ptools

Sep 20, 2021

44d2dbc · Sep 20, 2021

This branch is 28 commits behind namin/biohacker:master.

Name	Name	Last commit message	Last commit date
parent directory ..
data	data	Added biolog experiments	May 9, 2008
README.md	README.md	how to run	Sep 20, 2021
biolog-experiments.lisp	biolog-experiments.lisp	Updated the ptools data directory to include ecoli-network.lisp and e…	May 6, 2008
biolog-model-comp.txt	biolog-model-comp.txt	Added new experiments that vary over many nutrient conditions and gen…	May 2, 2008
biolog-pm1.txt	biolog-pm1.txt	Added new experiments that vary over many nutrient conditions and gen…	May 2, 2008
biolog-pm2.txt	biolog-pm2.txt	Added new experiments that vary over many nutrient conditions and gen…	May 2, 2008
biolog-pm3.txt	biolog-pm3.txt	Added new experiments that vary over many nutrient conditions and gen…	May 2, 2008
ecoli-experiment.lisp	ecoli-experiment.lisp	Added compound classes and graph pattern/rewriting spec to graph-rewr…	May 5, 2008
essential-on-glycerol-M9.txt	essential-on-glycerol-M9.txt	Added growth/nogrowth experiments for glycerol minimal media based on…	May 2, 2008
exp-comp-assessment-of-cond-essential-genes-in-ecoli.pdf	exp-comp-assessment-of-cond-essential-genes-in-ecoli.pdf	Added growth/nogrowth experiments for glycerol minimal media based on…	May 2, 2008
export-rxns.lisp	export-rxns.lisp	tweaks for the new biocyc format, which uses more frames	Jul 19, 2021
gene-blattner.txt	gene-blattner.txt	Added growth/nogrowth experiments for glycerol minimal media based on…	May 2, 2008
glycerol-M9.lisp	glycerol-M9.lisp	Added growth/nogrowth experiments for glycerol minimal media based on…	May 2, 2008
iAF1260-ecocyc-cpd-mappings.txt	iAF1260-ecocyc-cpd-mappings.txt	dos2unix	Mar 7, 2019
integrating-ht-comp-data-elucidates-networks.pdf	integrating-ht-comp-data-elucidates-networks.pdf	Added new experiments that vary over many nutrient conditions and gen…	May 2, 2008
nonessential-on-glycerol-M9.txt	nonessential-on-glycerol-M9.txt	Added growth/nogrowth experiments for glycerol minimal media based on…	May 2, 2008
parse-biolog.py	parse-biolog.py	labelled each lisp file, fixed results section	May 15, 2008
parse-glycerol-M9.py	parse-glycerol-M9.py	Added growth/nogrowth experiments for glycerol minimal media based on…	May 2, 2008
pwys.lisp	pwys.lisp	Added pathway generation functions and pathway export list	May 1, 2008
rxns.lisp	rxns.lisp	Changed reactions from :small-molecule to :smm	May 3, 2008
transport-rxns.lisp	transport-rxns.lisp	Transport reactions, and ecoli experiment added	May 1, 2008

README.md

Pathway Tools

~/pathway-tools/pathway-tools -lisp

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Files

ptools

ptools

README.md

Pathway Tools

Files

ptools

Directory actions

More options

Directory actions

More options

Latest commit

History

ptools

Folders and files

parent directory

README.md

Pathway Tools