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environment.yml
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environment.yml
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name: SEG_DL
channels:
- defaults
- bioconda
- conda-forge
- imperial-college-research-computing
dependencies:
- _libgcc_mutex=0.1=main
- _tflow_select=2.1.0=gpu
- absl-py=0.11.0=pyhd3eb1b0_1
- astor=0.8.1=py37_0
- backcall=0.2.0=pyhd3eb1b0_0
- blas=1.0=mkl
- c-ares=1.17.1=h27cfd23_0
- ca-certificates=2021.1.19=h06a4308_0
- certifi=2020.12.5=py37h06a4308_0
- cudatoolkit=10.0.130=0
- cudnn=7.6.5=cuda10.0_0
- cupti=10.0.130=0
- decorator=4.4.2=pyhd3eb1b0_0
- gast=0.2.2=py37_0
- google-pasta=0.2.0=py_0
- grpcio=1.14.1=py37h9ba97e2_0
- h5py=2.10.0=py37hd6299e0_1
- hdf5=1.10.6=hb1b8bf9_0
- importlib-metadata=2.0.0=py_1
- intel-openmp=2020.2=254
- ipykernel=5.3.4=py37h5ca1d4c_0
- ipython=7.20.0=py37h888b3d9_2
- ipython_genutils=0.2.0=pyhd3eb1b0_1
- jedi=0.18.0=py37h06a4308_1
- jupyter_client=6.1.7=py_0
- jupyter_core=4.7.1=py37h06a4308_0
- keras-applications=1.0.8=py_1
- keras-preprocessing=1.1.0=py_1
- libedit=3.1.20191231=h14c3975_1
- libffi=3.2.1=hf484d3e_1007
- libgcc-ng=9.1.0=hdf63c60_0
- libgfortran-ng=7.3.0=hdf63c60_0
- libprotobuf=3.13.0.1=hd408876_0
- libsodium=1.0.18=h7b6447c_0
- libstdcxx-ng=9.1.0=hdf63c60_0
- markdown=3.3.3=py37h06a4308_0
- mkl=2020.2=256
- mkl-service=2.3.0=py37he8ac12f_0
- mkl_fft=1.2.0=py37h23d657b_0
- mkl_random=1.1.1=py37h0573a6f_0
- ncurses=6.2=he6710b0_1
- numpy-base=1.19.2=py37hfa32c7d_0
- openssl=1.0.2u=h7b6447c_0
- opt_einsum=3.1.0=py_0
- pandas=1.2.1=py37ha9443f7_0
- parso=0.8.1=pyhd3eb1b0_0
- pexpect=4.8.0=pyhd3eb1b0_3
- pickleshare=0.7.5=pyhd3eb1b0_1003
- prompt-toolkit=3.0.8=py_0
- protobuf=3.13.0.1=py37he6710b0_1
- ptyprocess=0.7.0=pyhd3eb1b0_2
- pygments=2.7.4=pyhd3eb1b0_0
- python=3.7.0=h6e4f718_3
- python-dateutil=2.8.1=pyhd3eb1b0_0
- python_abi=3.7=1_cp37m
- pytz=2021.1=pyhd3eb1b0_0
- pyzmq=20.0.0=py37h2531618_1
- readline=7.0=h7b6447c_5
- setuptools=51.3.3=py37h06a4308_4
- six=1.15.0=py37h06a4308_0
- sqlite=3.33.0=h62c20be_0
- tensorboard=1.15.0=pyhb230dea_0
- tensorflow=1.15.0=gpu_py37h0f0df58_0
- tensorflow-base=1.15.0=gpu_py37h9dcbed7_0
- tensorflow-estimator=1.15.1=pyh2649769_0
- tensorflow-gpu=1.15.0=h0d30ee6_0
- termcolor=1.1.0=py37_1
- tk=8.6.10=hbc83047_0
- tornado=6.1=py37h27cfd23_0
- traitlets=5.0.5=pyhd3eb1b0_0
- wcwidth=0.2.5=py_0
- webencodings=0.5.1=py37_1
- werkzeug=0.16.1=py_0
- wheel=0.36.2=pyhd3eb1b0_0
- wrapt=1.12.1=py37h7b6447c_1
- xz=5.2.5=h7b6447c_0
- zeromq=4.3.3=he6710b0_3
- zipp=3.4.0=pyhd3eb1b0_0
- zlib=1.2.11=h7b6447c_3
- pip:
- backoff==1.10.0
- blessings==1.7
- cachetools==4.2.2
- charset-normalizer==2.0.4
- cycler==0.10.0
- efficientnet==1.0.0
- google-api-core==1.31.1
- google-auth==1.34.0
- googleapis-common-protos==1.53.0
- gpustat==0.6.0
- idna==3.2
- image-classifiers==1.0.0
- imageio==2.9.0
- joblib==1.0.1
- keras==2.3.0
- kiwisolver==1.3.1
- labelbox==2.7.0
- matplotlib==3.3.3
- ndjson==0.3.1
- networkx==2.5
- numpy==1.19.5
- nvidia-ml-py3==7.352.0
- packaging==21.0
- pillow==8.1.0
- pip==20.3.4
- psutil==5.8.0
- pyasn1==0.4.8
- pyasn1-modules==0.2.8
- pydantic==1.8.2
- pyparsing==2.4.7
- pywavelets==1.1.1
- requests==2.26.0
- rsa==4.7.2
- scikit-image==0.18.1
- scikit-learn==0.24.1
- scikit-plot==0.3.7
- scipy==1.6.0
- seaborn==0.11.1
- segmentation-models==1.0.1
- setgpu==0.0.7
- threadpoolctl==2.1.0
- tifffile==2021.1.14
- tqdm==4.61.2
- typing-extensions==3.10.0.0
- urllib3==1.26.6
prefix: /rds/general/user/zw120/home/anaconda3/envs/SEG_DL