####################################################################################################
# Starting pipeline at Tue Nov 01 11:48:41 UTC 2022
# Input files:  /datoslab/huki/8samples/barcode01/f2660b5a_23.fastq.gz
# Output Log:  .bpipe/logs/3417959.log
# ################ Finished at Tue Nov 01 11:48:41 UTC 2022 Duration = 0.121 seconds #################



####################################################################################################
# Starting pipeline at Tue Nov 01 11:49:16 UTC 2022
# Input files:  /datoslab/huki/8samples/barcode01/PAM60621_pass_barcode01_f2660b5a_689.fastq.gz
# Output Log:  .bpipe/logs/3418137.log
# Stage run_check
echo "Running JAFFA version 2.4_dev" ;             echo "Checking for required data files..." ;             for i in /bin/jaffa/mm39_genCode22.fa /bin/jaffa/mm39_genCode22.tab /bin/jaffa/known_fusions.txt /bin/jaffa/mm39.fa /bin/jaffa/Masked_mm39.1.bt2 /bin/jaffa/mm39_genCode22.1.bt2 ;                   do ls $i 2>/dev/null || { echo "CAN'T FIND $i..." ;              echo "PLEASE DOWNLOAD and/or FIX PATH... STOPPING NOW" ; exit 1  ; } ; done ;             echo "All looking good" ;             echo "running JAFFA version 2.4_dev.. checks passed" > checks
# ################ Finished at Tue Nov 01 11:49:17 UTC 2022 Duration = 0.259 seconds #################