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‎INSTALL

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// Copyright (c) 2018, Lawrence Livermore National Security, LLC.
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// Produced at the Lawrence Livermore National Laboratory
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// Written by M.R. Dorr, J.-L. Fattebert and M.E. Wickett
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// LLNL-CODE-747500
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// All rights reserved.
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// This file is part of AMPE.
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// For details, see https://github.com/LLNL/AMPE
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// Please also read AMPE/LICENSE.
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// Redistribution and use in source and binary forms, with or without
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// modification, are permitted provided that the following conditions are met:
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// - Redistributions of source code must retain the above copyright notice,
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// this list of conditions and the disclaimer below.
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// - Redistributions in binary form must reproduce the above copyright notice,
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// this list of conditions and the disclaimer (as noted below) in the
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// documentation and/or other materials provided with the distribution.
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// - Neither the name of the LLNS/LLNL nor the names of its contributors may be
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// used to endorse or promote products derived from this software without
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// specific prior written permission.
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//
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// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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// ARE DISCLAIMED. IN NO EVENT SHALL LAWRENCE LIVERMORE NATIONAL SECURITY,
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// LLC, THE U.S. DEPARTMENT OF ENERGY OR CONTRIBUTORS BE LIABLE FOR ANY
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// DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
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// DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS
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// OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
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// HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
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// STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING
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// IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
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// POSSIBILITY OF SUCH DAMAGE.
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//
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Step 0:
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Run autoconf:
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autoconf
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This should generate the 'configure' file
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Step 1: Configure for a specific combination of platform, compiler and
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optimization level
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After checking out from the repository, cd into the top level
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directory and execute the configure script for the
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platform-compiler-optimization you want to build. For example, to
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configure for cab using the Intel C++ and Fortran compilers with
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optimization, execute
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scripts/doconfig_peloton_icpc_ifort_opt
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If a script does not exist for the platform-compiler_optimization
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combination you want, you'll have to create your own using one of the
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existing scripts as an example. Note that all of the scripts
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currently in the "scripts" subdirectory assume that they are being
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executed from the top level directory (as indicated above), which is
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the location of of the configure script the "doconfig" scripts depend
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upon.
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Step 2: Install the base (i.e., third-party) libraries for the
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new platform-compiler-optimization combination
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The configuration step just performed will create a subdirectory
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"build" of the top level directory (if it didn't already exist) and a
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subdirectory of the "build" directory labeled by the associated
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platform-compiler-optimization combination. Underneath that
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subdirectory are three more subdirectories: base, config, and objects.
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In other words, for the current example, the following directory tree
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is created if ruuning the script on cab:
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(top level directory)
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|
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|
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build
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|
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|
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cab-mpiicpc-14.0.174-ifort-14.0.174-opt
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| | |
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| | |
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base config objects
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To install the base libraries, cd into the base subdirectory and
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execute the doinstall script located there:
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cd build/cab-mpiicpc-14.0.174-ifort-14.0.174-opt/base
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doinstall
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This will compile and install the base libraries, which currently
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consist of Hypre, Sundials and SAMRAI. The SAMRAI build takes a while, so
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patience is required.
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Step 3: Build the AMPE code
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Under the build/platform-compiler-optimization/objects directory
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created by the configuration step performed in Step 1, you will find a
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directory tree that mirrors all of the subdirectories of the top level
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source directory that contain a "Makefile.in" file.
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To build the AMPE code, just cd to the objects directory amd gmake:
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cd build/cab-mpiicpc-14.0.174-ifort-14.0.174-opt/objects
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gmake
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The object files and executable are generated in the current
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directory. You can run the code from there. Note that the input
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files (which do not depend on the specific choice of
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platform-compiler-optimization) will still be over in the common
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source directory, so you will have to specify the path (or perhaps
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make a link). For example,
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srun -n32 -ppdebug ampe2d top-level-directory/ampe/trunk/examples/AuNi_2D/9grains_AuNi_initial.input
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Miscellaneous notes:
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1. The configuration performed in Step 1 generates the Makefile in
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build/cab-mpiicpc-14.0.174-ifort-14.0.174-opt/objects from the template Makefile.in in
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source. This includes the generation of the file Makefile.depend in
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source, which describes the build dependencies. This means that if
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any changes are made to the source code that could affect the
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dependencies, the configuration step should be redone.

‎LICENSE

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Copyright (c) 2006-2018, Lawrence Livermore National Security, LLC.
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Produced at the Lawrence Livermore National Laboratory
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Written by:
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Milo R. Dorr ([email protected])
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Jean-Luc Fattebert ([email protected])
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Mike E. Wickett ([email protected])
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LLNL-CODE-747500.
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All rights reserved.
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This file is part of AMPE. For details, see https://github.com/LLNL/AMPE.
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Redistribution and use in source and binary forms, with or without modification,
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are permitted provided that the following conditions are met:
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- Redistributions of source code must retain the above copyright notice, this
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list of conditions and the disclaimer below.
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- Redistributions in binary form must reproduce the above copyright notice,
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this list of conditions and the disclaimer (as noted below) in the
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documentation and/or other materials provided with the distribution.
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- Neither the name of the LLNS/LLNL nor the names of its contributors may
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be used to endorse or promote products derived from this software without
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specific prior written permission.
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THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
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ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
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WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
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DISCLAIMED. IN NO EVENT SHALL LAWRENCE LIVERMORE NATIONAL SECURITY, LLC, THE
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U.S. DEPARTMENT OF ENERGY OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT,
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INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
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LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
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PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
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LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
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OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
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ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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Additional BSD Notice
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1. This notice is required to be provided under our contract with the U.S.
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Department of Energy (DOE). This work was produced at Lawrence Livermore
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National Laboratory under Contract No. DE-AC52-07NA27344 with the DOE.
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2. Neither the United States Government nor Lawrence Livermore National
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Security, LLC nor any of their employees, makes any warranty, express or
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implied, or assumes any liability or responsibility for the accuracy,
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completeness, or usefulness of any information, apparatus, product, or process
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disclosed, or represents that its use would not infringe privately-owned rights.
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3. Also, reference herein to any specific commercial products, process, or
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services by trade name, trademark, manufacturer or otherwise does not
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necessarily constitute or imply its endorsement, recommendation, or favoring by
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the United States Government or Lawrence Livermore National Security, LLC. The
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views and opinions of authors expressed herein do not necessarily state or
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reflect those of the United States Government or Lawrence Livermore National
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Security, LLC, and shall not be used for advertising or product endorsement
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purposes.
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‎README.md

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AMPE v2.0
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=========
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Adaptive Mesh Phase-field Evolution
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Authors
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-------
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* Milo R. Dorr ([email protected])
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* Jean-Luc Fattebert ([email protected])
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* Mike E. Wickett ([email protected])
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Dependencies
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------------
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* [Hypre] (https://github.com/LLNL/hypre)
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* [SAMRAI] (https://github.com/LLNL/SAMRAI)
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* [CPODES] (https://simtk.org/projects/cpodes)
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* [Sundials] (https://github.com/LLNL/sundials)
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* [HDF5] (https://support.hdfgroup.org/HDF5)
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* [NetCDF] (https://www.unidata.ucar.edu/software/netcdf)
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* [BOOST] (http://www.boost.org)
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Since CPODES is currently not distributed with Sundials, and SAMRAI
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does not supports the lastest SUNDIALS release, modifications to
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these libraries had to be made. The modified libraries are distributed
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with this code under the 'base' directory and need to be built before
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building the main code.
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References
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----------
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M. R. Dorr, J.-L. Fattebert, M. E. Wickett, J. F. Belak, P. E. A. Turchi,
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"A Numerical Algorithm for the Solution of a Phase-Field Model of
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Polycrystalline materials",
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J. Comp. Phys. 229 (3), p. 626-641 (2010)
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J.-L. Fattebert, M. E. Wickett, P. E. A. Turchi,
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"Phase-field modeling of coring during solidification of Au-Ni alloy using
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quaternions and CALPHAD input",
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ACTA MATERIALIA, 62, (2014), 89-104
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Release
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-------
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Copyright (c) 2018, Lawrence Livermore National Security, LLC.
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Produced at the Lawrence Livermore National Laboratory.
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All rights reserved.
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Unlimited Open Source - BSD Distribution
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For release details and restrictions, please read the LICENSE file.
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It is also linked here:
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- [LICENSE](./LICENSE)
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`LLNL-CODE-747500` `OCEC-18-028`
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‎aclocal.m4

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# generated automatically by aclocal 1.9.2 -*- Autoconf -*-
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# Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003, 2004
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# Free Software Foundation, Inc.
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# This file is free software; the Free Software Foundation
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# gives unlimited permission to copy and/or distribute it,
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# with or without modifications, as long as this notice is preserved.
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# This program is distributed in the hope that it will be useful,
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# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
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# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
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# PARTICULAR PURPOSE.
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m4_include([config/arg-with-environment.m4])
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m4_include([config/btng.m4])
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m4_include([config/casc_cxx.m4])
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m4_include([config/casc_libs_and_headers.m4])
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m4_include([config/casc_misc.m4])
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m4_include([config/casc_mpi.m4])
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m4_include([config/compiler-id.m4])
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m4_include([config/compiling-boolean.m4])
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m4_include([config/compiling-namespace.m4])
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m4_include([config/split-libs-string.m4])
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m4_include([config/support-hdf5.m4])
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m4_include([config/support-boost.m4])
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m4_include([config/support-netcdf.m4])
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m4_include([config/support-hypre.m4])
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m4_include([config/support-restrict.m4])
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m4_include([config/variable-header-filenames.m4])

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