.cirrus.yml

macos_instance:
  image: ghcr.io/cirruslabs/macos-ventura-base:latest

build_wheel_task:
  skip: $CIRRUS_BRANCH != 'master' && $CIRRUS_TAG == ''

  env:
     PATH: $HOME/miniconda3/bin/:$PATH

  clone_submodules_script:
    - git submodule update --init

  conda_script:
    - wget  --quiet https://repo.anaconda.com/miniconda/Miniconda3-py39_4.12.0-MacOSX-arm64.sh -O ~/miniconda.sh
    - bash ~/miniconda.sh -b -p $HOME/miniconda3
    - export PATH="$HOME/miniconda3/bin/:$PATH"
    - conda create -n py3.9 python=3.9
    - conda create -n py3.10 python=3.10
    - conda create -n py3.11 python=3.11
    - conda create -n py3.12 python=3.12

  software_cache:
    folder: $HOME/software

  build_dependencies_script:
    - sudo /usr/sbin/softwareupdate --install-rosetta --agree-to-license
    - brew update
    - brew install --force --verbose
                       ccache
                       fftw
                       llvm
                       libomp
                       xquartz
                       xerces-c
                       wget
    - export LDFLAGS="-L/usr/local/opt/llvm/lib"
    - export CPPFLAGS="-I/usr/local/opt/llvm/include -fopenmp"
    - brew install qt
    - mkdir -p $HOME/software
    - cd $HOME/software
    - mkdir -p geant4
    - cd geant4
    - rm -rf src bin data
    - mkdir -p src bin data
    - if [ ! -d "src/source" ] ; then git clone --branch v11.2.1 https://github.com/Geant4/geant4.git --depth 1 src ; fi
    - cd bin
    - cmake -DCMAKE_CXX_FLAGS=-std=c++17
            -DGEANT4_INSTALL_DATA=OFF
            -DGEANT4_INSTALL_DATADIR=$HOME/software/geant4/data
            -DGEANT4_USE_QT=ON
            -DGEANT4_USE_OPENGL_X11=ON
            -DGEANT4_USE_QT_QT6=ON
            -DGEANT4_BUILD_MULTITHREADED=ON
            -DGEANT4_USE_SYSTEM_EXPAT=OFF
            -DGEANT4_USE_GDML=ON
            ../src
    - make -j4
    - cd $HOME/software
    - mkdir -p itk
    - cd itk
    - rm -rf src bin
    - mkdir -p src bin
    - if [ ! -d "src/CMake" ] ; then git clone --branch v5.2.1 https://github.com/InsightSoftwareConsortium/ITK.git --depth 1 src ; fi
    - cd bin
    - cmake -DCMAKE_CXX_FLAGS=-std=c++17
            -DBUILD_TESTING=OFF
            -DITK_USE_FFTWD=ON
            -DITK_USE_FFTWF=ON
            -DITK_USE_SYSTEM_FFTW:BOOL=ON
            ../src
    - make -j4

  opengate_core_script:
    - conda info
    - conda list
    - conda init bash
    - source ~/.bash_profile
    - ls /opt/homebrew/share/qt/plugins/platforms
    - source $HOME/software/geant4/bin/geant4make.sh
    - export CMAKE_PREFIX_PATH=$HOME/software/geant4/bin:$HOME/software/itk/bin/:${CMAKE_PREFIX_PATH}
    - ls
    - cd core
    - mkdir opengate_core/plugins
    - cp -r /opt/homebrew/share/qt/plugins/platforms/* opengate_core/plugins/
    - cp -r /opt/homebrew/share/qt/plugins/imageformats/* opengate_core/plugins/
    - ls /opt/homebrew/lib
    - cd ..
    - mkdir all_dist
    - |
      for PYVERSION in 3.9 3.10 3.11 3.12; do
        cd core
        rm -rf dist
        conda activate py$PYVERSION;
        pip install wget colored
        pip install wheel delocate
        python setup.py sdist bdist_wheel
        export DYLD_LIBRARY_PATH=$HOME/software/geant4/bin/BuildProducts/lib:/opt/homebrew/share/qt/plugins/platforms/:/opt/X11/lib/:$DYLD_LIBRARY_PATH:/opt/homebrew/lib
        python -c "import os,delocate; print(os.path.join(os.path.dirname(delocate.__file__), 'tools.py'));quit()" | xargs -I{} sed -i."" "s/first, /input.pop('i386',None); first, /g" {}
        delocate-listdeps --all dist/*.whl
        delocate-wheel -w fixed_wheels -v dist/*.whl
        rm -rf dist
        ls fixed_wheels
        delocate-listdeps --all fixed_wheels/*.whl
        mv fixed_wheels dist
        cd ..
        cp core/dist/* all_dist/
      done
    - mv all_dist dist

  binaries_artifacts:
    path: dist/*

pypi_push_task:
  depends_on:
    - build_wheel
  only_if: $CIRRUS_TAG != ''
  env:
     PATH: $HOME/miniconda3/bin/:$PATH

  conda_script:
    - wget  --quiet https://repo.anaconda.com/miniconda/Miniconda3-py39_4.12.0-MacOSX-arm64.sh -O ~/miniconda.sh
    - bash ~/miniconda.sh -b -p $HOME/miniconda3
    - export PATH="$HOME/miniconda3/bin/:$PATH"

  software_cache:
    folder: $HOME/software

  env:
    TWINE_REPOSITORY: pypi
    TWINE_USERNAME: __token__
    TWINE_PASSWORD: $PYPI_TOKEN

  build_dependencies_script:
    - sudo /usr/sbin/softwareupdate --install-rosetta --agree-to-license
    - brew update
    - brew install --force --verbose
                       ccache
                       fftw
                       llvm
                       libomp
                       xquartz
                       wget
    - export LDFLAGS="-L/usr/local/opt/llvm/lib"
    - export CPPFLAGS="-I/usr/local/opt/llvm/include -fopenmp"
    - conda info
    - conda list
    - which python
    - pip install wget colored
    - pip install cibuildwheel==2.11.2
    - pip install twine

  publish_script:
    - wget https://api.cirrus-ci.com/v1/artifact/build/$CIRRUS_BUILD_ID/build_wheel/binaries.zip
    - unzip binaries
    - twine upload dist/*