Unsupported HDF5 version: 1.10.0

[ZhangYK124]

I tried to run the demo and got the following errors:

zyk@zyk:~/AlphaPose$ ./run.sh --indir examples/demo/ --outdir examples/results/ --vis
0
generating bbox from Faster RCNN...
/home/zyk/.local/lib/python2.7/site-packages/h5py/init.py:36: RuntimeWarning: numpy.dtype size changed, may indicate binary incompatibility. Expected 96, got 88
from ._conv import register_converters as _register_converters
/home/zyk/.local/lib/python2.7/site-packages/h5py/init.py:45: RuntimeWarning: numpy.dtype size changed, may indicate binary incompatibility. Expected 96, got 88
from . import h5a, h5d, h5ds, h5f, h5fd, h5g, h5r, h5s, h5t, h5p, h5z
/home/zyk/.local/lib/python2.7/site-packages/h5py/_hl/group.py:22: RuntimeWarning: numpy.dtype size changed, may indicate binary incompatibility. Expected 96, got 88
from .. import h5g, h5i, h5o, h5r, h5t, h5l, h5p
2018-08-03 20:56:16.377272: I tensorflow/stream_executor/cuda/cuda_gpu_executor.cc:897] successful NUMA node read from SysFS had negative value (-1), but there must be at least one NUMA node, so returning NUMA node zero
2018-08-03 20:56:16.377708: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1392] Found device 0 with properties:
name: GeForce GTX 1070 Ti major: 6 minor: 1 memoryClockRate(GHz): 1.683
pciBusID: 0000:01:00.0
totalMemory: 7.93GiB freeMemory: 7.53GiB
2018-08-03 20:56:16.377727: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1471] Adding visible gpu devices: 0
2018-08-03 20:56:16.582160: I tensorflow/core/common_runtime/gpu/gpu_device.cc:952] Device interconnect StreamExecutor with strength 1 edge matrix:
2018-08-03 20:56:16.582194: I tensorflow/core/common_runtime/gpu/gpu_device.cc:958] 0
2018-08-03 20:56:16.582206: I tensorflow/core/common_runtime/gpu/gpu_device.cc:971] 0: N
2018-08-03 20:56:16.582400: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1084] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 7267 MB memory) -> physical GPU (device: 0, name: GeForce GTX 1070 Ti, pci bus id: 0000:01:00.0, compute capability: 6.1)
Loaded network ../output/res152/coco_2014_train+coco_2014_valminusminival/default/res152.ckpt
/home/zyk/AlphaPose/examples/demo/

100%|█████████████████████████████████████████████| 3/3 [00:04<00:00, 1.41s/it]
pose estimation with RMPE...
/home/zyk/torch/install/bin/luajit: /home/zyk/torch/install/share/lua/5.1/trepl/init.lua:389: /home/zyk/torch/install/share/lua/5.1/hdf5/ffi.lua:71: Unsupported HDF5 version: 1.10.0
stack traceback:
[C]: in function 'error'
/home/zyk/torch/install/share/lua/5.1/trepl/init.lua:389: in function 'require'
/home/zyk/AlphaPose/predict/util.lua:7: in main chunk
[C]: in function 'dofile'
main-alpha-pose.lua:7: in main chunk
[C]: in function 'dofile'
.../zyk/torch/install/lib/luarocks/rocks/trepl/scm-1/bin/th:150: in main chunk
[C]: at 0x555d3807a710
/home/zyk/.local/lib/python2.7/site-packages/h5py/init.py:36: RuntimeWarning: numpy.dtype size changed, may indicate binary incompatibility. Expected 96, got 88
from ._conv import register_converters as _register_converters
/home/zyk/.local/lib/python2.7/site-packages/h5py/init.py:45: RuntimeWarning: numpy.dtype size changed, may indicate binary incompatibility. Expected 96, got 88
from . import h5a, h5d, h5ds, h5f, h5fd, h5g, h5r, h5s, h5t, h5p, h5z
/home/zyk/.local/lib/python2.7/site-packages/h5py/_hl/group.py:22: RuntimeWarning: numpy.dtype size changed, may indicate binary incompatibility. Expected 96, got 88
from .. import h5g, h5i, h5o, h5r, h5t, h5l, h5p
Traceback (most recent call last):
File "parametric-pose-nms-MPII.py", line 256, in
get_result_json(args)
File "parametric-pose-nms-MPII.py", line 243, in get_result_json
test_parametric_pose_NMS_json(delta1, delta2, mu, gamma,args.outputpath)
File "parametric-pose-nms-MPII.py", line 99, in test_parametric_pose_NMS_json
h5file = h5py.File(os.path.join(outputpath,"POSE/test-pose.h5"), 'r')
File "/home/zyk/.local/lib/python2.7/site-packages/h5py/_hl/files.py", line 312, in init
fid = make_fid(name, mode, userblock_size, fapl, swmr=swmr)
File "/home/zyk/.local/lib/python2.7/site-packages/h5py/_hl/files.py", line 142, in make_fid
fid = h5f.open(name, flags, fapl=fapl)
File "h5py/_objects.pyx", line 54, in h5py._objects.with_phil.wrapper
File "h5py/_objects.pyx", line 55, in h5py._objects.with_phil.wrapper
File "h5py/h5f.pyx", line 78, in h5py.h5f.open
IOError: Unable to open file (unable to open file: name = '/home/zyk/AlphaPose/examples/results/POSE/test-pose.h5', errno = 2, error message = 'No such file or directory', flags = 0, o_flags = 0)
visualization...
Traceback (most recent call last):
File "json-video.py", line 63, in
with open(jsonpath) as f:
IOError: [Errno 2] No such file or directory: '/home/zyk/AlphaPose/examples/results/POSE/alpha-pose-results-forvis.json'

It seems like a version compatability problem.
However, I am not familiar with LUA.
Could you kindly give me some advice?
I am using Ubuntu 18.04

[Fang-Haoshu]

I have not met such problem and just google for it. How about google-deepmind/torch-hdf5#76? You can also google for that.