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In bio_ner list the entities we actually want to find in the prompt #519

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kjappelbaum opened this issue Dec 2, 2023 · 0 comments
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"/scratch/micpie/export/bio_ner_6/test_0-0.jsonl": "{"text":"Task: Please carry out the NER task for the the text below.\nText: To this end, two candidate anti-angiogenic RNA-damaging agents, onconase and (-4) rhEDN, were screened for their effects on endothelial cell proliferation using three distinct types of endothelial cells in culture: HPV-16 E6\/E7-immortalized human umbilical vein endothelial cells (HUVECs), a Kras-transformed HPV-16 E6\/E7 HUVEC (Rhim et al., Carcinogenesis 4, 673-681, 1998), and primary HUVECs..\nConstrain: Please, only list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text.\nResult: endothelial cell,130,146,Anatomy\nendothelial cells,191,208,Anatomy\nhuman umbilical vein endothelial cells,253,291,Anatomy\nHUVECs,294,300,Anatomy\nHUVEC,341,346,Anatomy\nHUVECs,410,416,Anatomy"} {"text":"Task: Please carry out the NER task for the the text below.\nText: To investigate these hypotheses, the virome capture sequencing for vertebrate viruses (VirCapSeq-VERT) platform was employed to detect RNA transcripts from known and novel viruses in fresh frozen lymph node tissue from CD patients (12 UCD, 11 HHV-8-negative MCD [ idiopathic MCD; iMCD], and two HHV-8-positive MCD) and related diseases (three T cell lymphoma and three Hodgkin lymphoma)..\nConstrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text.\nResult: CD patients,222,233,state\nUCD,239,242,state\nHHV - 8 - negative MCD,247,269,state\nHHV - 8 - positive MCD,303,325,state\nT cell lymphoma,356,371,state\nHodgkin lymphoma,382,398,state"}",
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