jbrowse_config.json

{
  "plugins": [
    {
      "name": "Overture",
      "url": "http://localhost:9000/dist/jbrowse-plugin-overture.umd.development.js"
    }
  ],
  "assemblies": [
    {
      "name": "hg38",
      "aliases": ["GRCh38"],
      "sequence": {
        "type": "ReferenceSequenceTrack",
        "trackId": "P6R5xbRqRr",
        "adapter": {
          "type": "BgzipFastaAdapter",
          "fastaLocation": {
            "locationType": "UriLocation",
            "uri": "https://jbrowse.org/genomes/GRCh38/fasta/hg38.prefix.fa.gz"
          },
          "faiLocation": {
            "locationType": "UriLocation",
            "uri": "https://jbrowse.org/genomes/GRCh38/fasta/hg38.prefix.fa.gz.fai"
          },
          "metadataLocation": {
            "locationType": "UriLocation",
            "uri": "/path/to/fa.metadata.yaml"
          },
          "gziLocation": {
            "locationType": "UriLocation",
            "uri": "https://jbrowse.org/genomes/GRCh38/fasta/hg38.prefix.fa.gz.gzi"
          }
        },
        "displays": [
          {
            "type": "LinearReferenceSequenceDisplay",
            "displayId": "P6R5xbRqRr-LinearReferenceSequenceDisplay"
          }
        ]
      },
      "refNameAliases": {
        "adapter": {
          "type": "RefNameAliasAdapter",
          "location": {
            "locationType": "UriLocation",
            "uri": "https://s3.amazonaws.com/jbrowse.org/genomes/GRCh38/hg38_aliases.txt"
          }
        }
      },
      "cytobands": {
        "adapter": {
          "type": "CytobandAdapter",
          "cytobandLocation": {
            "locationType": "UriLocation",
            "uri": "https://s3.amazonaws.com/jbrowse.org/genomes/GRCh38/cytoBand.txt"
          }
        }
      },
      "displayName": "Homo sapiens (hg38)"
    }
  ]
}