test: fix the tests after the most recent changes

Author: jrdh

tests/emu/views/test_mss.py

@@ -40,6 +40,7 @@ def test_transform(mss_view: MSSView):
         "width": 6638,
         "height": 10199,
         "orientation": "Horizontal (normal)",
+        "old_asset_id": "0d5f124013467e40307c6e0dc7595cd92d25b907",
         "derivatives": [
             {"file": "BM000019319.thumb.jpg", "width": 59, "height": 90},
             {"file": "BM000019319.120x10199.jpeg", "width": 120, "height": 184},
@@ -67,6 +68,8 @@ def test_transform_no_derivatives(mss_view: MSSView):
         "file": "BM000019319.tif",
         "width": 6638,
         "height": 10199,
+        "old_asset_id": "0d5f124013467e40307c6e0dc7595cd92d25b907",
+        "orientation": "Horizontal (normal)",
     }
 
 
@@ -76,7 +79,7 @@ def test_transform_no_orientation(mss_view: MSSView):
     # the associated tag and tag name bits EMu exports)
     for field in ["ExiTag", "ExiName", "ExiValue"]:
         # in the test data the orientation tag is the 8th element of the exif lists
-        del data[field][8]
+        data[field] = tuple(v for i, v in enumerate(data[field]) if i != 8)
     record = SourceRecord(SAMPLE_IMAGE_ID, data, "test")
 
     data = mss_view.transform(record)

tests/emu/views/test_preparation.py

@@ -93,6 +93,8 @@ def test_transform_mol_prep(preparation_view: PreparationView):
         "preparationType": "DNA Extract",
         "preparationContents": "**OTHER_SOMATIC_ANIMAL_TISSUE**",
         "preparationDate": "2022-05-09",
+        "occurrenceID": "f11c9c35-4da5-45e5-9dbb-6f8f55b26aa7",
+        "purpose": "DNA barcoding only",
     }
 
 
@@ -110,6 +112,8 @@ def test_transform_mammal_part(preparation_view: PreparationView):
         "identifier": "FF06063966",
         "preparationProcess": "Flash Freezing: Dry Ice",
         "preparationContents": "MUSCLE",
+        "occurrenceID": "541cb421-2a3f-4699-ad3b-8030f36afffa",
+        "purpose": "DNA barcoding only",
     }
 
 
@@ -140,6 +144,8 @@ def test_transform_mol_prep_with_voucher_direct(
         "decimalLatitude": "10.0833333",
         "decimalLongitude": "35.6333333",
         "locality": "Forward base three, Mouth of Didessa River, Blue Nile Gorge, Ethiopia, Alt. 900 m",
+        "occurrenceID": "f11c9c35-4da5-45e5-9dbb-6f8f55b26aa7",
+        "purpose": "DNA barcoding only",
     }
 
 
@@ -177,6 +183,8 @@ def test_transform_mol_prep_with_voucher_indirect(
         "decimalLatitude": "10.0833333",
         "decimalLongitude": "35.6333333",
         "locality": "Forward base three, Mouth of Didessa River, Blue Nile Gorge, Ethiopia, Alt. 900 m",
+        "occurrenceID": "f11c9c35-4da5-45e5-9dbb-6f8f55b26aa7",
+        "purpose": "DNA barcoding only",
     }
 
 
@@ -208,6 +216,8 @@ def test_transform_mammal_part_with_voucher_direct(
         "decimalLatitude": "10.0833333",
         "decimalLongitude": "35.6333333",
         "locality": "Forward base three, Mouth of Didessa River, Blue Nile Gorge, Ethiopia, Alt. 900 m",
+        "occurrenceID": "541cb421-2a3f-4699-ad3b-8030f36afffa",
+        "purpose": "DNA barcoding only",
     }
 
 
@@ -244,6 +254,8 @@ def test_transform_mammal_part_with_voucher_indirect(
         "decimalLatitude": "10.0833333",
         "decimalLongitude": "35.6333333",
         "locality": "Forward base three, Mouth of Didessa River, Blue Nile Gorge, Ethiopia, Alt. 900 m",
+        "occurrenceID": "541cb421-2a3f-4699-ad3b-8030f36afffa",
+        "purpose": "DNA barcoding only",
     }
 
 

tests/emu/views/test_specimens.py

@@ -248,7 +248,7 @@ def test_transform_with_linked_data(
         "superfamily": "Chalcidoidea",
         "taxonRank": "Species",
         # added via the mammal part link
-        "preparations": ["Skull"],
+        "preparations": "Skull",
         # added via the gbif link
         "gbifID": "100",
         "gbifIssue": issues,

tests/test_config.py

@@ -85,6 +85,7 @@ def test_valid(self, tmp_path: Path):
 artefact_id: 'artefact'
 indexlot_id: 'indexlot'
 preparation_id: 'preparation'
+sg_prefix: 'test'
 iiif_base_url: 'https://not.a.real.domain.com/media'
 elasticsearch:
   hosts: