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missing some files in cancerGenomeInterpreter #101

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younis-bash opened this issue Oct 17, 2022 · 0 comments
Open

missing some files in cancerGenomeInterpreter #101

younis-bash opened this issue Oct 17, 2022 · 0 comments

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@younis-bash
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younis-bash commented Oct 17, 2022

Hi everyone

I think some files are missing in cancerGenomeInterpreter I checked the cancerGenomeInterpreterConfig.yaml it has 4 URL for the database
`cancerGenes_url: 'https://www.cancergenomeinterpreter.org/data/catalog_of_cancer_genes_latest.zip'
cancerVariants_url: 'https://www.cancergenomeinterpreter.org/data/catalog_of_validated_oncogenic_mutations_latest.zip'
cancerBioactivities_url: 'https://www.cancergenomeinterpreter.org/data/cancer_bioactivities_latest.zip'

cancerBiomarkers_url: 'https://www.cancergenomeinterpreter.org/data/cgi_biomarkers_latest.zip'
cancerBiomarkers_variant_file: 'cgi_biomarkers_per_variant.tsv'`
and when I checked the praser it used just cancerBiomarkers_url also there are expected 5 files generated from this parser and I got just 2 of them, can any one help me please?

@younis-bash younis-bash changed the title missing some database missing some files in cancerGenomeInterpreter Oct 26, 2022
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