bump to al-folio upstream tag 0.12.0 (#22)

* Update README.md (#2493)

Added Physics-Morris.github.io to the list of academics.

Co-authored-by: Morris Huang <[email protected]>

* Fixed issue with vega

* Fix code blocks not changing to plots and others (#2497)

For some unknown reason, all the `document.onreadystatechange = () => {`
checks stopped working. Thankfully, replacing them with
`document.addEventListener("readystatechange", () => {` fixed the
issues.

---------

Signed-off-by: George Araujo <[email protected]>

* fix: remove 'index.html' in pagination (#2509)

Currently, on the [blog](https://alshedivat.github.io/al-folio/blog/)
page, clicking "older" and "newer" on the pagination at the bottom
direct you forward to links like `/al-folio/blog/page/2/` and backward
to `/al-folio/blog/`.

However, if you click on the `1`, `2`.. etc buttons, there is a
different behavior. The links now contain an `index.html`. For example,
clicking `2` leads you to `/al-folio/blog/page/2/index.html`. It is the
same content, just with a messier hyper link. Same with clicking `1`,
you are brought to `/al-folio/blog/`.

This fix creates a consistency among the hyper links in pagination.

* Added SRaf.ir to README.md (#2510)

Hi, I would be more than happy if I could add my personal website here.

* Support pirsch.io for analytics (#2513)

* Fixed external post symbol on search (#2515)

Fixes #2471

Signed-off-by: George Araujo <[email protected]>

* fix: blog highlighted in nav for child pages (#2516)

Currently, in all blog posts, or any child page under /blog, the "blog"
in nav is not highlighted.

In all other child pages for a parent in nav, the parent is highlighted.
For example, in a sub page of projects, projects in nav is highlighted.

This fix creates a consistent behavior for nav and highlights the blog
in nav if in a blog post.

BEFORE:
<img width="1427" alt="image"
src="https://github.com/alshedivat/al-folio/assets/52665298/fc79727c-dc22-4af7-8c16-80efa216ecbc">

AFTER:
<img width="1434" alt="image"
src="https://github.com/alshedivat/al-folio/assets/52665298/6b32e7f9-e421-4b08-b86e-813b20ac058e">

* Support superscripts in bibtex author names (#2512)

Implements #2511

* Added support for a newsletter (#2517)

In reference to idea:
alshedivat/al-folio#2097
In reference to request:
alshedivat/al-folio#923 (comment)

Added support to integrate a [loops.so](https://loops.so/) mailing list
into the site.

To use, you need to enable `newsletter` in `_config.yml`. You also must
specify a loops endpoint (although I think any mailing list endpoint can
work), which you can get when you set up a mailing list on loops. More
documentation on loops: [here](https://loops.so/docs/forms/custom-form).

Once that is enabled, the behavior is different depending on how you
specified your footer to behave in `_config.yml`. If `footer_fixed:
true`, then the sign up will appear at the bottom of the about page, as
well as at the bottom of blog posts, if you enable `related_posts`.

If `footer_fixed: false`, then the newsletter signup will be in the
footer (on every page), like it is in on [my
website](https://asboyer.com).

I'm not attached to the placement of the signup, and you can choose to
include it wherever you want with `{% include scripts/newsletter.liquid
%}`. Also if you include positional variables into that, you can choose
how you center the signup. So `{% include scripts/newsletter.liquid
left=true %}` positions the signup bar to the left.

Here are some screenshots below:
## Dark version

![image](https://github.com/alshedivat/al-folio/assets/52665298/af7fdb81-6e5f-47a9-958b-4cb93bba9e8f)

## Light version

![image](https://github.com/alshedivat/al-folio/assets/52665298/927f8bc5-b481-448b-ae5e-6f5b1c613243)
I think the input field color should probably change to maybe be light
for both themes? What do you think? I think the dark background looks
cool, but I don't usually see that done like that on other sites.

## Footer fixed

![image](https://github.com/alshedivat/al-folio/assets/52665298/c52f3dc1-0e45-400e-8b71-eeb00d00cb01)


![image](https://github.com/alshedivat/al-folio/assets/52665298/678a2d45-88ab-4d9a-b8cc-9fc6db26d744)

## Footer not fixed

![image](https://github.com/alshedivat/al-folio/assets/52665298/fd2c0228-2bce-4335-ac3c-5cb20a3307e2)


![image](https://github.com/alshedivat/al-folio/assets/52665298/f594b4f2-67e0-4f2b-a3e8-febd579aaf19)
To clarify, if footer isn't fixed, the email signup will appear on every
page.

---------

Co-authored-by: George <[email protected]>

* Fixed docker-slim.yml issue

* Add example use of annotation and superscripts in bibtex (#2520)

![image](https://github.com/alshedivat/al-folio/assets/33930674/e3018225-df99-4ebf-be18-5811f34fcf4b)

![image](https://github.com/alshedivat/al-folio/assets/33930674/afc6150e-0272-4180-bc5e-4ffbf5079239)

![image](https://github.com/alshedivat/al-folio/assets/33930674/40f88a17-4fba-4423-ab16-62fd37d7c574)

![image](https://github.com/alshedivat/al-folio/assets/33930674/c5cfe480-5df7-4f27-87c7-4883af1471ca)

* Bib changes now trigger build action

* Changes to docker-slim.yml now trigger action

* Changes to deploy-image.yml now trigger action

* Changes to deploy-docker-tag.yml now trigger action

* Update CUSTOMIZE.md for Newsletter support (#2521)

In reference to alshedivat/al-folio#2517 and
alshedivat/al-folio#2517 (comment)

* Fix Altmetric badge not correctly set when Altmetric id is provided (#2522)

To reproduce the bug:

```bibtex
@inproceedings{Vaswani2017AttentionIA,
  title     = {Attention is All you Need},
  author    = {Ashish Vaswani and Noam M. Shazeer and Niki Parmar and Jakob Uszkoreit and Llion Jones and Aidan N. Gomez and Lukasz Kaiser and Illia Polosukhin},
  booktitle = {Neural Information Processing Systems},
  year      = {2017},
  doi       = {10.48550/arXiv.1706.03762},
  altmetric = {21021191}
}
```

The bug is
1. It seems to be some weird property of the liquid template that [line
252-254](https://github.com/alshedivat/al-folio/blob/8d82670ff170f98e7d7ea5434428234a8216d460/_layouts/bib.liquid#L252-L254)
doesn't work at all. According to [this
post](https://stackoverflow.com/questions/59887447/liquid-how-to-assign-the-output-of-an-operator-to-a-variable)
and [this issue](Shopify/liquid#236), liquid
doesn't support assign the output of operator to a variable nor a
ternary operator. So based on my console log, the value of
`entry_has_altmetric_badge` is always a string value of
`entry.altmetric` when altmetric is provided in bibtex.
```liquid
{% assign entry_has_altmetric_badge = entry.altmetric or entry.doi or  entry.eprint or entry.pmid or entry.isbn %}
{% assign entry_has_dimensions_badge = entry.dimensions or entry.doi or entry.pmid %}
{% assign entry_has_google_scholar_badge = entry.google_scholar_id %}
{% if entry_has_altmetric_badge or entry_has_dimensions_badge or entry_has_google_scholar_badge %}
  <div class="badges">
  {% if site.enable_publication_badges.altmetric and entry_has_altmetric_badge %}
    <span
...
```
Note that this could be problematic that a string in liquid is always
evaluated as true as long as it is defined regardless if it is "" or
"false".
[reference](https://shopify.github.io/liquid/basics/truthy-and-falsy/)
2. when altmetric is defined in bibtex, now the order of set attribute
to badge is eprint > doi > altmetric id > pmid > ISBN, and the badge
doesn't work when an arxiv doi is provided.

I think the expected behavior should be
1. as documented in CUSTOMIZE.md, only render the badge when the entry
is set to either "true" or the altmetric id. (It could also implement to
always render the badge whenever doi or other related attribute is set,
and set altmetric to "false" to disable it)
```md
- `altmetric`: Adds an [Altmetric](https://www.altmetric.com/) badge (Note: if DOI is provided just use `true`, otherwise only add the altmetric identifier here - the link is generated automatically)
```
2. if the almetric id is set, use it first.

* Fix repo card heigth for different repo descriptions (#2525)

Hello! I had this minor issue on my website and I saw few other people
using this template and having the same issue.

**Brief**
if two repo's in the same row has different number of lines for the
descriptions, heights of the cards will not be the same if we don't
force the number of lines to be displayed.

**Solution**
By looking at [This
issue](anuraghazra/github-readme-stats#2900) I
could see that they solved it by adding an new option,
`description_lines_count`. This was used on the API request in order to
fix the issue.

---

## Issue reproduced:


![before](https://github.com/alshedivat/al-folio/assets/15076325/238931f5-8a0e-45c5-a9bb-e9c6e4c0f04b)

---

## Issue fixed after the commit:


![after](https://github.com/alshedivat/al-folio/assets/15076325/a0e79cdf-fd6a-4765-b21f-279540ae88fe)

* Update README.md

* Add linux x86-64 to Gemfile.lock (#2549)

Fixes #2544 

Generated via:
```
bundle lock --add-platform x86_64-linux
```

---------

Signed-off-by: George Araujo <[email protected]>
Co-authored-by: Morris Huang <[email protected]>
Co-authored-by: Morris Huang <[email protected]>
Co-authored-by: George <[email protected]>
Co-authored-by: Andrew Boyer <[email protected]>
Co-authored-by: saeedrafieyan <[email protected]>
Co-authored-by: ariseus <[email protected]>
Co-authored-by: Tiago Lobão <[email protected]>
Co-authored-by: Maruan <[email protected]>
Co-authored-by: Amir Pourmand <[email protected]>

Author: 10 people

.github/workflows/deploy-docker-tag.yml

@@ -5,6 +5,8 @@ on:
     tags:
       - "v*"
     paths:
+      - ".github/workflows/deploy-docker-tag.yml"
+      - ".github/workflows/deploy-image.yml"
       - "bin/entry_point.sh"
       - "Dockerfile"
       - "Gemfile"

.github/workflows/deploy-image.yml

@@ -6,6 +6,7 @@ on:
       - master
       - main
     paths:
+      - ".github/workflows/deploy-image.yml"
       - "bin/entry_point.sh"
       - "Dockerfile"
       - "Gemfile"

.github/workflows/deploy.yml

@@ -7,6 +7,7 @@ on:
       - main
     paths:
       - "assets/**"
+      - "**.bib"
       - "**.html"
       - "**.js"
       - "**.liquid"
@@ -33,6 +34,7 @@ on:
       - main
     paths:
       - "assets/**"
+      - "**.bib"
       - "**.html"
       - "**.js"
       - "**.liquid"

.github/workflows/docker-slim.yml

@@ -2,6 +2,12 @@ name: Docker Slim
 
 #Only trigger, when the build workflow succeeded
 on:
+  push:
+    branches:
+      - master
+      - main
+    paths:
+      - ".github/workflows/docker-slim.yml"
   workflow_run:
     workflows: ["Docker Image CI"]
     types:
@@ -15,7 +21,7 @@ on:
 jobs:
   build:
     # https://docs.github.com/en/actions/using-workflows/events-that-trigger-workflows#running-a-workflow-based-on-the-conclusion-of-another-workflow
-    if: ${{ github.event.workflow_run.conclusion == 'success' and github.repository_owner == 'alshedivat' }}
+    if: ${{ github.event.workflow_run.conclusion == 'success' && github.repository_owner == 'alshedivat' }}
     runs-on: ubuntu-latest
     defaults:
       run:

CUSTOMIZE.md

@@ -80,7 +80,7 @@ You can easily create your own collections, apps, short stories, courses, or wha
 
 To add publications create a new entry in the [\_bibliography/papers.bib](_bibliography/papers.bib) file. You can find the BibTeX entry of a publication in Google Scholar by clicking on the quotation marks below the publication title, then clicking on "BibTeX", or also in the conference page itself. By default, the publications will be sorted by year and the most recent will be displayed first. You can change this behavior and more in the `Jekyll Scholar` section in [\_config.yml](_config.yml) file.
 
-You can add extra information to a publication, like a PDF file in the `assets/pdfs/` directory and add the path to the PDF file in the BibTeX entry with the `pdf` field. Some of the supported fields are: `abstract`, `altmetric`, `arxiv`, `bibtex_show`, `blog`, `code`, `dimensions`, `doi`, `eprint`, `html`, `isbn`, `pdf`, `pmid`, `poster`, `slides`, `supp`, `video`, and `website`.
+You can add extra information to a publication, like a PDF file in the `assets/pdfs/` directory and add the path to the PDF file in the BibTeX entry with the `pdf` field. Some of the supported fields are: `abstract`, `altmetric`, `annotation`, `arxiv`, `bibtex_show`, `blog`, `code`, `dimensions`, `doi`, `eprint`, `html`, `isbn`, `pdf`, `pmid`, `poster`, `slides`, `supp`, `video`, and `website`.
 
 ### Author annotation
 
@@ -124,6 +124,7 @@ There are several custom bibtex keywords that you can use to affect how the entr
 - `abbr`: Adds an abbreviation to the left of the entry. You can add links to these by creating a venue.yaml-file in the \_data folder and adding entries that match.
 - `abstract`: Adds an "Abs" button that expands a hidden text field when clicked to show the abstract text
 - `altmetric`: Adds an [Altmetric](https://www.altmetric.com/) badge (Note: if DOI is provided just use `true`, otherwise only add the altmetric identifier here - the link is generated automatically)
+- `annotation`: Adds a popover info message to the end of the author list that can potentially be used to clarify superscripts. HTML is allowed.
 - `arxiv`: Adds a link to the Arxiv website (Note: only add the arxiv identifier here - the link is generated automatically)
 - `bibtex_show`: Adds a "Bib" button that expands a hidden text field with the full bibliography entry
 - `blog`: Adds a "Blog" button redirecting to the specified link
@@ -145,3 +146,9 @@ A variety of beautiful theme colors have been selected for you to choose from. T
 ## Adding social media information
 
 You can add your social media links by adding the specified information at the `Social integration` section in the [\_config.yml](_config.yml) file. This information will appear at the bottom of the `About` page.
+
+## Adding a newsletter
+
+You can add a newsletter subscription form by adding the specified information at the `newsletter` section in the [\_config.yml](_config.yml) file. To set up a newsletter, you can use a service like [Loops.so](https://loops.so/), which is the current supported solution. Once you have set up your newsletter, you can add the form [endpoint](https://loops.so/docs/forms/custom-form) to the `endpoint` field in the `newsletter` section of the [\_config.yml](_config.yml) file.
+
+Depending on your specified footer behavior, the sign up form either will appear at the bottom of the `About` page and at the bottom of blogposts if `related_posts` are enabled, or in the footer at the bottom of each page.

Gemfile

@@ -11,6 +11,7 @@ group :jekyll_plugins do
     gem 'jekyll-link-attributes'
     gem 'jekyll-minifier'
     gem 'jekyll-paginate-v2'
+    gem 'jekyll-regex-replace'
     gem 'jekyll-scholar'
     gem 'jekyll-sitemap'
     gem 'jekyll-tabs'

Gemfile.lock

@@ -1,7 +1,7 @@
 GEM
   remote: https://rubygems.org/
   specs:
-    activesupport (7.1.3.2)
+    activesupport (7.1.3.4)
       base64
       bigdecimal
       concurrent-ruby (~> 1.0, >= 1.0.2)
@@ -11,8 +11,8 @@ GEM
       minitest (>= 5.1)
       mutex_m
       tzinfo (~> 2.0)
-    addressable (2.8.6)
-      public_suffix (>= 2.0.2, < 6.0)
+    addressable (2.8.7)
+      public_suffix (>= 2.0.2, < 7.0)
     base64 (0.2.0)
     bibtex-ruby (6.1.0)
       latex-decode (~> 0.0)
@@ -50,12 +50,15 @@ GEM
     feedjira (3.2.3)
       loofah (>= 2.3.1, < 3)
       sax-machine (>= 1.0, < 2)
-    ffi (1.17.0-x86_64-linux-gnu)
+    ffi (1.17.0)
+    ffi (1.17.0-arm64-darwin)
+    ffi (1.17.0-x86_64-darwin)
     forwardable-extended (2.6.0)
     gemoji (4.1.0)
-    google-protobuf (4.27.1-x86_64-linux)
-      bigdecimal
-      rake (>= 13)
+    google-protobuf (3.25.3-aarch64-linux)
+    google-protobuf (3.25.3-arm64-darwin)
+    google-protobuf (3.25.3-x86_64-darwin)
+    google-protobuf (3.25.3-x86_64-linux)
     html-pipeline (2.14.3)
       activesupport (>= 2)
       nokogiri (>= 1.4)
@@ -104,6 +107,7 @@ GEM
       uglifier (~> 4.1)
     jekyll-paginate-v2 (3.0.0)
       jekyll (>= 3.0, < 5.0)
+    jekyll-regex-replace (1.1.0)
     jekyll-sass-converter (3.0.0)
       sass-embedded (~> 1.54)
     jekyll-scholar (7.1.3)
@@ -115,7 +119,7 @@ GEM
       jekyll (>= 3.7, < 5.0)
     jekyll-tabs (1.2.1)
       jekyll (>= 3.0, < 5.0)
-    jekyll-toc (0.18.0)
+    jekyll-toc (0.19.0)
       jekyll (>= 3.9)
       nokogiri (~> 1.12)
     jekyll-twitter-plugin (2.1.0)
@@ -133,6 +137,9 @@ GEM
     kramdown-parser-gfm (1.1.0)
       kramdown (~> 2.0)
     latex-decode (0.4.0)
+    libv8-node (21.7.2.0-aarch64-linux)
+    libv8-node (21.7.2.0-arm64-darwin)
+    libv8-node (21.7.2.0-x86_64-darwin)
     libv8-node (21.7.2.0-x86_64-linux)
     liquid (4.0.4)
     listen (3.9.0)
@@ -146,28 +153,40 @@ GEM
     mini_mime (1.1.5)
     mini_racer (0.12.0)
       libv8-node (~> 21.7.2.0)
-    minitest (5.22.3)
-    multi_xml (0.7.1)
-      bigdecimal (~> 3.1)
+    minitest (5.24.1)
+    multi_xml (0.6.0)
     mutex_m (0.2.0)
     namae (1.2.0)
       racc (~> 1.7)
-    nokogiri (1.16.5-x86_64-linux)
+    nokogiri (1.16.6-aarch64-linux)
+      racc (~> 1.4)
+    nokogiri (1.16.6-arm64-darwin)
+      racc (~> 1.4)
+    nokogiri (1.16.6-x86_64-darwin)
+      racc (~> 1.4)
+    nokogiri (1.16.6-x86_64-linux)
       racc (~> 1.4)
     pathutil (0.16.2)
       forwardable-extended (~> 2.6)
-    public_suffix (5.1.1)
-    racc (1.7.3)
+    public_suffix (6.0.0)
+    racc (1.8.0)
     rake (13.2.1)
     rb-fsevent (0.11.2)
     rb-inotify (0.11.1)
       ffi (~> 1.0)
-    rexml (3.2.8)
+    rexml (3.3.1)
+      strscan
     rouge (4.3.0)
     safe_yaml (1.0.5)
-    sass-embedded (1.77.5-x86_64-linux-gnu)
-      google-protobuf (>= 3.25, < 5.0)
+    sass-embedded (1.69.5)
+      google-protobuf (~> 3.23)
+      rake (>= 13.0.0)
+    sass-embedded (1.69.5-arm64-darwin)
+      google-protobuf (~> 3.23)
+    sass-embedded (1.69.5-x86_64-darwin)
+      google-protobuf (~> 3.23)
     sax-machine (1.3.2)
+    strscan (3.1.0)
     terminal-table (3.0.2)
       unicode-display_width (>= 1.1.1, < 3)
     tzinfo (2.0.6)
@@ -179,7 +198,10 @@ GEM
     webrick (1.8.1)
 
 PLATFORMS
-  x86_64-linux-gnu
+  aarch64-linux
+  arm64-darwin
+  x86_64-darwin
+  x86_64-linux
 
 DEPENDENCIES
   classifier-reborn
@@ -196,6 +218,7 @@ DEPENDENCIES
   jekyll-link-attributes
   jekyll-minifier
   jekyll-paginate-v2
+  jekyll-regex-replace
   jekyll-scholar
   jekyll-sitemap
   jekyll-tabs
@@ -207,4 +230,4 @@ DEPENDENCIES
   webrick
 
 BUNDLED WITH
-   2.5.13
+   2.5.7

README.md

@@ -140,6 +140,9 @@ Feel free to add your own page(s) by sending a PR.
 <a href="https://kishanved.tech/" target="_blank">★</a>
 <a href="https://abhilesh.github.io/" target="_blank">★</a>
 <a href="https://jackjburnett.github.io/" target="_blank">★</a>
+<a href="https://physics-morris.github.io/" target="_blank">★</a>
+<a href="https://sraf.ir" target="_blank">★</a>
+<a href="https://acad.garywei.dev/" target="_blank">★</a>
 </td>
 </tr>
 <tr>
@@ -179,7 +182,8 @@ Score Based Methods (NeurIPS: <a href="https://score-based-methods-workshop.gith
 Images2Symbols (CogSci: <a href="https://images2symbols.github.io/" target="_blank"> 2022</a>) <br>
 Medical Robotics Junior Faculty Forum (ISMR: <a href="https://junior-forum-ismr.github.io/" target="_blank"> 2023</a>)<br>
 Beyond Vision: Physics meets AI (ICIAP: <a href="https://physicsmeetsai.github.io/beyond-vision/" target="_blank">2023</a>) <br>
-Workshop on Diffusion Models (NeurIPS: <a href="https://diffusionworkshop.github.io/" target="_blank">2023</a>)
+Workshop on Diffusion Models (NeurIPS: <a href="https://diffusionworkshop.github.io/" target="_blank">2023</a>) <br>
+Workshop on Structured Probabilistic Inference & Generative Modeling (ICML: <a href="https://spigmworkshop.github.io/" target="_blank">2023</a>, <a href="https://spigmworkshop2024.github.io/" target="_blank">2024</a>)
 </td>
 </tr>
 </table>

_config.yml

@@ -120,6 +120,7 @@ contact_note:
 # and follow the instructions for Google Sites. You will need to create a Google Analytics property and copy the Google tag ID.
 google_analytics: # your Google Analytics measurement ID (format: G-XXXXXXXXXX)
 cronitor_analytics: # cronitor RUM analytics site ID (format: XXXXXXXXX)
+pirsch_analytics: # your Pirsch analytics site ID (length 32 characters)
 
 # For Google Search Console, see https://support.google.com/webmasters/answer/9008080?hl=en#meta_tag_verification&zippy=%2Chtml-tag
 google_site_verification: # your google-site-verification ID (Google Search Console)
@@ -172,6 +173,15 @@ external_sources:
   #     - url: https://blog.google/technology/ai/google-gemini-update-flash-ai-assistant-io-2024/
   #       published_date: 2024-05-14
 
+# -----------------------------------------------------------------------------
+# Newsletter
+# -----------------------------------------------------------------------------
+
+newsletter:
+  enabled: false
+  endpoint: # your loops endpoint (e.g., https://app.loops.so/api/newsletter-form/YOUR-ENDPOINT)
+  # https://loops.so/docs/forms/custom-form
+
 # -----------------------------------------------------------------------------
 # Collections
 # -----------------------------------------------------------------------------
@@ -253,6 +263,7 @@ plugins:
   - jekyll-link-attributes
   - jekyll-minifier
   - jekyll-paginate-v2
+  - jekyll-regex-replace
   - jekyll/scholar
   - jekyll-sitemap
   - jekyll-tabs
@@ -339,6 +350,7 @@ filtered_bibtex_keywords:
     abstract,
     additional_info,
     altmetric,
+    annotation,
     arxiv,
     award,
     award_name,
@@ -411,6 +423,7 @@ lazy_loading_images: true # enables lazy loading of images (recommended)
 
 enable_google_analytics: false # enables google analytics
 enable_cronitor_analytics: false # enables cronitor RUM analytics
+enable_pirsch_analytics: false # enables Pirsch analytics (https://pirsch.io/)
 enable_google_verification: false # enables google site verification
 enable_bing_verification: false # enables bing site verification
 enable_masonry: true # enables automatic project cards arrangement

_data/repositories.yml

@@ -2,11 +2,13 @@ github_users:
   - torvalds
   - alshedivat
 
+repo_description_lines_max: 2
+
 github_repos:
   - alshedivat/al-folio
-  - twbs/bootstrap
   - jekyll/jekyll
+  - twbs/bootstrap
   - jquery/jquery
   - FortAwesome/Font-Awesome
-  - jpswalsh/academicons
   - mathjax/MathJax
+  - jpswalsh/academicons

_includes/footer.liquid

@@ -15,6 +15,10 @@
   </footer>
 {% else %}
   <footer class="sticky-bottom mt-5" role="contentinfo">
+    {% if site.newsletter.enabled %}
+      {% include scripts/newsletter.liquid %}
+    {% endif %}
+
     <div class="container">
       &copy; Copyright {{ site.time | date: '%Y' }}
       {{ site.first_name }}

_includes/header.liquid

@@ -96,7 +96,8 @@
                   </div>
                 </li>
               {% else %}
-                <li class="nav-item {% if page.url contains p.permalink %}active{% endif %}">
+                {% assign parent_link = p.permalink | remove: 'index.html' %}
+                <li class="nav-item {% if page.url contains parent_link %}active{% endif %}">
                   {% if p.permalink contains '/blog/' %}{% assign url = '/blog/' %} {% else %}{% assign url = p.url %}{% endif %}
                   <a class="nav-link" href="{{ url | relative_url }}">
                     {{- p.title }}

_includes/pagination.liquid

@@ -9,7 +9,7 @@
       {% if paginator.page_trail %}
         {% for trail in paginator.page_trail %}
           <li class="page-item {% if page.url == trail.path %}active{% endif %}">
-            <a class="page-link" href="{{ trail.path | relative_url }}" title="{{trail.title}}">{{ trail.num }}</a>
+            <a class="page-link" href="{{ trail.path | relative_url | remove: 'index.html' }}" title="{{trail.title}}">{{ trail.num }}</a>
           </li>
         {% endfor %}
       {% endif %}

_includes/related_posts.liquid

@@ -16,3 +16,7 @@
     <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="{{ site.baseurl }}{{ post.url }}">{{ post.title }}</a>
   </li>
 {% endfor %}
+{% if site.newsletter.enabled and site.footer_fixed %}
+  <p class="mb-2" style="margin-top: 1.5rem !important">Subscribe to be notified of future articles:</p>
+  {% include scripts/newsletter.liquid left=true %}
+{% endif %}

_includes/repository/repo.liquid

@@ -5,17 +5,23 @@
   {% assign show_owner = true %}
 {% endif %}
 
+{% if site.data.repositories.repo_description_lines_max %}
+  {% assign max_lines = site.data.repositories.repo_description_lines_max %}
+{% else %}
+  {% assign max_lines = 2 %}
+{% endif %}
+
 <div class="repo p-2 text-center">
   <a href="https://github.com/{{ include.repository }}">
     <img
       class="repo-img-light w-100"
       alt="{{ include.repository }}"
-      src="https://github-readme-stats.vercel.app/api/pin/?username={{ repo_url[0] }}&repo={{ repo_url[1] }}&theme={{ site.repo_theme_light }}&show_owner={{ show_owner }}"
+      src="https://github-readme-stats.vercel.app/api/pin/?username={{ repo_url[0] }}&repo={{ repo_url[1] }}&theme={{ site.repo_theme_light }}&show_owner={{ show_owner }}&description_lines_count={{ max_lines }}"
     >
     <img
       class="repo-img-dark w-100"
       alt="{{ include.repository }}"
-      src="https://github-readme-stats.vercel.app/api/pin/?username={{ repo_url[0] }}&repo={{ repo_url[1] }}&theme={{ site.repo_theme_dark }}&show_owner={{ show_owner }}"
+      src="https://github-readme-stats.vercel.app/api/pin/?username={{ repo_url[0] }}&repo={{ repo_url[1] }}&theme={{ site.repo_theme_dark }}&show_owner={{ show_owner }}&description_lines_count={{ max_lines }}"
     >
   </a>
 </div>

_includes/scripts/analytics.liquid

@@ -22,3 +22,11 @@
     cronitor('config', { clientKey: '{{site.cronitor_analytics}}' });
   </script>
 {% endif %}
+{% if site.enable_pirsch_analytics %}
+  <script
+    defer
+    src="https://api.pirsch.io/pa.js"
+    id="pianjs"
+    data-code="{{ site.pirsch_analytics }}"
+  ></script>
+{% endif %}