problem with runSSN

[chrismahony]

Hi

When I run:

so.gene <- runSSN(object = obj, features = unique(c(features_hvg, features_dev)), scale_free = T,
robust_pca = F, data_type = "pearson", reprocess_sct = T, slot = c("scale"), batch_feature = NULL,
pca_var_explained = 0.9, optimize_resolution = T, target_purity = 0.8, step_size = 0.05, n_workers = parallel::detectCores(),
verbose = F)

I get:

Error in self$geom$rename_size && "size" %in% names(plot$mapping) :
invalid 'x' type in 'x && y'

If you could help, I would really appreciate it, thanks
Chris

[NMikolajewicz]

It's difficult to troubleshoot this error without seeing what dataset you were using... Are you able to share a downsampled version the dataset (or dropbox/google drive link) to my email ([email protected]) so that I can see where the issues arise? Alternatively, if you rerun the function with verbose = T, at which step do you encounter the error?