Update Apptainer build to pull git repo

Author: ppinchuk

.github/workflows/apptainer-build-deploy.yml

@@ -14,8 +14,7 @@ jobs:
         include:
           - os: ubuntu-latest
             artifact_name: gaps.sif
-            asset_name: gaps-linux-amd64
-            body: GAPs Apptainer Image (ubuntu-latest)
+            asset_name: gaps-linux-amd64.sif
         #   - os: windows-latest
         #     artifact_name: mything.exe
         #     asset_name: mything-windows-amd64
@@ -51,4 +50,3 @@ jobs:
           asset_name: ${{ matrix.asset_name }}
           tag: ${{ github.ref }}
           overwrite: true
-          body: ${{ matrix.body }}

Apptainer

@@ -9,10 +9,14 @@ From: python:3.11
 %post
     echo "Installing vim"
     apt-get update && apt-get -y upgrade
-    apt-get -y --allow-unauthenticated install vim
+    apt-get -y --allow-unauthenticated install vim git wget nano make
+
+    echo "Downloading GAPs"
+    git clone https://github.com/NREL/gaps.git
 
     echo "Installing GAPs..."
-    pip install NREL-gaps
+    cd gaps
+    pip install -e .
 
 %runscript
     "$@"