removing print statements

Author: carsen-stringer

cellpose/gui/gui.py

@@ -1502,7 +1502,6 @@ def remove_stroke(self, delete_points=True, stroke_ind=-1):
         stroke = np.array(self.strokes[stroke_ind])
         cZ = self.currentZ
         inZ = stroke[0, 0] == cZ
-        print(inZ.sum())
         if inZ:
             outpix = self.outpix[cZ, stroke[:, 1], stroke[:, 2]] > 0
             self.layerz[stroke[~outpix, 1], stroke[~outpix, 2]] = np.array([0, 0, 0, 0])
@@ -1688,7 +1687,6 @@ def add_set(self):
                 color = self.colormap[self.ncells, :3]
                 median = self.add_mask(points=self.current_point_set, color=color)
                 if median is not None:
-                    print(median)
                     self.removed_cell = []
                     self.toggle_mask_ops()
                     self.cellcolors = np.append(self.cellcolors, color[np.newaxis, :],
@@ -1728,7 +1726,6 @@ def add_mask(self, points=None, color=(100, 200, 50), dense=True):
             ar, ac = ar + vr.min() - 2, ac + vc.min() - 2
             # get dense outline
             contours = cv2.findContours(mask, cv2.RETR_EXTERNAL, cv2.CHAIN_APPROX_NONE)
-            print(contours[-2][0].shape)
             pvc, pvr = contours[-2][0][:,0].T
             vr, vc = pvr + vr.min() - 2, pvc + vc.min() - 2
             # concatenate all points
@@ -1745,15 +1742,13 @@ def add_mask(self, points=None, color=(100, 200, 50), dense=True):
                 mask[ar - vr.min() + 2, ac - vc.min() + 2] = 1
                 contours = cv2.findContours(mask, cv2.RETR_EXTERNAL,
                                             cv2.CHAIN_APPROX_NONE)
-                print(contours[-2][0].shape)
                 pvc, pvr = contours[-2][0][:,0].T
                 vr, vc = pvr + vr.min() - 2, pvc + vc.min() - 2
             ars = np.concatenate((ars, ar), axis=0)
             acs = np.concatenate((acs, ac), axis=0)
             vrs = np.concatenate((vrs, vr), axis=0)
             vcs = np.concatenate((vcs, vc), axis=0)
-            print("HI", ars, acs)
-
+            
         self.draw_mask(z, ars, acs, vrs, vcs, color)
         median.append(np.array([np.median(ars), np.median(acs)]))
 

cellpose/gui/io.py

@@ -482,7 +482,8 @@ def _masks_to_gui(parent, masks, outlines=None, colors=None):
         fastremap.renumber(masks, in_place=True)
         outlines = None
         masks = masks.reshape(shape)
-    outlines = None
+    if masks.ndim == 2:
+        outlines = None
     masks = masks.astype(np.uint16) if masks.max() < 2**16 - 1 else masks.astype(
         np.uint32)
     if parent.restore and "upsample" in parent.restore:
@@ -650,7 +651,6 @@ def _save_sets(parent):
             "diameter":
                 parent.diameter
         }
-        print(dat["masks"].shape)
         if parent.restore is not None:
             dat["img_restore"] = parent.stack_filtered
         np.save(base + "_seg.npy", dat)