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.gitignore
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.gitignore
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# C extensions
*.so
*.o
*.a
# text-editor temporary files:
*~
# binary files (but not their directories which have matching names)
minrms
!minrms/
fssp2msf
!fssp2msf/
msf2sequence
!msf2sequence/
msf2stat3d
!msf2stat3d/
msf_compare
!msf_compare/
pdb2sequence
!pdb2sequence/
pdb_select
!pdb_select/
rotate_pdb
!rotate_pdb/
# Unignore all dirs
# !*/ COMMENTING OUT
# Continuous Integration Testing files:
# Ignore the contents of the "shunit2" bash unit testing tool directory
# (This directory is generated automatically by .travis.yml.)
shunit2/
# Ignore the files that were generated during continuous integration testing
tests/test_*.rec
tests/test_*.bnpts
tests/test_*.ply
tests/test_*.obj
tests/test_*.txt
# ...but DON'T ignore the original source images (which are needed by the tests)
!tests/test_image_membrane.rec
!tests/test_blob_detect.rec
!tests/test_blob_detect_mask.rec
!tests/test_1d_example.rec
# ...or the scripts which are used for testing
!tests/test_membrane_detection.sh
!tests/test_blob_detection.sh
!tests/test_watershed.sh
!tests/test_fluctuation_filter.sh
!tests/test_supervised_pos.txt
!tests/test_supervised_neg.txt
# There are some python scripts bundled with this software.
# The remainder of this file is (mostly) python specific:
# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class
# Distribution / packaging
.Python
env/
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
#lib/ <-- I use this subdirectory
lib64/
parts/
sdist/
var/
wheels/
*.egg-info/
.installed.cfg
*.egg
# PyInstaller
# Usually these files are written by a python script from a template
# before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec
# Installer logs
pip-log.txt
pip-delete-this-directory.txt
# Unit test / coverage reports
htmlcov/
.tox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*,cover
.hypothesis/
# Translations
*.mo
*.pot
# Scrapy stuff:
.scrapy
# Sphinx documentation
docs/_build/
# PyBuilder
target/
# Jupyter Notebook
.ipynb_checkpoints
# pyenv
.python-version
# celery beat schedule file
celerybeat-schedule
# dotenv
.env
# virtualenv
.venv/
venv/
ENV/
# Spyder project settings
.spyderproject
# Rope project settings
.ropeproject