diff --git a/method/RESEPT/environment.yml b/method/RESEPT/environment.yml new file mode 100644 index 00000000..403502a2 --- /dev/null +++ b/method/RESEPT/environment.yml @@ -0,0 +1,41 @@ +name: RESEPT +channels: + - conda-forge + - pytorch + - defaults +dependencies: + # Python 3.6+ recommended in RESEPT docs + - python=3.8.* + - pip=23.* + - pytorch==1.5.1 + - torchvision==0.6.1 + - pip: + - anndata==0.7.6 + - cityscapesscripts==2.2.0 + - leidenalg==0.8.7 + - matplotlib==3.3.4 + # to make use of GPUs, "cpu" in the URL below should be replaced with one of + # "cu92", "cu101" or "cu102", depending on the CUDA version + - mmcv-full==1.3.0 -f https://download.openmmlab.com/mmcv/dist/cpu/torch1.5.0/index.html + - munkres==1.1.4 + - networkx==2.5.1 + - numba==0.53.1 + - numpy==1.19.2 + - opencv_contrib_python==4.5.1.48 + - pandas==1.2.3 + - pillow==8.3.1 + - progress==1.6 + - python_igraph==0.9.6 + - requests==2.25.1 + - rpy2==3.1.0 + - scanpy==1.7.2 + - scikit_image==0.18.1 + - scikit-learn==0.24.2 + - scipy==1.6.2 + - seaborn==0.11.1 + - six==1.15.0 + - statsmodels==0.12.2 + - terminaltables==3.1.0 + - tqdm==4.60.0 + - umap==0.1.1 + - umap_learn==0.5.1