TMB (tumor mutation burden)
- Python >=3.6
- pip3
- pipenv (it is the recommended way to rule packages and environments)
- pysam
Example of installation packages and Python 3.6 in Ubuntu:
sudo apt install python3.6
alias python='usr/bin/python3.6
sudo apt install python3-pip
pip3 install pipenv
Run pipenv install pysam in project directory