Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

remove-module #12

Merged
merged 2 commits into from
Nov 1, 2024
Merged

remove-module #12

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
6a979e3
remove-module
JohnTurnerNIH Oct 31, 2024
ac509de
Github Action: Lint Notebooks
Oct 31, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
782 changes: 0 additions & 782 deletions 01-RNA-Seq/.ipynb_checkpoints/RNA-seq-checkpoint.ipynb
View file
Open in desktop

This file was deleted.

20 changes: 0 additions & 20 deletions 01-RNA-Seq/.ipynb_checkpoints/rnaseq-gcb-checkpoint.config
View file
Open in desktop

This file was deleted.

44 changes: 6 additions & 38 deletions 01-RNA-Seq/RNA-seq.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -16,9 +16,7 @@
{
"cell_type": "markdown",
"id": "0d86bb1c-96d9-495a-9382-c380ae075451",
"metadata": {
"tags": []
},
"metadata": {},
"source": [
"## <span> Pre-Module Flashcards to Revise the Basics <span>"
]
Expand All @@ -27,9 +25,7 @@
"cell_type": "code",
"execution_count": null,
"id": "f0e9ac26-e308-471a-83a4-113f767524b0",
"metadata": {
"tags": []
},
"metadata": {},
"outputs": [],
"source": [
"IRdisplay::display_html('<iframe src = \"../docs/quiz_files/rna-pre_module.html\" width=95% height=600></iframe>')"
Expand All @@ -38,9 +34,7 @@
{
"cell_type": "markdown",
"id": "b491749f-1501-40c9-ac0e-188ce48d8935",
"metadata": {
"tags": []
},
"metadata": {},
"source": [
"## <span>**1. Introduction** <a name=\"IN\"></a> </span>\n",
"### <span> Central Dogma of Molecular Biology. <span>\n",
Expand Down Expand Up @@ -200,10 +194,7 @@
"cell_type": "code",
"execution_count": null,
"id": "bb2e1f61-eea1-4464-9842-76fabae4c39a",
"metadata": {
"scrolled": true,
"tags": []
},
"metadata": {},
"outputs": [],
"source": [
"system('./nextflow run nf-core/rnaseq -c rnaseq-gcb.config -profile test,gcb', intern=TRUE)"
Expand Down Expand Up @@ -294,10 +285,7 @@
"cell_type": "code",
"execution_count": null,
"id": "a5ea70df-98ba-4a69-aeec-2baed34a72fc",
"metadata": {
"scrolled": true,
"tags": []
},
"metadata": {},
"outputs": [],
"source": [
"library(DESeq2)\n",
Expand Down Expand Up @@ -753,27 +741,7 @@
]
}
],
"metadata": {
"environment": {
"kernel": "ir",
"name": "r-cpu.4-2.m110",
"type": "gcloud",
"uri": "gcr.io/deeplearning-platform-release/r-cpu.4-2:m110"
},
"kernelspec": {
"display_name": "R",
"language": "R",
"name": "ir"
},
"language_info": {
"codemirror_mode": "r",
"file_extension": ".r",
"mimetype": "text/x-r-source",
"name": "R",
"pygments_lexer": "r",
"version": "4.2.3"
}
},
"metadata": {},
"nbformat": 4,
"nbformat_minor": 5
}
Loading
Loading