packaging: Use pyproject.toml for everything

Author: mdraw

Diff for: .gitignore

@@ -25,6 +25,8 @@ wheels/
 .installed.cfg
 *.egg
 
+**/_version.py
+
 # PyInstaller
 #  Usually these files are written by a python script from a template
 #  before PyInstaller builds the exe, so as to inject date/other infos into it.

Diff for: frozen-requirements.txt

@@ -0,0 +1,23 @@
+git+git://github.com/ELEKTRONN/elektronn3.git@emcaps#egg=elektronn3
+
+albumentations==1.0.3
+hydra-core==1.2.0
+imageio==2.19.3
+ipython==8.4.0
+#magicgui==0.5.1
+#napari==0.4.16
+matplotlib==3.5.2
+numpy==1.22.4
+omegaconf==2.2.1
+pandas==1.4.3
+Pillow==9.1.1
+PyYAML==6.0
+scikit_image==0.19.3
+scikit_learn==1.1.1
+scipy==1.8.1
+seaborn==0.11.2
+setuptools==62.6.0
+skimage==0.19.3
+torch==1.12.0
+tqdm==4.64.0
+typing_extensions==4.2.0

Diff for: pyproject.toml

@@ -1,3 +1,30 @@
 [build-system]
-requires = ["setuptools", "setuptools-scm"]
+requires = ["setuptools>=63", "wheel", "setuptools-scm[toml]>=7"]
 build-backend = "setuptools.build_meta"
+
+[project]
+name = "emcaps"
+description = "Code for the paper Genetically encoded barcodes for correlative volume electron microscopy"
+readme = "README.md"
+requires-python = ">=3.10"
+keywords = ["emcapsulin", "encapsulin"]
+license = {file = "LICENSE"}
+classifiers = [
+    "Programming Language :: Python :: 3",
+    "License :: OSI Approved :: MIT License",
+    "Topic :: Scientific/Engineering :: Image Processing",
+
+]
+dynamic = ["version", "dependencies"]
+
+[project.scripts]
+emcaps-segment = "emcaps.inference.segment:main"
+
+[tool.setuptools]
+packages = ["emcaps"]
+
+[tool.setuptools.dynamic]
+dependencies = {file = ["requirements.txt"]}
+
+[tool.setuptools_scm]
+write_to = "emcaps/_version.py"

Diff for: requirements.txt

@@ -1,23 +1,24 @@
-git+git://github.com/ELEKTRONN/elektronn3.git@master#egg=elektronn3
+# elektronn3 @ git+git://github.com/ELEKTRONN/elektronn3.git@emcaps#egg=elektronn3
+elektronn3 @ https://github.com/ELEKTRONN/elektronn3/archive/refs/heads/emcaps.zip
 
-albumentations==1.0.3
-hydra-core==1.2.0
-imageio==2.19.3
-ipython==8.4.0
-magicgui==0.5.1
-matplotlib==3.5.2
-napari==0.4.16
-numpy==1.22.4
-omegaconf==2.2.1
-pandas==1.4.3
-Pillow==9.1.1
-PyYAML==6.0
-scikit_image==0.19.3
-scikit_learn==1.1.1
-scipy==1.8.1
-seaborn==0.11.2
-setuptools==62.6.0
-skimage==0.19.3
-torch==1.12.0
-tqdm==4.64.0
-typing_extensions==4.2.0
+albumentations>=1.0.3
+hydra-core>=1.2.0
+imageio>=2.19.3
+ipython>=8.4.0
+#magicgui>=0.5.1
+#napari>=0.4.16
+matplotlib>=3.5.2
+numpy>=1.22.4
+omegaconf>=2.2.1
+pandas>=1.4.3
+Pillow>=9.1.1
+PyYAML>=6.0
+scikit_image>=0.19.3
+scikit_learn>=1.1.1
+scipy>=1.8.1
+seaborn>=0.11.2
+setuptools>=62.6.0
+skimage>=0.19.3
+torch>=1.12.0
+tqdm>=4.64.0
+typing_extensions>=4.2.0