From 7357dea0deed49ee517defdf08dbc1a9e819ad93 Mon Sep 17 00:00:00 2001 From: Niyazi Acer Date: Tue, 2 Dec 2025 18:29:19 +0300 Subject: [PATCH 1/9] ENH: Add SlicerVolBrain extension --- SlicerVolBrain.s4ext | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) create mode 100644 SlicerVolBrain.s4ext diff --git a/SlicerVolBrain.s4ext b/SlicerVolBrain.s4ext new file mode 100644 index 000000000..5426fc4ef --- /dev/null +++ b/SlicerVolBrain.s4ext @@ -0,0 +1,21 @@ +scm git +scmurl https://github.com/niyaziacer/SlicerVolBrain.git +scmrevision main + +depends NA + +build_subdirectory . + +homepage https://github.com/niyaziacer/SlicerVolBrain + +contributors Nimet Iyazi Acer (Gaziantep University) + +category Quantification + +status stable + +description 3D Slicer extension for comprehensive brain structure volume calculation and 3D visualization from volBrain segmentation outputs. Supports 108+ cortical regions, tissue classification, lobes, and macrostructures. + +screenshoturls https://raw.githubusercontent.com/niyaziacer/SlicerVolBrain/main/Screenshots/interface.png https://raw.githubusercontent.com/niyaziacer/SlicerVolBrain/main/Screenshots/3d_visualization.png + +enabled 1 \ No newline at end of file From b2dbe2cc77728b959d7ffebe0ea086c982d4a4b9 Mon Sep 17 00:00:00 2001 From: niyazi acer <36598997+niyaziacer@users.noreply.github.com> Date: Tue, 2 Dec 2025 21:04:54 +0300 Subject: [PATCH 2/9] Create SlicerVolBrain.s4ext --- SlicerVolBrain.s4ext | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) create mode 100644 SlicerVolBrain.s4ext diff --git a/SlicerVolBrain.s4ext b/SlicerVolBrain.s4ext new file mode 100644 index 000000000..4b22f6efd --- /dev/null +++ b/SlicerVolBrain.s4ext @@ -0,0 +1,21 @@ +scm git +scmurl https://github.com/niyaziacer/SlicerVolBrain.git +scmrevision main + +depends NA + +build_subdirectory . + +homepage https://github.com/niyaziacer/SlicerVolBrain + +contributors Nimet Iyazi Acer (Gaziantep University) + +category Quantification + +status stable + +description 3D Slicer extension for comprehensive brain structure volume calculation and 3D visualization from volBrain segmentation outputs. Supports 108+ cortical regions, tissue classification, lobes, and macrostructures. + +screenshoturls https://raw.githubusercontent.com/niyaziacer/SlicerVolBrain/main/Screenshots/interface.png https://raw.githubusercontent.com/niyaziacer/SlicerVolBrain/main/Screenshots/3d_visualization.png + +enabled 1 From 9273a01719bb4ee08d9c79c49e695e7ac80e19b2 Mon Sep 17 00:00:00 2001 From: Niyazi Acer Date: Tue, 2 Dec 2025 22:51:55 +0300 Subject: [PATCH 3/9] Move SlicerVolBrain.s4ext to correct folder for validation --- SlicerVolBrain/SlicerVolBrain.s4ext | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) create mode 100644 SlicerVolBrain/SlicerVolBrain.s4ext diff --git a/SlicerVolBrain/SlicerVolBrain.s4ext b/SlicerVolBrain/SlicerVolBrain.s4ext new file mode 100644 index 000000000..5426fc4ef --- /dev/null +++ b/SlicerVolBrain/SlicerVolBrain.s4ext @@ -0,0 +1,21 @@ +scm git +scmurl https://github.com/niyaziacer/SlicerVolBrain.git +scmrevision main + +depends NA + +build_subdirectory . + +homepage https://github.com/niyaziacer/SlicerVolBrain + +contributors Nimet Iyazi Acer (Gaziantep University) + +category Quantification + +status stable + +description 3D Slicer extension for comprehensive brain structure volume calculation and 3D visualization from volBrain segmentation outputs. Supports 108+ cortical regions, tissue classification, lobes, and macrostructures. + +screenshoturls https://raw.githubusercontent.com/niyaziacer/SlicerVolBrain/main/Screenshots/interface.png https://raw.githubusercontent.com/niyaziacer/SlicerVolBrain/main/Screenshots/3d_visualization.png + +enabled 1 \ No newline at end of file From f7075992b165d3f59be67354cbe99bf23dacdb5f Mon Sep 17 00:00:00 2001 From: Niyazi Acer Date: Tue, 2 Dec 2025 23:16:46 +0300 Subject: [PATCH 4/9] Remove duplicate 'enabled 1' line --- SlicerVolBrain.s4ext | 5 +---- 1 file changed, 1 insertion(+), 4 deletions(-) diff --git a/SlicerVolBrain.s4ext b/SlicerVolBrain.s4ext index c94a79eb0..50344640c 100644 --- a/SlicerVolBrain.s4ext +++ b/SlicerVolBrain.s4ext @@ -18,8 +18,5 @@ description 3D Slicer extension for comprehensive brain structure volume calcula screenshoturls https://raw.githubusercontent.com/niyaziacer/SlicerVolBrain/main/Screenshots/interface.png https://raw.githubusercontent.com/niyaziacer/SlicerVolBrain/main/Screenshots/3d_visualization.png -<<<<<<< HEAD enabled 1 -======= -enabled 1 ->>>>>>> b2dbe2cc77728b959d7ffebe0ea086c982d4a4b9 + From 80d1b6c7604dcb53dd45a8f817d216af6ef5970b Mon Sep 17 00:00:00 2001 From: Niyazi Acer Date: Thu, 4 Dec 2025 07:55:03 +0300 Subject: [PATCH 5/9] ENH: Add SlicerVolBrain extension --- SlicerVolBrain.s4ext | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/SlicerVolBrain.s4ext b/SlicerVolBrain.s4ext index 50344640c..26b5c5920 100644 --- a/SlicerVolBrain.s4ext +++ b/SlicerVolBrain.s4ext @@ -1,3 +1,4 @@ + scm git scmurl https://github.com/niyaziacer/SlicerVolBrain.git scmrevision main @@ -19,4 +20,3 @@ description 3D Slicer extension for comprehensive brain structure volume calcula screenshoturls https://raw.githubusercontent.com/niyaziacer/SlicerVolBrain/main/Screenshots/interface.png https://raw.githubusercontent.com/niyaziacer/SlicerVolBrain/main/Screenshots/3d_visualization.png enabled 1 - From 0e5560a13a5c44796a5b1d2e73f78292006aee50 Mon Sep 17 00:00:00 2001 From: Niyazi Acer Date: Thu, 4 Dec 2025 18:02:16 +0300 Subject: [PATCH 6/9] Fix: Add newline at end of file --- SlicerVolBrain.s4ext | 2 ++ 1 file changed, 2 insertions(+) diff --git a/SlicerVolBrain.s4ext b/SlicerVolBrain.s4ext index 26b5c5920..f2f9e0490 100644 --- a/SlicerVolBrain.s4ext +++ b/SlicerVolBrain.s4ext @@ -20,3 +20,5 @@ description 3D Slicer extension for comprehensive brain structure volume calcula screenshoturls https://raw.githubusercontent.com/niyaziacer/SlicerVolBrain/main/Screenshots/interface.png https://raw.githubusercontent.com/niyaziacer/SlicerVolBrain/main/Screenshots/3d_visualization.png enabled 1 + + From 3a0e76bcd9ffd3cbae37aa9db4915cce2974303b Mon Sep 17 00:00:00 2001 From: Niyazi Acer Date: Fri, 5 Dec 2025 08:04:18 +0300 Subject: [PATCH 7/9] Remove SlicerVolBrain directory - only root .s4ext file should exist --- SlicerVolBrain/SlicerVolBrain.s4ext | 21 --------------------- 1 file changed, 21 deletions(-) delete mode 100644 SlicerVolBrain/SlicerVolBrain.s4ext diff --git a/SlicerVolBrain/SlicerVolBrain.s4ext b/SlicerVolBrain/SlicerVolBrain.s4ext deleted file mode 100644 index 5426fc4ef..000000000 --- a/SlicerVolBrain/SlicerVolBrain.s4ext +++ /dev/null @@ -1,21 +0,0 @@ -scm git -scmurl https://github.com/niyaziacer/SlicerVolBrain.git -scmrevision main - -depends NA - -build_subdirectory . - -homepage https://github.com/niyaziacer/SlicerVolBrain - -contributors Nimet Iyazi Acer (Gaziantep University) - -category Quantification - -status stable - -description 3D Slicer extension for comprehensive brain structure volume calculation and 3D visualization from volBrain segmentation outputs. Supports 108+ cortical regions, tissue classification, lobes, and macrostructures. - -screenshoturls https://raw.githubusercontent.com/niyaziacer/SlicerVolBrain/main/Screenshots/interface.png https://raw.githubusercontent.com/niyaziacer/SlicerVolBrain/main/Screenshots/3d_visualization.png - -enabled 1 \ No newline at end of file From bc5e01508ad495afb5cbd468900f56ea31b0b3ab Mon Sep 17 00:00:00 2001 From: Niyazi Acer Date: Mon, 8 Dec 2025 17:48:00 +0300 Subject: [PATCH 8/9] Fix: Remove extra blank lines at end of file --- SlicerVolBrain.s4ext | 1 - 1 file changed, 1 deletion(-) diff --git a/SlicerVolBrain.s4ext b/SlicerVolBrain.s4ext index f2f9e0490..69a03078b 100644 --- a/SlicerVolBrain.s4ext +++ b/SlicerVolBrain.s4ext @@ -21,4 +21,3 @@ screenshoturls https://raw.githubusercontent.com/niyaziacer/SlicerVolBrain/main/ enabled 1 - From ace84531b9aba8acb3bab15190f6ba84ebf3b5df Mon Sep 17 00:00:00 2001 From: Niyazi Acer Date: Mon, 8 Dec 2025 22:03:30 +0300 Subject: [PATCH 9/9] Convert to JSON format to match repository standard --- SlicerVolBrain.json | 17 +++++++++++++++++ SlicerVolBrain.s4ext | 23 ----------------------- 2 files changed, 17 insertions(+), 23 deletions(-) create mode 100644 SlicerVolBrain.json delete mode 100644 SlicerVolBrain.s4ext diff --git a/SlicerVolBrain.json b/SlicerVolBrain.json new file mode 100644 index 000000000..3ad847f66 --- /dev/null +++ b/SlicerVolBrain.json @@ -0,0 +1,17 @@ +{ + "scm": "git", + "scmurl": "https://github.com/niyaziacer/SlicerVolBrain.git", + "scmrevision": "main", + "depends": [], + "build_subdirectory": ".", + "homepage": "https://github.com/niyaziacer/SlicerVolBrain", + "contributors": ["Nimet Iyazi Acer (Gaziantep University)"], + "category": "Quantification", + "status": "stable", + "description": "3D Slicer extension for comprehensive brain structure volume calculation and 3D visualization from volBrain segmentation outputs. Supports 108+ cortical regions, tissue classification, lobes, and macrostructures.", + "screenshoturls": [ + "https://raw.githubusercontent.com/niyaziacer/SlicerVolBrain/main/Screenshots/interface.png", + "https://raw.githubusercontent.com/niyaziacer/SlicerVolBrain/main/Screenshots/3d_visualization.png" + ], + "enabled": true +} \ No newline at end of file diff --git a/SlicerVolBrain.s4ext b/SlicerVolBrain.s4ext deleted file mode 100644 index 69a03078b..000000000 --- a/SlicerVolBrain.s4ext +++ /dev/null @@ -1,23 +0,0 @@ - -scm git -scmurl https://github.com/niyaziacer/SlicerVolBrain.git -scmrevision main - -depends NA - -build_subdirectory . - -homepage https://github.com/niyaziacer/SlicerVolBrain - -contributors Nimet Iyazi Acer (Gaziantep University) - -category Quantification - -status stable - -description 3D Slicer extension for comprehensive brain structure volume calculation and 3D visualization from volBrain segmentation outputs. Supports 108+ cortical regions, tissue classification, lobes, and macrostructures. - -screenshoturls https://raw.githubusercontent.com/niyaziacer/SlicerVolBrain/main/Screenshots/interface.png https://raw.githubusercontent.com/niyaziacer/SlicerVolBrain/main/Screenshots/3d_visualization.png - -enabled 1 -