Adding gitdep file and gitdep in install. also update the deps

Author: llaniewski

.gitdeps

@@ -0,0 +1,2 @@
+src/ https://github.com/CFD-GO/MPI_MPMD.git MPMD.hpp
+src/ https://github.com/CFD-GO/RemoteForceInterface.git RemoteForceInterface.cpp RemoteForceInterface.h RemoteForceInterface.hpp

src/MPMD.hpp

@@ -39,8 +39,10 @@ inline void MPI_Exchange(void * out, int out_count, void * in, int in_count, MPI
 
 template <typename T> inline MPI_Datatype MPI_Auto_datatype();
 template <> inline MPI_Datatype MPI_Auto_datatype< int >() { return MPI_INT; }
+template <> inline MPI_Datatype MPI_Auto_datatype< unsigned int >() { return MPI_UNSIGNED; }
+template <> inline MPI_Datatype MPI_Auto_datatype< long int >() { return MPI_LONG; }
+template <> inline MPI_Datatype MPI_Auto_datatype< unsigned long int >() { return MPI_UNSIGNED_LONG; }
 template <> inline MPI_Datatype MPI_Auto_datatype< char >() { return MPI_CHAR; }
-template <> inline MPI_Datatype MPI_Auto_datatype< size_t >() { return MPI_LONG; }
 
 template <class T> inline T MPI_Exchange(T& out, MPI_Comm intercomm, MPI_Comm comm) {
    T ret;
@@ -57,12 +59,12 @@ inline int MPI_Exchange(int& out, MPI_Comm intercomm, MPI_Comm comm) {
 
 template <class T>
 inline T MPI_Exchange_container(T& out, MPI_Comm intercomm, MPI_Comm comm) {
-   int my_size = out.size();
-   int other_size = MPI_Exchange(my_size, intercomm, comm);
-   int mx = my_size;
+   size_t my_size = out.size();
+   size_t other_size = MPI_Exchange(my_size, intercomm, comm);
+   size_t mx = my_size;
    if (other_size > mx) mx = other_size;
    T ret;
-   for (int i=0; i<mx; i++) {
+   for (size_t i=0; i<mx; i++) {
       typename T::value_type a,b;
       if (i < my_size) a = out[i];
       b = MPI_Exchange(a, intercomm, comm);
@@ -83,9 +85,9 @@ inline std::string MPI_Exchange(std::string& out, MPI_Comm intercomm, MPI_Comm c
 
 
 class MPMDHelper {
-   static char * char_vec_from_string( std::string str, int size) {
+   static char * char_vec_from_string( std::string str, size_t size) {
       char * ret = new char[size];
-      int i=0;
+      size_t i=0;
       for (; i<str.size(); i++) ret[i] = str[i];
       for (; i<size; i++) ret[i] = '\0';
       return ret;

src/RemoteForceInterface.hpp

@@ -18,7 +18,12 @@ namespace rfi {
 #define safe_MPI_Type_free(datatype) { if ((*datatype) != NULL) MPI_Type_free(datatype); }
 
 template < rfi_type_t TYPE, rfi_rot_t ROT, rfi_storage_t STORAGE, typename rfi_real_t >
-RemoteForceInterface < TYPE, ROT, STORAGE, rfi_real_t >::RemoteForceInterface() : workers(0), masters(0), intercomm(MPI_COMM_NULL), totsize(0), ntab(0) {
+RemoteForceInterface < TYPE, ROT, STORAGE, rfi_real_t >::RemoteForceInterface() {
+   workers = 0;
+   masters = 0;
+   intercomm = MPI_COMM_NULL;
+   totsize = 0;
+   ntab = 0;
    connected = false;
    active = false;
    my_type = TYPE;

tools/install.sh

@@ -54,7 +54,7 @@ trap rm_tmp EXIT
 # --------------- Install functions -------------------------
 function try {
 	comment=$1
-	log=$(echo $comment | sed 's/ /./g').log
+	log=$(echo $comment | sed 's|[ /]|.|g').log
 	shift
 	if dry
 	then
@@ -98,6 +98,47 @@ function normal_install {
 EOF
 }
 
+function gitdep.cp {
+	echo -n "Copy $1... "
+	if ! test -f "gitdep_repo/$1"
+	then
+		echo "No such file"
+		exit -1;
+	fi
+	if ! test -d "../$2"
+	then
+		echo "Targed directory $2 doesn't exist";
+		exit -1;
+	fi
+	if diff gitdep_repo/$1 ../$2 >/dev/null
+	then
+		echo "Same"
+	else
+		echo "Changed"
+		if dry
+		then
+			echo "cp \"gitdep_repo/$1\" \"../$2\""
+		else
+			cp "gitdep_repo/$1" "../$2"
+		fi
+	fi
+	return 0;
+}
+
+function gitdep {
+	DIR=$1
+	shift
+	REPO=$1
+	shift
+	echo "repo: $REPO dir:$DIR files:$@"
+	try "Clone $REPO" git clone $REPO gitdep_repo
+	for i in "$@"
+	do
+		gitdep.cp "$i" "$DIR"
+	done
+	rm -r gitdep_repo
+	return 0;
+}
 
 # --------------- Main install script -----------------------
 
@@ -174,6 +215,17 @@ submodules)
 	try "Updating \"tests\" submodule" git submodule update --init ../tests
 	try "Loading gitmodules" mv gitmodules ../.gitmodules
 
+	;;
+gitdep)
+	if ! test -f "../.gitdeps"
+	then
+		echo no .gitdeps file
+		exit 0;
+	fi
+	while read line
+	do
+		gitdep $line
+	done <../.gitdeps
 	;;
 python-dev)
     try "Installing python-dev from APT" apt-get install -qq python-dev python-numpy python-sympy