realistically capturing the multifaceted aspects of social - > interaction. .. … + > Pulmonary fibrosis is a deadly disease that involves the + > dysregulation of fibroblasts and myofibroblasts, which are + > mechanosensitive. Previous computational models have succeeded in + > modeling stiffness-mediated fibroblasts behaviors; however, these + > models have … -3. **Habitat remediation followed by managed connectivity reduces - unwanted changes in evolutionary trajectory of high extirpation risk - populations.** +3. **How can agent-based modelling provide new insights into the impact + of minimum unit pricing in Scotland?** - Lamka GF, Willoughby JR. + Boyd J, Holmes J, Gibbs N, Buckley C, Purshouse R, Meier P. - PLoS One. 2024 May 30;19(5):e0304276. doi: - 10.1371/journal.pone.0304276. eCollection 2024. + Drug Alcohol Rev. 2024 Jun 5. doi: 10.1111/dar.13880. Online ahead + of print. - > Unfortunately, monitoring changes in genetic diversity from - > management actions such as assisted migration and predicting the - > extent of introduced genetic variation that is needed to prevent - > extirpation is difficult and costly in situ. Therefore, we - > designed an agent-bas … + > ., balance between on-licence and off-licence outlets), lead to + > long-term population-level trends (e.g., youth drinking) and + > social harms (e.g., violence). Agent-based modelling captures + > heterogeneity, emergence, feedback loops and adaptive and dynamic + > featur … -4. **Incorporating endogenous human behavior in models of COVID-19 - transmission: A systematic scoping review.** +4. **Game-theoretic agent-based modelling of micro-level conflict: + Evidence from the ISIS-Kurdish war.** - Hamilton A, Haghpanah F, Tulchinsky A, Kipshidze N, Poleon S, Lin G, - Du H, Gardner L, Klein E. + Macmillan-Scott O, Ünver A, Musolesi M. - Dialogues Health. 2024 May 7;4:100179. doi: - 10.1016/j.dialog.2024.100179. eCollection 2024 Jun. + PLoS One. 2024 Jun 5;19(6):e0297483. doi: + 10.1371/journal.pone.0297483. eCollection 2024. - > Fewer models incorporated behavior endogenously (e.g., dynamically - > changing a model parameter throughout the simulation). …Similarly, - > 15% used a network model, 11% used an agent-based model, 7% used a - > system dynamics model, and 1 … + > This article delves into the dynamics of a dyadic political + > violence case study in Rojava, Northern Syria, focusing on the + > conflict between Kurdish rebels and ISIS from January 1, 2017, to + > December 31, 2019. We employ agent-based modelling and a + > formalisation … -5. **In silico study of heterogeneous tumour-derived organoid response - to CAR T-cell therapy.** +5. **COVID-19 outbreaks in residential aged care facilities: an + agent-based modeling study.** - Luque LM, Carlevaro CM, Rodriguez-Lomba E, Lomba E. + McAndrew F, Sacks-Davis R, Abeysuriya RG, Delport D, West D, Parta + I, Majumdar S, Hellard M, Scott N. - Sci Rep. 2024 May 29;14(1):12307. doi: 10.1038/s41598-024-63125-5. + Front Public Health. 2024 May 21;12:1344916. doi: + 10.3389/fpubh.2024.1344916. eCollection 2024. - > While understanding antigen heterogeneity is important for - > effective therapeutics, a good therapy strategy could enhance the - > therapy efficiency. In this work we introduce an agent-based model - > (ABM), built upon a previous ABM, to rationalise the outcomes of - > di … + > INTRODUCTION: A disproportionate number of COVID-19 deaths occur + > in Residential Aged Care Facilities (RACFs), where better evidence + > is needed to target COVID-19 interventions to prevent mortality. + > This study used an agent-based model to assess the role of com … -6. **Optimizing Solid Tumor Treatment with Antibody-drug Conjugates - Using Agent-Based Modeling: Considering the Role of a Carrier Dose - and Payload Class.** +6. **Pleiotropy alleviates the fitness costs associated with resource + allocation trade-offs in immune signalling networks.** - Calopiz MC, Linderman JJ, Thurber GM. + Martin RA, Tate AT. - Pharm Res. 2024 May 28. doi: 10.1007/s11095-024-03715-0. Online - ahead of print. + Proc Biol Sci. 2024 Jun;291(2024):20240446. doi: + 10.1098/rspb.2024.0446. Epub 2024 Jun 5. - > OBJECTIVE: In this work, we study two carrier dose regimens: 1) - > matching payload potency to cellular delivery but potentially not - > reaching cells farther away from blood vessels, or 2) dosing to - > tumor saturation but risking a reduction in cell killing from a - > lower amount of payloa … + > To investigate factors that could influence the evolutionary + > maintenance of pleiotropy in gene networks, we developed an + > agent-based model of co-evolution between parasites and hosts. + > Hosts comprise signalling networks that must faithfully complete a + > developm … -7. **An agent-based model of the spread of behavioural risk-factors for - cardiovascular disease in city-scale populations.** +7. **Agent-based model demonstrates the impact of nonlinear, complex + interactions between cytokinces on muscle regeneration.** - Archbold J, Clohessy S, Herath D, Griffiths N, Oyebode O. + Haase M, Comlekoglu T, Petrucciani A, Peirce SM, Blemker SS. - PLoS One. 2024 May 28;19(5):e0303051. doi: - 10.1371/journal.pone.0303051. eCollection 2024. + Elife. 2024 Jun 3;13:RP91924. doi: 10.7554/eLife.91924. - > Exploiting these social influences may lead to effective and - > efficient public health interventions to prevent CVD. This project - > aimed to construct and validate an agent-based model (ABM) of how - > the four major behavioural risk-factors for CVD spread through so - > … + > To understand the degree to which individual cellular behaviors + > impact endogenous mechanisms of muscle recovery, we developed an + > agent-based model (ABM) using the Cellular-Potts framework to + > simulate the dynamic microenvironment of a cross-section of murine + > s … -8. **Advancing autologous CAR T-cell therapy through real-time patient - health data integration: a simulation-based approach.** +8. **Surrogate Modeling and Control of Medical Digital Twins.** - Tseng CY, Wang K, Lin LH, Zhang C, White CC 3rd, Wang B. + Fonseca LL, Böttcher L, Mehrad B, Laubenbacher RC. - Cytotherapy. 2024 May 6:S1465-3249(24)00707-2. doi: - 10.1016/j.jcyt.2024.05.001. Online ahead of print. + ArXiv \[Preprint\]. 2024 May 20:arXiv:2402.05750v2. - > SimPAC integrates system dynamics and agent-based simulation - > techniques, facilitating the adaptation of manufacturing processes - > and production schedules based on real-time patient health - > conditions. SimPAC can model various patient disease progressions - > using … + > This paper introduces surrogate modeling algorithms for the + > purpose of optimal control applications. As a use case, we focus + > on agent-based models (ABMs), a common model type in biomedicine + > for which there are no readily available optimal contro … -9. **Feedback between stochastic gene networks and population dynamics - enables cellular decision-making.** +9. **Spatial interactions modulate tumor growth and immune + infiltration.** - Piho P, Thomas P. + West J, Marzban S, Srivast S, Kartika S, Bravo R, Safriel R, Zarski + A, Anderson A, Chung C, Amelio A. - Sci Adv. 2024 May 24;10(21):eadl4895. doi: 10.1126/sciadv.adl4895. - Epub 2024 May 24. + Res Sq \[Preprint\]. 2024 May 22:rs.3.rs-3962451. doi: + 10.21203/rs.3.rs-3962451/v1. - > Such noise arises from fluctuations in reactions synthesizing - > proteins and plays a crucial role in how cells make decisions and - > respond to stress or drugs. We propose a general stochastic - > agent-based model for growing populations capturing the feedback - > betwee … + > Historically, agent-based models of cancer progression have been + > constructed with rules that govern birth, death and migration, + > with attempts to map local rules to emergent global growth + > dynamics. …Lenia is subsequently used to develop data-informed + > mode … -10. **The Efficacy and Safety of Tandem Transplant Versus Single Stem - Cell Transplant for Multiple Myeloma Patients: A Systematic Review - and Meta-Analysis.** +10. **Liquid-like condensates that bind actin drive filament + polymerization and bundling.** - Chen YH, Fogel L, Sun AY, Yang C, Patel R, Chang WC, Chen PH, Jhou - HJ, Chen YC, Dai MS, Lee CH. + Walker C, Chandrasekaran A, Mansour D, Graham K, Torres A, Wang L, + Lafer EM, Rangamani P, Stachowiak JC. - Diagnostics (Basel). 2024 May 16;14(10):1030. doi: - 10.3390/diagnostics14101030. + bioRxiv \[Preprint\]. 2024 May 22:2024.05.04.592527. doi: + 10.1101/2024.05.04.592527. - > The primary outcomes were progression-free survival (PFS), overall - > survival (OS), overall response rate (ORR), complete response rate - > (CRR), and treatment-related mortality (TRM). We used a - > random-effects model to calculate pooled hazard ratios (HRs) and - > relative risks (RR … + > To probe the minimum requirements for condensate-mediated actin + > bundling, we developed an agent-based computational model. Guided + > by its predictions, we hypothesized that any condensate-forming + > protein that binds actin could bundle filaments through multivale + > … ## Code of Conduct