From e46d1828c4bb971a3a5d123e457fb0f881aba388 Mon Sep 17 00:00:00 2001
From: kiesers <silas.kieser@gmail.com>
Date: Wed, 21 Nov 2018 16:42:52 +0100
Subject: [PATCH 1/3] add genome-properties

---
 recipes/genome-properties/build.sh  | 22 +++++++++++++++
 recipes/genome-properties/meta.yaml | 42 +++++++++++++++++++++++++++++
 2 files changed, 64 insertions(+)
 create mode 100644 recipes/genome-properties/build.sh
 create mode 100644 recipes/genome-properties/meta.yaml

diff --git a/recipes/genome-properties/build.sh b/recipes/genome-properties/build.sh
new file mode 100644
index 0000000000000..0df7a97b7334d
--- /dev/null
+++ b/recipes/genome-properties/build.sh
@@ -0,0 +1,22 @@
+#!/bin/bash
+
+set -e -o pipefail
+
+cpanm DDP
+cpanm LWP::UserAgent
+
+
+
+outdir=$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM
+mkdir -p $outdir
+mkdir -p $PREFIX/bin
+
+cp -r flatfiles $outdir
+cp -r code $outdir
+
+
+# make assign_genome_properties.pl available
+ln -s $outdir/code/scripts/assign_genome_properties.pl $PREFIX/bin
+
+mkdir -p ${PREFIX}/etc/conda/activate.d/
+echo "export export PERL5LIB=$PERL5LIB:$outdir/code/modules" > ${PREFIX}/etc/conda/activate.d/${PKG_NAME}-${PKG_VERSION}.sh
diff --git a/recipes/genome-properties/meta.yaml b/recipes/genome-properties/meta.yaml
new file mode 100644
index 0000000000000..f8723eb643354
--- /dev/null
+++ b/recipes/genome-properties/meta.yaml
@@ -0,0 +1,42 @@
+{% set version = "2.0.1" %}
+
+package:
+  name: genome-properties
+  version: {{ version }}
+
+source:
+  url: https://github.com/SilasK/genome-properties/archive/v{{ version }}.tar.gz
+  sha256: 628428e7ed2b74c16703fcf8e825e84d4cbcbadf4dc61dac6c64e89f35694ecc
+build:
+  number: 1
+
+requirements:
+  run:
+    - perl=5.22.0.1
+    - perl-app-cpanminus=1.7043
+    - perl-clone=0.38
+    - perl-json=2.90
+    - perl-try-tiny=0.24
+
+test:
+  imports:
+    - GenomeProperties;
+    - GenomeProperties::Definition
+    - GenomeProperties::Step
+    - GenomeProperties::StepEvidence
+  commands:
+    - assign_genome_properties.pl -h
+
+about:
+  home: https://www.ebi.ac.uk/interpro/genomeproperties/
+  license: GPLv3
+  license_family: GPL
+  summary: |
+    Genome properties is an annotation system whereby functional attributes can be assigned to a genome, based on the presence of a defined set of protein signatures within that genome. Properties (which often describe pathways) are composed of steps, with each step defining a protein required for the function of the pathway/property. Genome properties use protein signatures as evidence to determine the presence of each step within a property.
+  dev_url: https://github.com/ebi-pf-team/genome-properties
+  doc_url: https://genome-properties.readthedocs.io/en/latest/index.html
+extra:
+  recipe-maintainers:
+    - kiesers
+  identifiers:
+    - doi:10.1093/nar/gky1013

From 46c507a33877bb6b4f7625dd5ac2457680f51291 Mon Sep 17 00:00:00 2001
From: kiesers <silas.kieser@gmail.com>
Date: Wed, 21 Nov 2018 16:51:48 +0100
Subject: [PATCH 2/3] added packages to host

---
 recipes/genome-properties/meta.yaml | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/recipes/genome-properties/meta.yaml b/recipes/genome-properties/meta.yaml
index f8723eb643354..57afafaca3e02 100644
--- a/recipes/genome-properties/meta.yaml
+++ b/recipes/genome-properties/meta.yaml
@@ -11,6 +11,12 @@ build:
   number: 1
 
 requirements:
+  host:
+    - perl=5.22.0.1
+    - perl-app-cpanminus=1.7043
+    - perl-clone=0.38
+    - perl-json=2.90
+    - perl-try-tiny=0.24
   run:
     - perl=5.22.0.1
     - perl-app-cpanminus=1.7043

From 09addf18ad25f0c8a382fcbbb1911d38786c4991 Mon Sep 17 00:00:00 2001
From: kiesers <silas.kieser@gmail.com>
Date: Wed, 21 Nov 2018 17:00:55 +0100
Subject: [PATCH 3/3] removed import test

---
 recipes/genome-properties/meta.yaml | 5 -----
 1 file changed, 5 deletions(-)

diff --git a/recipes/genome-properties/meta.yaml b/recipes/genome-properties/meta.yaml
index 57afafaca3e02..d0aec60f57bda 100644
--- a/recipes/genome-properties/meta.yaml
+++ b/recipes/genome-properties/meta.yaml
@@ -25,11 +25,6 @@ requirements:
     - perl-try-tiny=0.24
 
 test:
-  imports:
-    - GenomeProperties;
-    - GenomeProperties::Definition
-    - GenomeProperties::Step
-    - GenomeProperties::StepEvidence
   commands:
     - assign_genome_properties.pl -h