yeast 7.8.0

• Added information:
  • metFormulas added for all lipids
  • rxnKEGGID added from old version
  • rxnNotes enriched with Pubmed ids (pmid) from old version
  • rxnConfidenceScores added based on automatic script (available in ComplementaryScripts)
• Format changes:
  • Biomass clustered by 5 main groups: protein, carbohydrate, lipid, RNA and DNA

yeast 7.7.0

• Format changes:
  • FBCv2 compliant
  • Compatible with latest COBRA and RAVEN parsers
  • Created main structure of repository
• Added information:
  • geneNames added to genes based on KEGG data
  • subSystems and rxnECnumbers added to reactions based on KEGG & Swissprot data
  • Boundary metabolites tracked (available in ComplementaryScripts)
• Simulation improvements:
  • Glucan composition fixed in biomass pseudo-rxn
  • Proton balance in membrane restored
  • Ox.Pho. stoichiometry fixed
  • NGAM rxn introduced
  • GAM in biomass pseudo-rxn fixed and refitted to chemostat data

yeast 7.6.0

First release of the yeast model in GitHub, identical to the last model available at https://sourceforge.net/projects/yeast/