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Possible mismatch between schaefer atlas and template? #58

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enicolaisen opened this issue Oct 1, 2024 · 1 comment
Open

Possible mismatch between schaefer atlas and template? #58

enicolaisen opened this issue Oct 1, 2024 · 1 comment

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@enicolaisen
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Expected situation

Hi! I noticed that the Schaefer atlas (1000, 17N) does not perfectly overlap with the MNI template that was used when creating the atlas, according to the information of the repository. Has anybody seen this before, and has an explanation or more information about why they do not overlap perfectly? Thanks in advance!

Actual situation

See attached figure:
schaefer in red-yellow (https://github.com/ThomasYeoLab/CBIG/blob/master/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/Parcellations/MNI/Schaefer2018_1000Parcels_17Networks_order_FSLMNI152_1mm.nii.gz)
MNI template in grey (https://github.com/ThomasYeoLab/CBIG/blob/master/data/templates/volume/FSL5.0.8_MNI_templates/MNI152_T1_1mm_brain.nii.gz)

Overlap template schaefer
@enicolaisen
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Author

(here I am trying to tag Kaustubh Patil)
@kaurao

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