From 4cbe3e1ceb642e589b1bc08ad40210b437bc5758 Mon Sep 17 00:00:00 2001 From: Hadley Wickham Date: Tue, 5 Nov 2024 16:02:27 -0600 Subject: [PATCH] Check revdeps --- revdep/README.md | 8 + .../crumble.tar.gz | Bin 0 -> 14137 bytes .../crumble/DESCRIPTION | 46 ++ .../new/crumble.Rcheck/crumble-Ex.Rout | 101 +++++ .../new/crumble.Rcheck/tests/testthat.Rout | 34 ++ .../old/crumble.Rcheck/crumble-Ex.Rout | 101 +++++ .../old/crumble.Rcheck/tests/testthat.Rout | 34 ++ .../fr.tar.gz | Bin 0 -> 14205 bytes .../fr/DESCRIPTION | 25 ++ .../fr/new/fr.Rcheck/fr-Ex.Rout | 41 ++ .../fr/new/fr.Rcheck/tests/testthat.Rout.fail | 280 ++++++++++++ .../fr/old/fr.Rcheck/fr-Ex.Rout | 417 ++++++++++++++++++ .../fr/old/fr.Rcheck/tests/testthat.Rout | 44 ++ .../monad.tar.gz | Bin 0 -> 7567 bytes .../monad/DESCRIPTION | 27 ++ .../monad/new/monad.Rcheck/monad-Ex.Rout | 195 ++++++++ .../new/monad.Rcheck/tests/testthat.Rout | 34 ++ .../monad/old/monad.Rcheck/monad-Ex.Rout | 195 ++++++++ .../old/monad.Rcheck/tests/testthat.Rout | 34 ++ .../waldo.tar.gz | Bin 0 -> 6550 bytes .../waldo/DESCRIPTION | 28 ++ .../new/waldo.Rcheck/tests/testthat.Rout | 62 +++ .../waldo/new/waldo.Rcheck/waldo-Ex.Rout | 104 +++++ .../old/waldo.Rcheck/tests/testthat.Rout | 62 +++ .../waldo/old/waldo.Rcheck/waldo-Ex.Rout | 104 +++++ revdep/cran.md | 18 + revdep/failures.md | 1 + revdep/problems.md | 121 +++++ 28 files changed, 2116 insertions(+) create mode 100644 revdep/README.md create mode 100644 revdep/cloud.noindex/b283e3a4-953b-4875-b3dc-ee76fe345f59/crumble.tar.gz create mode 100644 revdep/cloud.noindex/b283e3a4-953b-4875-b3dc-ee76fe345f59/crumble/DESCRIPTION create mode 100644 revdep/cloud.noindex/b283e3a4-953b-4875-b3dc-ee76fe345f59/crumble/new/crumble.Rcheck/crumble-Ex.Rout create mode 100644 revdep/cloud.noindex/b283e3a4-953b-4875-b3dc-ee76fe345f59/crumble/new/crumble.Rcheck/tests/testthat.Rout create mode 100644 revdep/cloud.noindex/b283e3a4-953b-4875-b3dc-ee76fe345f59/crumble/old/crumble.Rcheck/crumble-Ex.Rout create mode 100644 revdep/cloud.noindex/b283e3a4-953b-4875-b3dc-ee76fe345f59/crumble/old/crumble.Rcheck/tests/testthat.Rout create mode 100644 revdep/cloud.noindex/b283e3a4-953b-4875-b3dc-ee76fe345f59/fr.tar.gz create mode 100644 revdep/cloud.noindex/b283e3a4-953b-4875-b3dc-ee76fe345f59/fr/DESCRIPTION create mode 100644 revdep/cloud.noindex/b283e3a4-953b-4875-b3dc-ee76fe345f59/fr/new/fr.Rcheck/fr-Ex.Rout create mode 100644 revdep/cloud.noindex/b283e3a4-953b-4875-b3dc-ee76fe345f59/fr/new/fr.Rcheck/tests/testthat.Rout.fail create mode 100644 revdep/cloud.noindex/b283e3a4-953b-4875-b3dc-ee76fe345f59/fr/old/fr.Rcheck/fr-Ex.Rout create mode 100644 revdep/cloud.noindex/b283e3a4-953b-4875-b3dc-ee76fe345f59/fr/old/fr.Rcheck/tests/testthat.Rout create mode 100644 revdep/cloud.noindex/b283e3a4-953b-4875-b3dc-ee76fe345f59/monad.tar.gz create mode 100644 revdep/cloud.noindex/b283e3a4-953b-4875-b3dc-ee76fe345f59/monad/DESCRIPTION create mode 100644 revdep/cloud.noindex/b283e3a4-953b-4875-b3dc-ee76fe345f59/monad/new/monad.Rcheck/monad-Ex.Rout create mode 100644 revdep/cloud.noindex/b283e3a4-953b-4875-b3dc-ee76fe345f59/monad/new/monad.Rcheck/tests/testthat.Rout create mode 100644 revdep/cloud.noindex/b283e3a4-953b-4875-b3dc-ee76fe345f59/monad/old/monad.Rcheck/monad-Ex.Rout create mode 100644 revdep/cloud.noindex/b283e3a4-953b-4875-b3dc-ee76fe345f59/monad/old/monad.Rcheck/tests/testthat.Rout create mode 100644 revdep/cloud.noindex/b283e3a4-953b-4875-b3dc-ee76fe345f59/waldo.tar.gz create mode 100644 revdep/cloud.noindex/b283e3a4-953b-4875-b3dc-ee76fe345f59/waldo/DESCRIPTION create mode 100644 revdep/cloud.noindex/b283e3a4-953b-4875-b3dc-ee76fe345f59/waldo/new/waldo.Rcheck/tests/testthat.Rout create mode 100644 revdep/cloud.noindex/b283e3a4-953b-4875-b3dc-ee76fe345f59/waldo/new/waldo.Rcheck/waldo-Ex.Rout create mode 100644 revdep/cloud.noindex/b283e3a4-953b-4875-b3dc-ee76fe345f59/waldo/old/waldo.Rcheck/tests/testthat.Rout create mode 100644 revdep/cloud.noindex/b283e3a4-953b-4875-b3dc-ee76fe345f59/waldo/old/waldo.Rcheck/waldo-Ex.Rout create mode 100644 revdep/cran.md create mode 100644 revdep/failures.md create mode 100644 revdep/problems.md diff --git a/revdep/README.md b/revdep/README.md new file mode 100644 index 00000000..0c50d537 --- /dev/null +++ b/revdep/README.md @@ -0,0 +1,8 @@ +# Revdeps + +## New problems (1) + +|package |version |error |warning |note | +|:-------|:-------|:--------|:-------|:------| +|[fr](problems.md#fr)|0.5.1 |1 __+2__ |__+1__ |__+1__ | + diff --git a/revdep/cloud.noindex/b283e3a4-953b-4875-b3dc-ee76fe345f59/crumble.tar.gz b/revdep/cloud.noindex/b283e3a4-953b-4875-b3dc-ee76fe345f59/crumble.tar.gz new file mode 100644 index 0000000000000000000000000000000000000000..025daa76d1cf2e7d43586e1ea827d6b64e1bb748 GIT binary patch literal 14137 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"Nicholas", + family = "Williams", + role = c("aut", "cre", "cph"), + email = "ntwilliams.personal@gmail.com", + comment = c(ORCID = "0000-0002-1378-4831")), + person(given = "Richard", + family = "Liu", + email = "li.liu@nyulangone.org", + role = c("ctb")), + person(given = "Iván", + family = "Díaz", + email = "ivan.diaz@nyulangone.org", + role = c("aut", "cph"), + comment = c(ORCID = "0000-0001-9056-2047"))) +Maintainer: Nicholas Williams +Description: Implements a modern, unified estimation strategy for common + mediation estimands (natural effects, organic effects, interventional effects, + and recanting twins) in combination with modified treatment policies as + described in Liu, Williams, Rudolph, and Díaz (2024) + . Estimation makes use of recent advancements + in Riesz-learning to estimate a set of required nuisance parameters with + deep learning. The result is the capability to estimate mediation effects with + binary, categorical, continuous, or multivariate exposures with + high-dimensional mediators and mediator-outcome confounders using machine + learning. +License: GPL (>= 3) +Encoding: UTF-8 +Depends: R (>= 4.0.0) +RoxygenNote: 7.3.2 +Imports: checkmate, Matrix, origami, torch, Rsymphony, purrr, cli, S7, + data.table, coro, generics, lmtp, mlr3superlearner, progressr +Suggests: testthat (>= 3.0.0), truncnorm, mma +Config/testthat/edition: 3 +NeedsCompilation: no +Packaged: 2024-09-17 16:37:07 UTC; nicholaswilliams +Author: Nicholas Williams [aut, cre, cph] + (), + Richard Liu [ctb], + Iván Díaz [aut, cph] () +Repository: CRAN +Date/Publication: 2024-09-18 11:50:05 UTC diff --git a/revdep/cloud.noindex/b283e3a4-953b-4875-b3dc-ee76fe345f59/crumble/new/crumble.Rcheck/crumble-Ex.Rout b/revdep/cloud.noindex/b283e3a4-953b-4875-b3dc-ee76fe345f59/crumble/new/crumble.Rcheck/crumble-Ex.Rout new file mode 100644 index 00000000..6ba97ce7 --- /dev/null +++ b/revdep/cloud.noindex/b283e3a4-953b-4875-b3dc-ee76fe345f59/crumble/new/crumble.Rcheck/crumble-Ex.Rout @@ -0,0 +1,101 @@ + +R version 4.3.1 (2023-06-16) -- "Beagle Scouts" +Copyright (C) 2023 The R Foundation for Statistical Computing +Platform: x86_64-pc-linux-gnu (64-bit) + +R is free software and comes with ABSOLUTELY NO WARRANTY. +You are welcome to redistribute it under certain conditions. +Type 'license()' or 'licence()' for distribution details. + +R is a collaborative project with many contributors. +Type 'contributors()' for more information and +'citation()' on how to cite R or R packages in publications. + +Type 'demo()' for some demos, 'help()' for on-line help, or +'help.start()' for an HTML browser interface to help. +Type 'q()' to quit R. + +> pkgname <- "crumble" +> source(file.path(R.home("share"), "R", "examples-header.R")) +> options(warn = 1) +> library('crumble') +> +> base::assign(".oldSearch", base::search(), pos = 'CheckExEnv') +> base::assign(".old_wd", base::getwd(), pos = 'CheckExEnv') +> cleanEx() +> nameEx("crumble") +> ### * crumble +> +> flush(stderr()); flush(stdout()) +> +> ### Name: crumble +> ### Title: Flexible and general mediation analysis +> ### Aliases: crumble +> +> ### ** Examples +> +> +> +> +> cleanEx() +> nameEx("crumble_control") +> ### * crumble_control +> +> flush(stderr()); flush(stdout()) +> +> ### Name: crumble_control +> ### Title: Crumble control parameters +> ### Aliases: crumble_control +> +> ### ** Examples +> +> if (torch::torch_is_installed()) crumble_control(crossfit_folds = 5) +> +> +> +> cleanEx() +> nameEx("sequential_module") +> ### * sequential_module +> +> flush(stderr()); flush(stdout()) +> +> ### Name: sequential_module +> ### Title: Sequential neural network module function factory +> ### Aliases: sequential_module +> +> ### ** Examples +> +> if (torch::torch_is_installed()) sequential_module() +> +> +> +> cleanEx() +> nameEx("tidy.crumble") +> ### * tidy.crumble +> +> flush(stderr()); flush(stdout()) +> +> ### Name: tidy.crumble +> ### Title: Tidy a(n) crumble object +> ### Aliases: tidy.crumble +> +> ### ** Examples +> +> +> +> +> ### *