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Revisions

  • Updated Configuration (markdown)

    @rakakp007 rakakp007 committed May 11, 2023
    d3ed5ab

  • Create_HC_Subset can't run if a filtered vcd file exist in the output folder

    @rakakp007 rakakp007 committed May 11, 2023
    e439642

  • add filtering caveat

    @ChaochihL ChaochihL committed Jun 2, 2022
    de7db0a

  • add slurm page

    @ChaochihL ChaochihL committed May 2, 2022
    31bc9ad

  • Created Slurm specific options (markdown)

    @ChaochihL ChaochihL committed May 2, 2022
    0da36a8

  • Updated Variant_Recalibrator (markdown)

    @ChaochihL ChaochihL committed Mar 4, 2021
    63af5b3

  • Updated Pre_Variant_Filtering (markdown)

    @ChaochihL ChaochihL committed Mar 4, 2021
    51f4a27

  • add GATK 4 updates to handler

    @ChaochihL ChaochihL committed Mar 4, 2021
    1a7417e

  • clarification

    @ChaochihL ChaochihL committed Feb 23, 2021
    fb7ab59

  • fix typo and add future features

    @ChaochihL ChaochihL committed Feb 23, 2021
    bddeaa2

  • add new handler

    @ChaochihL ChaochihL committed Feb 23, 2021
    f3b5967

  • add handler

    @ChaochihL ChaochihL committed Feb 23, 2021
    30a0ea9

  • correct filter indels step

    @ChaochihL ChaochihL committed Aug 18, 2020
    b11fa2d

  • clarify parts to pseudo conversion step

    @ChaochihL ChaochihL committed Jun 10, 2020
    04488c7

  • add navigation menu and link slides on validating files

    @ChaochihL ChaochihL committed May 27, 2020
    e222230

  • reformat and update dependencies

    @ChaochihL ChaochihL committed Apr 26, 2020
    312d65f

  • Updated Create_HC_Subset (markdown)

    @ChaochihL ChaochihL committed Apr 19, 2020
    61771d4

  • clarify how the filter indels step is coded up

    @ChaochihL ChaochihL committed Apr 19, 2020
    7ac4856

  • clarify checks

    @ChaochihL ChaochihL committed Apr 19, 2020
    14303da

  • Updated Create_HC_Subset (markdown)

    @ChaochihL ChaochihL committed Apr 17, 2020
    23a6e8f

  • Updated Create_HC_Subset (markdown)

    @ChaochihL ChaochihL committed Apr 17, 2020
    1a5b9df

  • cleanup text style

    @ChaochihL ChaochihL committed Apr 16, 2020
    2f5eb4e

  • update for GATK 4

    @ChaochihL ChaochihL committed Apr 16, 2020
    150a729

  • fix tool specification

    @ChaochihL ChaochihL committed Apr 14, 2020
    0a353e4

  • update GATK 3.8 vs GATK 4 indel realignment changes

    @ChaochihL ChaochihL committed Apr 14, 2020
    2c55547

  • Updated Indel_Realigner (markdown)

    @ChaochihL ChaochihL committed Apr 14, 2020
    ea9f3ce

  • clarify GATK 3.8 vs GATK 4 functionality

    @ChaochihL ChaochihL committed Apr 14, 2020
    8537537

  • clarify min number of samples

    @ChaochihL ChaochihL committed Feb 18, 2020
    9321a8a

  • add link to ScatterIntervalsByNs Picard tool

    @ChaochihL ChaochihL committed Feb 12, 2020
    bb301fa

  • add Genomics_DB_Import handler to sidebar

    @ChaochihL ChaochihL committed Nov 1, 2019
    215bdba