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performance improvement: network moves #8

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crsl4 opened this issue Jul 9, 2015 · 2 comments
Open

performance improvement: network moves #8

crsl4 opened this issue Jul 9, 2015 · 2 comments
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crsl4 commented Jul 9, 2015

SPR move needed, and read new paper on network moves: Huber et al. 2015
@crsl4 crsl4 added the to do label Jul 9, 2015
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crsl4 commented Aug 26, 2015

also, we commented a while ago to keep a ranking of the quartets (quartets poorly fit with deviance), so that the data can motivate what moves to propose

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crsl4 commented Nov 16, 2015

also, it might be good idea to accept networks with lower pseudolik with some probability, instead of rejecting them always

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