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motions.cabal
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motions.cabal
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-- Initial motions.cabal generated by cabal init. For further
-- documentation, see http://haskell.org/cabal/users-guide/
name: motions
version: 0.1.0.0
-- synopsis:
-- description:
license: Apache
license-file: LICENSE
-- author:
-- maintainer:
-- copyright:
category: Bioinformatics
build-type: Custom
extra-source-files: src/message.proto
cabal-version: >=1.10
library
exposed-modules: Bio.Motions.Representation.Class,
Bio.Motions.Representation.Chain,
Bio.Motions.Representation.Chain.Internal,
Bio.Motions.Representation.Chain.Slow,
Bio.Motions.Representation.Common,
Bio.Motions.Representation.Dump,
Bio.Motions.Format.DumpDeserialisation,
Bio.Motions.Format.DumpSerialisation,
Bio.Motions.Format.Proto.Delta,
Bio.Motions.Utils.FreezePredicateParser,
Bio.Motions.Utils.RepetitionGuard,
Bio.Motions.Utils.Parsec,
Bio.Motions.Utils.Random,
Bio.Motions.Utils.Geometry,
Bio.Motions.Utils.Common,
Bio.Motions.Callback.Class,
Bio.Motions.Callback.Serialisation,
Bio.Motions.Callback.Discover,
Bio.Motions.Callback.GyrationRadius,
Bio.Motions.Callback.StandardScore,
Bio.Motions.Callback.Parser.Parser,
Bio.Motions.Callback.Parser.TH,
Bio.Motions.Callback.Periodic,
Bio.Motions.Types,
Bio.Motions.Common,
Bio.Motions.PDB.Meta,
Bio.Motions.PDB.Write,
Bio.Motions.PDB.Read,
Bio.Motions.PDB.Internal,
Bio.Motions.PDB.Backend,
Bio.Motions.BED,
Bio.Motions.Engine,
Bio.Motions.Output,
Bio.Motions.Input,
Bio.Motions.Format.ProtoStream,
Bio.Motions.Format.Handle,
Bio.Motions.StateInitialisation
other-modules: Bio.Motions.Format.Proto.Callback,
Bio.Motions.Format.Proto.Callback.Type,
Bio.Motions.Format.Proto.Header,
Bio.Motions.Format.Proto.Header.ChainDescription,
Bio.Motions.Format.Proto.Header.ChainDescription.BeadDescription,
Bio.Motions.Format.Proto.Header.ChainDescription.BeadDescription.Binding,
Bio.Motions.Format.Proto.Keyframe,
Bio.Motions.Format.Proto.Keyframe.Binder,
Bio.Motions.Format.Proto.Keyframe.Chain,
Bio.Motions.Format.Proto.Point
-- other-extensions:
build-depends: base >=4.8 && <4.9,
vector >=0.11 && <0.12,
linear >=1.20 && <1.21,
mono-traversable >=0.10 && <0.11,
lens >=4.13 && <4.14,
MonadRandom >=0.4 && <0.5,
mtl >=2.2 && <2.3,
containers >=0.5 && <0.6,
transformers >=0.4 && <0.5,
parsec >=3.1 && <3.2,
template-haskell >=2.10 && <2.11,
ghc-prim >=0.4 && <0.5,
constraints >=0.8 && <0.9,
random-shuffle >=0.0.4 && <0.1,
hPDB >=1.2 && <1.21,
bytestring >=0.10 && <0.11,
filepath >=1.4 && <1.5,
protocol-buffers >=2.1.12 && <2.2.1,
hprotoc >=2.1.12 && <2.2.1,
profunctors >=5.0 && <5.3,
mwc-random >=0.13 && <0.14,
primitive >=0.6 && <0.7,
deepseq >=1.4 && <1.5,
unordered-containers >=0.2 && <0.3,
arithmoi >=0.4.1 && <0.4.2
hs-source-dirs: src
default-language: Haskell2010
ghc-options: -Wall
executable motions
main-is: Motions.hs
other-modules: LoadCallbacks,
Specialise
build-depends: base >=4.8 && <4.9,
vector >=0.11 && <0.12,
MonadRandom >=0.4 && <0.5,
optparse-applicative >=0.12 && <0.13,
transformers >=0.4 && <0.5,
split >=0.2 && <0.3,
yaml >=0.8.17 && <0.8.18,
aeson >=0.11 && <0.12,
parsec >=3.1 && <3.2,
reflection >=2.1.2 && <2.1.3,
motions
default-language: Haskell2010
ghc-options: -pgml c++ -Wall
if os(osx)
extra-libraries: cprotostream_static
else
-- Include whole libprotostream when linking.
-- Fixes "undefined reference" errors occuring due to incorrect linking order.
ld-options: -Wl,--whole-archive -lcprotostream_static -Wl,--no-whole-archive
test-suite spec
type: exitcode-stdio-1.0
main-is: Spec.hs
build-depends: motions,
base >=4.8 && <4.9,
hspec >=2.2 && <2.3,
hspec-jenkins >= 0.1.1,
QuickCheck >=2.8 && <2.9,
linear >=1.20 && <1.21,
vector >=0.11 && <0.12,
mono-traversable >=0.10 && <0.11,
parsec >=3.1 && <3.2,
containers >=0.5 && <0.6,
bytestring >=0.10 && <0.11,
lens >=4.13 && <4.14,
MonadRandom >=0.4 && <0.5,
mtl >=2.2 && <2.3,
transformers >=0.4 && <0.5,
smallcheck >=1.1 && <1.2,
hspec-smallcheck >=0.4 && <0.5,
deepseq >=1.4 && <1.5,
unordered-containers >=0.2 && <0.3
default-language: Haskell2010
hs-source-dirs: test
other-modules: SpecDiscover,
BasicSpec,
BEDSpec,
PDBSpec,
DumpSpec,
DumpSerialisationSpec,
StateInitialisationSpec,
FreezePredicateParserSpec,
LoadTestCallbacks,
SimpleCallback,
CallbackDiscoverSpec,
CallbackPeriodicSpec,
GeometrySpec
ghc-options: -pgml c++ -Wall
if os(osx)
extra-libraries: cprotostream_static
else
-- See above.
ld-options: -Wl,--whole-archive -lcprotostream_static -Wl,--no-whole-archive