From 4f1e2a8cbe7385e72582cecff6163d1fed7e0796 Mon Sep 17 00:00:00 2001
From: ShastriPaturi <shastri.paturi@noaa.gov>
Date: Wed, 28 Feb 2024 20:03:27 +0000
Subject: [PATCH 1/3] fix path

---
 jobs/JGLOBAL_PREP_OCEAN_OBS | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/jobs/JGLOBAL_PREP_OCEAN_OBS b/jobs/JGLOBAL_PREP_OCEAN_OBS
index a6fcf9c9b32..fde61dcd89d 100755
--- a/jobs/JGLOBAL_PREP_OCEAN_OBS
+++ b/jobs/JGLOBAL_PREP_OCEAN_OBS
@@ -20,7 +20,7 @@ export PYTHONPATH=${HOMEgfs}/sorc/gdas.cd/ush:${PYTHONPATH}
 ###############################################################
 # Run relevant script
 
-EXSCRIPT=${GDASPREPOCNOBSPY:-${HOMEgfs}/ush/exglobal_prep_ocean_obs.py}
+EXSCRIPT=${GDASPREPOCNOBSPY:-${HOMEgfs}/scripts/exglobal_prep_ocean_obs.py}
 ${EXSCRIPT}
 status=$?
 [[ ${status} -ne 0 ]] && exit "${status}"

From 30b2294c5d9d0904ec058fbcc2a19c96a2afa84c Mon Sep 17 00:00:00 2001
From: ShastriPaturi <shastri.paturi@noaa.gov>
Date: Mon, 4 Mar 2024 16:45:43 -0600
Subject: [PATCH 2/3] insitu BUFR2IODA related

---
 jobs/JGLOBAL_PREP_OCEAN_OBS         | 2 ++
 parm/config/gfs/config.prepoceanobs | 4 ++++
 2 files changed, 6 insertions(+)

diff --git a/jobs/JGLOBAL_PREP_OCEAN_OBS b/jobs/JGLOBAL_PREP_OCEAN_OBS
index fde61dcd89d..acc5a53f5f7 100755
--- a/jobs/JGLOBAL_PREP_OCEAN_OBS
+++ b/jobs/JGLOBAL_PREP_OCEAN_OBS
@@ -16,6 +16,8 @@ YMD=${PDY} HH=${cyc} generate_com -rx COMOUT_OBS:COM_OBS_TMPL
 
 # Add prep_marine_obs.py to PYTHONPATH
 export PYTHONPATH=${HOMEgfs}/sorc/gdas.cd/ush:${PYTHONPATH}
+# Add gen_bufr2ioda.py to PYTHONPATH
+export PYTHONPATH=${HOMEgfs}/sorc/gdas.cd/ush/ioda/bufr2ioda:${PYTHONPATH}
 
 ###############################################################
 # Run relevant script
diff --git a/parm/config/gfs/config.prepoceanobs b/parm/config/gfs/config.prepoceanobs
index 56fc349ce23..b6b8e0657ef 100644
--- a/parm/config/gfs/config.prepoceanobs
+++ b/parm/config/gfs/config.prepoceanobs
@@ -15,6 +15,10 @@ export OBS_YAML=${OBS_LIST}
 # ocean analysis needs own dmpdir until standard dmpdir has full ocean obs
 export DMPDIR=@DMPDIR@
 
+# For BUFR2IODA json and python scripts
+export JSON_TMPL_DIR=${HOMEgfs}/sorc/gdas.cd/parm/ioda/bufr2ioda
+export BUFR2IODA_PY_DIR=${HOMEgfs}/sorc/gdas.cd/ush/ioda/bufr2ioda
+export KEEPDATA='YES'
 # Get task specific resources
 . "${EXPDIR}/config.resources" prepoceanobs
 echo "END: config.prepoceanobs"

From 81015c58db5d9a54c4df365af1fe07ccd1902074 Mon Sep 17 00:00:00 2001
From: ShastriPaturi <shastri.paturi@noaa.gov>
Date: Tue, 19 Mar 2024 12:18:48 -0500
Subject: [PATCH 3/3] path to bufr2ioda

---
 jobs/JGLOBAL_PREP_OCEAN_OBS | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/jobs/JGLOBAL_PREP_OCEAN_OBS b/jobs/JGLOBAL_PREP_OCEAN_OBS
index acc5a53f5f7..c459a45dbaa 100755
--- a/jobs/JGLOBAL_PREP_OCEAN_OBS
+++ b/jobs/JGLOBAL_PREP_OCEAN_OBS
@@ -22,7 +22,7 @@ export PYTHONPATH=${HOMEgfs}/sorc/gdas.cd/ush/ioda/bufr2ioda:${PYTHONPATH}
 ###############################################################
 # Run relevant script
 
-EXSCRIPT=${GDASPREPOCNOBSPY:-${HOMEgfs}/scripts/exglobal_prep_ocean_obs.py}
+EXSCRIPT=${GDASPREPOCNOBSPY:-${HOMEgfs}/sorc/gdas.cd/scripts/exglobal_prep_ocean_obs.py}
 ${EXSCRIPT}
 status=$?
 [[ ${status} -ne 0 ]] && exit "${status}"