From a62557635e9645132532ca8a37746f79d3773387 Mon Sep 17 00:00:00 2001
From: gaelforget <gforget@mit.edu>
Date: Thu, 2 Dec 2021 09:53:27 -0500
Subject: [PATCH 01/11] try with nightly again

---
 .github/workflows/ci.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 8499cc59..3a6b50b1 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -17,6 +17,7 @@ jobs:
         version:
           - '1.6' # Replace this with the minimum Julia version that your package supports. E.g. if your package requires Julia 1.5 or higher, change this to '1.5'.
           - '1' # Leave this line unchanged. '1' will automatically expand to the latest stable 1.x release of Julia.
+          - 'nightly'
         os:
           - ubuntu-latest
         arch:

From fe46c71d36a474b697c3dddeb4bbec120133e717 Mon Sep 17 00:00:00 2001
From: gaelforget <gforget@mit.edu>
Date: Thu, 2 Dec 2021 11:32:05 -0500
Subject: [PATCH 02/11] add Artifacts from stdlib

---
 Project.toml                   | 1 +
 src/IndividualDisplacements.jl | 2 +-
 2 files changed, 2 insertions(+), 1 deletion(-)

diff --git a/Project.toml b/Project.toml
index 4e9f63fb..0587af5c 100644
--- a/Project.toml
+++ b/Project.toml
@@ -4,6 +4,7 @@ authors = ["gaelforget <gforget@mit.edu>"]
 version = "0.3.4"
 
 [deps]
+Artifacts = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
 CFTime = "179af706-886a-5703-950a-314cd64e0468"
 CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"
 CyclicArrays = "6023044f-b3ef-4c22-8399-3ec90a0c9b75"
diff --git a/src/IndividualDisplacements.jl b/src/IndividualDisplacements.jl
index 08073670..3da89c0a 100644
--- a/src/IndividualDisplacements.jl
+++ b/src/IndividualDisplacements.jl
@@ -1,7 +1,7 @@
 module IndividualDisplacements
 
 using MeshArrays, CyclicArrays, OrdinaryDiffEq, DataFrames
-using NetCDF, Dates, CFTime, CSV, UnPack, Random, LazyArtifacts
+using NetCDF, Dates, CFTime, CSV, UnPack, Random, Artifacts, LazyArtifacts
 
 p=dirname(pathof(IndividualDisplacements))
 artifact_toml = joinpath(p, "../Artifacts.toml")

From 6f8cb179f732c74f7e090403b6f68efea6398370 Mon Sep 17 00:00:00 2001
From: gaelforget <gforget@mit.edu>
Date: Thu, 2 Dec 2021 11:52:46 -0500
Subject: [PATCH 03/11] call flt_example_download pre-emptively

---
 test/runtests.jl | 1 +
 1 file changed, 1 insertion(+)

diff --git a/test/runtests.jl b/test/runtests.jl
index 4257e324..ceeafc74 100644
--- a/test/runtests.jl
+++ b/test/runtests.jl
@@ -5,6 +5,7 @@ OceanStateEstimation.get_ecco_velocity_if_needed()
 OceanStateEstimation.get_occa_velocity_if_needed()
 GridLoad(GridSpec("LatLonCap",MeshArrays.GRID_LLC90))
 GridLoad(GridSpec("PeriodicChannel",MeshArrays.GRID_LL360))
+IndividualDisplacements.flt_example_download()
 
 @testset "test3" begin
     p=dirname(pathof(IndividualDisplacements))

From 52f94383164b7a6fc6f2fa4d12772bf336882aea Mon Sep 17 00:00:00 2001
From: gaelforget <gforget@mit.edu>
Date: Fri, 17 Dec 2021 22:30:09 -0500
Subject: [PATCH 04/11] update example

---
 examples/basics/random_flow_field.jl | 1573 +-------------------------
 1 file changed, 5 insertions(+), 1568 deletions(-)

diff --git a/examples/basics/random_flow_field.jl b/examples/basics/random_flow_field.jl
index 7c8db4ac..f6f96921 100644
--- a/examples/basics/random_flow_field.jl
+++ b/examples/basics/random_flow_field.jl
@@ -1,11 +1,14 @@
 ### A Pluto.jl notebook ###
-# v0.17.0
+# v0.17.3
 
 using Markdown
 using InteractiveUtils
 
 # ╔═╡ 192fc454-054c-4364-a9ed-1aa4969b612a
 begin
+	using Pkg
+	Pkg.activate()
+	
 	using IndividualDisplacements, DataFrames, MeshArrays, PlutoUI
 	import CairoMakie as Mkie
 
@@ -180,7 +183,7 @@ function random_flow_field(option::String;np=12,nq=18)
     ϕ=γ.read(tmp1,MeshArray(γ,Float64))
 
     #apply smoother
-    ϕ=smooth(ϕ,3*Γ.DXC,3*Γ.DYC,Γ);
+    ϕ=MeshArrays.smooth(ϕ,3*Γ.DXC,3*Γ.DYC,Γ);
 
 	#derive flow field
 	if option=="Divergent Component"
@@ -212,1570 +215,6 @@ begin
 	I
 end
 
-# ╔═╡ 00000000-0000-0000-0000-000000000001
-PLUTO_PROJECT_TOML_CONTENTS = """
-[deps]
-CairoMakie = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0"
-DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
-IndividualDisplacements = "b92f0c32-5b7e-11e9-1d7b-238b2da8b0e6"
-MeshArrays = "cb8c808f-1acf-59a3-9d2b-6e38d009f683"
-PlutoUI = "7f904dfe-b85e-4ff6-b463-dae2292396a8"
-
-[compat]
-CairoMakie = "~0.6.6"
-DataFrames = "~1.2.2"
-IndividualDisplacements = "~0.3.3"
-MeshArrays = "~0.2.26"
-PlutoUI = "~0.7.18"
-"""
-
-# ╔═╡ 00000000-0000-0000-0000-000000000002
-PLUTO_MANIFEST_TOML_CONTENTS = """
-# This file is machine-generated - editing it directly is not advised
-
-[[AbstractFFTs]]
-deps = ["LinearAlgebra"]
-git-tree-sha1 = "485ee0867925449198280d4af84bdb46a2a404d0"
-uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c"
-version = "1.0.1"
-
-[[AbstractPlutoDingetjes]]
-deps = ["Pkg"]
-git-tree-sha1 = "0ec322186e078db08ea3e7da5b8b2885c099b393"
-uuid = "6e696c72-6542-2067-7265-42206c756150"
-version = "1.1.0"
-
-[[AbstractTrees]]
-git-tree-sha1 = "03e0550477d86222521d254b741d470ba17ea0b5"
-uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c"
-version = "0.3.4"
-
-[[Adapt]]
-deps = ["LinearAlgebra"]
-git-tree-sha1 = "84918055d15b3114ede17ac6a7182f68870c16f7"
-uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
-version = "3.3.1"
-
-[[Animations]]
-deps = ["Colors"]
-git-tree-sha1 = "e81c509d2c8e49592413bfb0bb3b08150056c79d"
-uuid = "27a7e980-b3e6-11e9-2bcd-0b925532e340"
-version = "0.4.1"
-
-[[ArgTools]]
-uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
-
-[[ArnoldiMethod]]
-deps = ["LinearAlgebra", "Random", "StaticArrays"]
-git-tree-sha1 = "f87e559f87a45bece9c9ed97458d3afe98b1ebb9"
-uuid = "ec485272-7323-5ecc-a04f-4719b315124d"
-version = "0.1.0"
-
-[[ArrayInterface]]
-deps = ["Compat", "IfElse", "LinearAlgebra", "Requires", "SparseArrays", "Static"]
-git-tree-sha1 = "e527b258413e0c6d4f66ade574744c94edef81f8"
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-version = "3.1.40"
-
-[[Artifacts]]
-uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
-
-[[Automa]]
-deps = ["Printf", "ScanByte", "TranscodingStreams"]
-git-tree-sha1 = "d50976f217489ce799e366d9561d56a98a30d7fe"
-uuid = "67c07d97-cdcb-5c2c-af73-a7f9c32a568b"
-version = "0.8.2"
-
-[[AxisAlgorithms]]
-deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"]
-git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7"
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-version = "1.0.1"
-
-[[Base64]]
-uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
-
-[[BitTwiddlingConvenienceFunctions]]
-deps = ["Static"]
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-uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b"
-version = "0.1.1"
-
-[[Bzip2_jll]]
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-
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-
-[[CFTime]]
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-
-[[CPUSummary]]
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-
-[[CSV]]
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-
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-
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-
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-
-[[CloseOpenIntervals]]
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-
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-
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-
 # ╔═╡ Cell order:
 # ╟─3e9d08f8-3ea1-11ec-262e-bb3d43960aec
 # ╟─192fc454-054c-4364-a9ed-1aa4969b612a
@@ -1795,5 +234,3 @@ version = "3.5.0+0"
 # ╟─feb874c4-80dd-444f-beb5-90b90647d44d
 # ╟─e927ba74-2c88-493e-b25b-910e23a63045
 # ╠═ef8cbf8e-3e10-4615-9640-86cb8bc68288
-# ╟─00000000-0000-0000-0000-000000000001
-# ╟─00000000-0000-0000-0000-000000000002

From f0f5a0ec33cd0c23f9f02ee20cb1cfd0862e2689 Mon Sep 17 00:00:00 2001
From: gaelforget <gforget@mit.edu>
Date: Fri, 17 Dec 2021 22:35:03 -0500
Subject: [PATCH 05/11] update example

---
 examples/basics/solid_body_rotation.jl | 853 +++++++++++++------------
 1 file changed, 435 insertions(+), 418 deletions(-)

diff --git a/examples/basics/solid_body_rotation.jl b/examples/basics/solid_body_rotation.jl
index fc837561..5991bbfa 100644
--- a/examples/basics/solid_body_rotation.jl
+++ b/examples/basics/solid_body_rotation.jl
@@ -1,5 +1,5 @@
 ### A Pluto.jl notebook ###
-# v0.17.0
+# v0.17.3
 
 using Markdown
 using InteractiveUtils
@@ -219,1559 +219,1576 @@ PlutoUI = "7f904dfe-b85e-4ff6-b463-dae2292396a8"
 
 [compat]
 CairoMakie = "~0.6.6"
-DataFrames = "~1.2.2"
-IndividualDisplacements = "~0.3.3"
-MeshArrays = "~0.2.26"
-PlutoUI = "~0.7.18"
+DataFrames = "~1.3.0"
+IndividualDisplacements = "~0.3.4"
+MeshArrays = "~0.2.30"
+PlutoUI = "~0.7.24"
 """
 
 # ╔═╡ 00000000-0000-0000-0000-000000000002
 PLUTO_MANIFEST_TOML_CONTENTS = """
 # This file is machine-generated - editing it directly is not advised
 
-[[AbstractFFTs]]
+julia_version = "1.7.0"
+manifest_format = "2.0"
+
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+[[deps.AbstractPlutoDingetjes]]
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+git-tree-sha1 = "abb72771fd8895a7ebd83d5632dc4b989b022b5b"
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+version = "1.1.2"
 
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+[[deps.AbstractTrees]]
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-[[Adapt]]
+[[deps.Adapt]]
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+[[deps.ChangesOfVariables]]
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+[[deps.Compat]]
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 uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a"
 version = "0.4.1"
 
-[[FFMPEG_jll]]
+[[deps.FFMPEG_jll]]
 deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "Pkg", "Zlib_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"]
 git-tree-sha1 = "d8a578692e3077ac998b50c0217dfd67f21d1e5f"
 uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5"
 version = "4.4.0+0"
 
-[[FFTW]]
+[[deps.FFTW]]
 deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"]
 git-tree-sha1 = "463cb335fa22c4ebacfd1faba5fde14edb80d96c"
 uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341"
 version = "1.4.5"
 
-[[FFTW_jll]]
+[[deps.FFTW_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea"
 uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a"
 version = "3.3.10+0"
 
-[[FastBroadcast]]
+[[deps.FastBroadcast]]
 deps = ["LinearAlgebra", "Polyester", "Static"]
 git-tree-sha1 = "e32a81c505ab234c992ca978f31ed8b0dabbc327"
 uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898"
 version = "0.1.11"
 
-[[FastClosures]]
+[[deps.FastClosures]]
 git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef"
 uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a"
 version = "0.3.2"
 
-[[FileIO]]
+[[deps.FileIO]]
 deps = ["Pkg", "Requires", "UUIDs"]
 git-tree-sha1 = "2db648b6712831ecb333eae76dbfd1c156ca13bb"
 uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549"
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-[[FilePathsBase]]
-deps = ["Dates", "Mmap", "Printf", "Test", "UUIDs"]
-git-tree-sha1 = "5440c1d26aa29ca9ea848559216e5ee5f16a8627"
+[[deps.FilePathsBase]]
+deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"]
+git-tree-sha1 = "04d13bfa8ef11720c24e4d840c0033d145537df7"
 uuid = "48062228-2e41-5def-b9a4-89aafe57970f"
-version = "0.9.14"
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-[[FillArrays]]
+[[deps.FillArrays]]
 deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"]
 git-tree-sha1 = "8756f9935b7ccc9064c6eef0bff0ad643df733a3"
 uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
 version = "0.12.7"
 
-[[FiniteDiff]]
+[[deps.FiniteDiff]]
 deps = ["ArrayInterface", "LinearAlgebra", "Requires", "SparseArrays", "StaticArrays"]
 git-tree-sha1 = "8b3c09b56acaf3c0e581c66638b85c8650ee9dca"
 uuid = "6a86dc24-6348-571c-b903-95158fe2bd41"
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-[[FixedPointNumbers]]
+[[deps.FixedPointNumbers]]
 deps = ["Statistics"]
 git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc"
 uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93"
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-[[Fontconfig_jll]]
+[[deps.Fontconfig_jll]]
 deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"]
 git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03"
 uuid = "a3f928ae-7b40-5064-980b-68af3947d34b"
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-[[Formatting]]
+[[deps.Formatting]]
 deps = ["Printf"]
 git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8"
 uuid = "59287772-0a20-5a39-b81b-1366585eb4c0"
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-[[ForwardDiff]]
-deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"]
-git-tree-sha1 = "ef3fec65f9db26fa2cf8f4133c697c5b7ce63c1d"
+[[deps.ForwardDiff]]
+deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"]
+git-tree-sha1 = "2b72a5624e289ee18256111657663721d59c143e"
 uuid = "f6369f11-7733-5829-9624-2563aa707210"
-version = "0.10.22"
+version = "0.10.24"
 
-[[FreeType]]
+[[deps.FreeType]]
 deps = ["CEnum", "FreeType2_jll"]
 git-tree-sha1 = "cabd77ab6a6fdff49bfd24af2ebe76e6e018a2b4"
 uuid = "b38be410-82b0-50bf-ab77-7b57e271db43"
 version = "4.0.0"
 
-[[FreeType2_jll]]
+[[deps.FreeType2_jll]]
 deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"]
 git-tree-sha1 = "87eb71354d8ec1a96d4a7636bd57a7347dde3ef9"
 uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7"
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-[[FreeTypeAbstraction]]
+[[deps.FreeTypeAbstraction]]
 deps = ["ColorVectorSpace", "Colors", "FreeType", "GeometryBasics", "StaticArrays"]
-git-tree-sha1 = "19d0f1e234c13bbfd75258e55c52aa1d876115f5"
+git-tree-sha1 = "770050893e7bc8a34915b4b9298604a3236de834"
 uuid = "663a7486-cb36-511b-a19d-713bb74d65c9"
-version = "0.9.2"
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-[[FriBidi_jll]]
+[[deps.FriBidi_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91"
 uuid = "559328eb-81f9-559d-9380-de523a88c83c"
 version = "1.0.10+0"
 
-[[FunctionWrappers]]
+[[deps.FunctionWrappers]]
 git-tree-sha1 = "241552bc2209f0fa068b6415b1942cc0aa486bcc"
 uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e"
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-[[Future]]
+[[deps.Future]]
 deps = ["Random"]
 uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820"
 
-[[GeometryBasics]]
+[[deps.GeometryBasics]]
 deps = ["EarCut_jll", "IterTools", "LinearAlgebra", "StaticArrays", "StructArrays", "Tables"]
 git-tree-sha1 = "58bcdf5ebc057b085e58d95c138725628dd7453c"
 uuid = "5c1252a2-5f33-56bf-86c9-59e7332b4326"
 version = "0.4.1"
 
-[[Gettext_jll]]
+[[deps.Gettext_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"]
 git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046"
 uuid = "78b55507-aeef-58d4-861c-77aaff3498b1"
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-[[Glib_jll]]
+[[deps.Glib_jll]]
 deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE_jll", "Pkg", "Zlib_jll"]
-git-tree-sha1 = "7bf67e9a481712b3dbe9cb3dac852dc4b1162e02"
+git-tree-sha1 = "74ef6288d071f58033d54fd6708d4bc23a8b8972"
 uuid = "7746bdde-850d-59dc-9ae8-88ece973131d"
-version = "2.68.3+0"
+version = "2.68.3+1"
 
-[[Graphics]]
+[[deps.Graphics]]
 deps = ["Colors", "LinearAlgebra", "NaNMath"]
 git-tree-sha1 = "1c5a84319923bea76fa145d49e93aa4394c73fc2"
 uuid = "a2bd30eb-e257-5431-a919-1863eab51364"
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-[[Graphite2_jll]]
+[[deps.Graphite2_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011"
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-[[GridLayoutBase]]
-deps = ["GeometryBasics", "InteractiveUtils", "Match", "Observables"]
-git-tree-sha1 = "e2f606c87d09d5187bb6069dab8cee0af7c77bdb"
+[[deps.Graphs]]
+deps = ["ArnoldiMethod", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"]
+git-tree-sha1 = "92243c07e786ea3458532e199eb3feee0e7e08eb"
+uuid = "86223c79-3864-5bf0-83f7-82e725a168b6"
+version = "1.4.1"
+
+[[deps.GridLayoutBase]]
+deps = ["GeometryBasics", "InteractiveUtils", "Observables"]
+git-tree-sha1 = "70938436e2720e6cb8a7f2ca9f1bbdbf40d7f5d0"
 uuid = "3955a311-db13-416c-9275-1d80ed98e5e9"
-version = "0.6.1"
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-[[Grisu]]
+[[deps.Grisu]]
 git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2"
 uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe"
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-[[HDF5_jll]]
+[[deps.HDF5_jll]]
 deps = ["Artifacts", "JLLWrappers", "LibCURL_jll", "Libdl", "OpenSSL_jll", "Pkg", "Zlib_jll"]
 git-tree-sha1 = "fd83fa0bde42e01952757f01149dd968c06c4dba"
 uuid = "0234f1f7-429e-5d53-9886-15a909be8d59"
 version = "1.12.0+1"
 
-[[HarfBuzz_jll]]
+[[deps.HarfBuzz_jll]]
 deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"]
-git-tree-sha1 = "8a954fed8ac097d5be04921d595f741115c1b2ad"
+git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3"
 uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566"
-version = "2.8.1+0"
+version = "2.8.1+1"
 
-[[HostCPUFeatures]]
+[[deps.HostCPUFeatures]]
 deps = ["BitTwiddlingConvenienceFunctions", "IfElse", "Libdl", "Static"]
 git-tree-sha1 = "8f0dc80088981ab55702b04bba38097a44a1a3a9"
 uuid = "3e5b6fbb-0976-4d2c-9146-d79de83f2fb0"
 version = "0.1.5"
 
-[[Hwloc]]
+[[deps.Hwloc]]
 deps = ["Hwloc_jll"]
 git-tree-sha1 = "92d99146066c5c6888d5a3abc871e6a214388b91"
 uuid = "0e44f5e4-bd66-52a0-8798-143a42290a1d"
 version = "2.0.0"
 
-[[Hwloc_jll]]
+[[deps.Hwloc_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "3395d4d4aeb3c9d31f5929d32760d8baeee88aaf"
 uuid = "e33a78d0-f292-5ffc-b300-72abe9b543c8"
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-[[Hyperscript]]
+[[deps.Hyperscript]]
 deps = ["Test"]
 git-tree-sha1 = "8d511d5b81240fc8e6802386302675bdf47737b9"
 uuid = "47d2ed2b-36de-50cf-bf87-49c2cf4b8b91"
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-[[HypertextLiteral]]
+[[deps.HypertextLiteral]]
 git-tree-sha1 = "2b078b5a615c6c0396c77810d92ee8c6f470d238"
 uuid = "ac1192a8-f4b3-4bfe-ba22-af5b92cd3ab2"
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-[[IOCapture]]
+[[deps.IOCapture]]
 deps = ["Logging", "Random"]
 git-tree-sha1 = "f7be53659ab06ddc986428d3a9dcc95f6fa6705a"
 uuid = "b5f81e59-6552-4d32-b1f0-c071b021bf89"
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-[[IfElse]]
+[[deps.IfElse]]
 git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1"
 uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173"
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-[[ImageCore]]
+[[deps.ImageCore]]
 deps = ["AbstractFFTs", "ColorVectorSpace", "Colors", "FixedPointNumbers", "Graphics", "MappedArrays", "MosaicViews", "OffsetArrays", "PaddedViews", "Reexport"]
 git-tree-sha1 = "9a5c62f231e5bba35695a20988fc7cd6de7eeb5a"
 uuid = "a09fc81d-aa75-5fe9-8630-4744c3626534"
 version = "0.9.3"
 
-[[ImageIO]]
+[[deps.ImageIO]]
 deps = ["FileIO", "Netpbm", "OpenEXR", "PNGFiles", "TiffImages", "UUIDs"]
 git-tree-sha1 = "a2951c93684551467265e0e32b577914f69532be"
 uuid = "82e4d734-157c-48bb-816b-45c225c6df19"
 version = "0.5.9"
 
-[[Imath_jll]]
+[[deps.Imath_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "87f7662e03a649cffa2e05bf19c303e168732d3e"
 uuid = "905a6f67-0a94-5f89-b386-d35d92009cd1"
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-[[IndirectArrays]]
+[[deps.IndirectArrays]]
 git-tree-sha1 = "012e604e1c7458645cb8b436f8fba789a51b257f"
 uuid = "9b13fd28-a010-5f03-acff-a1bbcff69959"
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-[[IndividualDisplacements]]
-deps = ["CFTime", "CSV", "CyclicArrays", "DataFrames", "Dates", "MeshArrays", "NetCDF", "OrdinaryDiffEq", "Pkg", "Random", "UnPack"]
-git-tree-sha1 = "3ebe0723d67f2c2a608542d6db654c2504426d1a"
+[[deps.IndividualDisplacements]]
+deps = ["CFTime", "CSV", "CyclicArrays", "DataFrames", "Dates", "LazyArtifacts", "MeshArrays", "NetCDF", "OrdinaryDiffEq", "Random", "UnPack"]
+git-tree-sha1 = "44e2c7267ff299fa4c8de4abf3f7cfb7d36eb402"
 uuid = "b92f0c32-5b7e-11e9-1d7b-238b2da8b0e6"
-version = "0.3.3"
+version = "0.3.4"
 
-[[Inflate]]
+[[deps.Inflate]]
 git-tree-sha1 = "f5fc07d4e706b84f72d54eedcc1c13d92fb0871c"
 uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9"
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-[[InlineStrings]]
+[[deps.InlineStrings]]
 deps = ["Parsers"]
-git-tree-sha1 = "19cb49649f8c41de7fea32d089d37de917b553da"
+git-tree-sha1 = "8d70835a3759cdd75881426fced1508bb7b7e1b6"
 uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48"
-version = "1.0.1"
+version = "1.1.1"
 
-[[IntelOpenMP_jll]]
+[[deps.IntelOpenMP_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "d979e54b71da82f3a65b62553da4fc3d18c9004c"
 uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0"
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-[[InteractiveUtils]]
+[[deps.InteractiveUtils]]
 deps = ["Markdown"]
 uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
 
-[[Interpolations]]
+[[deps.Interpolations]]
 deps = ["AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"]
-git-tree-sha1 = "61aa005707ea2cebf47c8d780da8dc9bc4e0c512"
+git-tree-sha1 = "b15fc0a95c564ca2e0a7ae12c1f095ca848ceb31"
 uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59"
-version = "0.13.4"
+version = "0.13.5"
 
-[[IntervalSets]]
+[[deps.IntervalSets]]
 deps = ["Dates", "EllipsisNotation", "Statistics"]
 git-tree-sha1 = "3cc368af3f110a767ac786560045dceddfc16758"
 uuid = "8197267c-284f-5f27-9208-e0e47529a953"
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-[[InverseFunctions]]
+[[deps.InverseFunctions]]
 deps = ["Test"]
 git-tree-sha1 = "a7254c0acd8e62f1ac75ad24d5db43f5f19f3c65"
 uuid = "3587e190-3f89-42d0-90ee-14403ec27112"
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-[[InvertedIndices]]
+[[deps.InvertedIndices]]
 git-tree-sha1 = "bee5f1ef5bf65df56bdd2e40447590b272a5471f"
 uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f"
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-[[IrrationalConstants]]
+[[deps.IrrationalConstants]]
 git-tree-sha1 = "7fd44fd4ff43fc60815f8e764c0f352b83c49151"
 uuid = "92d709cd-6900-40b7-9082-c6be49f344b6"
 version = "0.1.1"
 
-[[Isoband]]
+[[deps.Isoband]]
 deps = ["isoband_jll"]
 git-tree-sha1 = "f9b6d97355599074dc867318950adaa6f9946137"
 uuid = "f1662d9f-8043-43de-a69a-05efc1cc6ff4"
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-[[IterTools]]
-git-tree-sha1 = "05110a2ab1fc5f932622ffea2a003221f4782c18"
+[[deps.IterTools]]
+git-tree-sha1 = "fa6287a4469f5e048d763df38279ee729fbd44e5"
 uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e"
-version = "1.3.0"
+version = "1.4.0"
 
-[[IterativeSolvers]]
+[[deps.IterativeSolvers]]
 deps = ["LinearAlgebra", "Printf", "Random", "RecipesBase", "SparseArrays"]
 git-tree-sha1 = "1169632f425f79429f245113b775a0e3d121457c"
 uuid = "42fd0dbc-a981-5370-80f2-aaf504508153"
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-[[IteratorInterfaceExtensions]]
+[[deps.IteratorInterfaceExtensions]]
 git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856"
 uuid = "82899510-4779-5014-852e-03e436cf321d"
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-[[JLLWrappers]]
+[[deps.JLLWrappers]]
 deps = ["Preferences"]
 git-tree-sha1 = "642a199af8b68253517b80bd3bfd17eb4e84df6e"
 uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210"
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-[[JSON]]
+[[deps.JSON]]
 deps = ["Dates", "Mmap", "Parsers", "Unicode"]
 git-tree-sha1 = "8076680b162ada2a031f707ac7b4953e30667a37"
 uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6"
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-[[KernelDensity]]
+[[deps.KernelDensity]]
 deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"]
 git-tree-sha1 = "591e8dc09ad18386189610acafb970032c519707"
 uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b"
 version = "0.6.3"
 
-[[LAME_jll]]
+[[deps.LAME_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c"
 uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d"
 version = "3.100.1+0"
 
-[[LZO_jll]]
+[[deps.LZO_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6"
 uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac"
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-[[LaTeXStrings]]
+[[deps.LaTeXStrings]]
 git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996"
 uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f"
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-[[LabelledArrays]]
-deps = ["ArrayInterface", "LinearAlgebra", "MacroTools", "StaticArrays"]
-git-tree-sha1 = "8f5fd068dfee92655b79e0859ecad8b492dfe8b1"
+[[deps.LabelledArrays]]
+deps = ["ArrayInterface", "ChainRulesCore", "LinearAlgebra", "MacroTools", "StaticArrays"]
+git-tree-sha1 = "3609bbf5feba7b22fb35fe7cb207c8c8d2e2fc5b"
 uuid = "2ee39098-c373-598a-b85f-a56591580800"
-version = "1.6.5"
+version = "1.6.7"
 
-[[LayoutPointers]]
+[[deps.LayoutPointers]]
 deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static"]
 git-tree-sha1 = "83b56449c39342a47f3fcdb3bc782bd6d66e1d97"
 uuid = "10f19ff3-798f-405d-979b-55457f8fc047"
 version = "0.1.4"
 
-[[LazyArtifacts]]
+[[deps.LazyArtifacts]]
 deps = ["Artifacts", "Pkg"]
 uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3"
 
-[[LibCURL]]
+[[deps.LibCURL]]
 deps = ["LibCURL_jll", "MozillaCACerts_jll"]
 uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21"
 
-[[LibCURL_jll]]
+[[deps.LibCURL_jll]]
 deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"]
 uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0"
 
-[[LibGit2]]
+[[deps.LibGit2]]
 deps = ["Base64", "NetworkOptions", "Printf", "SHA"]
 uuid = "76f85450-5226-5b5a-8eaa-529ad045b433"
 
-[[LibSSH2_jll]]
+[[deps.LibSSH2_jll]]
 deps = ["Artifacts", "Libdl", "MbedTLS_jll"]
 uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8"
 
-[[Libdl]]
+[[deps.Libdl]]
 uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
 
-[[Libffi_jll]]
+[[deps.Libffi_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "761a393aeccd6aa92ec3515e428c26bf99575b3b"
+git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290"
 uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490"
-version = "3.2.2+0"
+version = "3.2.2+1"
 
-[[Libgcrypt_jll]]
+[[deps.Libgcrypt_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"]
 git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae"
 uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4"
 version = "1.8.7+0"
 
-[[Libgpg_error_jll]]
+[[deps.Libgpg_error_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9"
 uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8"
 version = "1.42.0+0"
 
-[[Libiconv_jll]]
+[[deps.Libiconv_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "42b62845d70a619f063a7da093d995ec8e15e778"
 uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531"
 version = "1.16.1+1"
 
-[[Libmount_jll]]
+[[deps.Libmount_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73"
 uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9"
 version = "2.35.0+0"
 
-[[Libuuid_jll]]
+[[deps.Libuuid_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066"
 uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700"
 version = "2.36.0+0"
 
-[[LightGraphs]]
-deps = ["ArnoldiMethod", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"]
-git-tree-sha1 = "432428df5f360964040ed60418dd5601ecd240b6"
-uuid = "093fc24a-ae57-5d10-9952-331d41423f4d"
-version = "1.3.5"
-
-[[LineSearches]]
+[[deps.LineSearches]]
 deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"]
 git-tree-sha1 = "f27132e551e959b3667d8c93eae90973225032dd"
 uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255"
 version = "7.1.1"
 
-[[LinearAlgebra]]
-deps = ["Libdl"]
+[[deps.LinearAlgebra]]
+deps = ["Libdl", "libblastrampoline_jll"]
 uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 
-[[LogExpFunctions]]
+[[deps.LogExpFunctions]]
 deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"]
-git-tree-sha1 = "be9eef9f9d78cecb6f262f3c10da151a6c5ab827"
+git-tree-sha1 = "e5718a00af0ab9756305a0392832c8952c7426c1"
 uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688"
-version = "0.3.5"
+version = "0.3.6"
 
-[[Logging]]
+[[deps.Logging]]
 uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
 
-[[LoopVectorization]]
+[[deps.LoopVectorization]]
 deps = ["ArrayInterface", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "Requires", "SIMDDualNumbers", "SLEEFPirates", "Static", "ThreadingUtilities", "UnPack", "VectorizationBase"]
-git-tree-sha1 = "caaa2d3518fe6312327819cdd485a4258e52ece0"
+git-tree-sha1 = "9e10579c154f785b911d9ceb96c33fcc1a661171"
 uuid = "bdcacae8-1622-11e9-2a5c-532679323890"
-version = "0.12.95"
+version = "0.12.99"
 
-[[MKL_jll]]
+[[deps.MKL_jll]]
 deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"]
 git-tree-sha1 = "5455aef09b40e5020e1520f551fa3135040d4ed0"
 uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7"
 version = "2021.1.1+2"
 
-[[MacroTools]]
+[[deps.MacroTools]]
 deps = ["Markdown", "Random"]
 git-tree-sha1 = "3d3e902b31198a27340d0bf00d6ac452866021cf"
 uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
 version = "0.5.9"
 
-[[Makie]]
+[[deps.Makie]]
 deps = ["Animations", "Base64", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "Distributions", "DocStringExtensions", "FFMPEG", "FileIO", "FixedPointNumbers", "Formatting", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageIO", "IntervalSets", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MakieCore", "Markdown", "Match", "MathTeXEngine", "Observables", "Packing", "PlotUtils", "PolygonOps", "Printf", "Random", "RelocatableFolders", "Serialization", "Showoff", "SignedDistanceFields", "SparseArrays", "StaticArrays", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "UnicodeFun"]
 git-tree-sha1 = "56b0b7772676c499430dc8eb15cfab120c05a150"
 uuid = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a"
 version = "0.15.3"
 
-[[MakieCore]]
+[[deps.MakieCore]]
 deps = ["Observables"]
 git-tree-sha1 = "7bcc8323fb37523a6a51ade2234eee27a11114c8"
 uuid = "20f20a25-4f0e-4fdf-b5d1-57303727442b"
 version = "0.1.3"
 
-[[ManualMemory]]
+[[deps.ManualMemory]]
 git-tree-sha1 = "9cb207b18148b2199db259adfa923b45593fe08e"
 uuid = "d125e4d3-2237-4719-b19c-fa641b8a4667"
 version = "0.1.6"
 
-[[MappedArrays]]
+[[deps.MappedArrays]]
 git-tree-sha1 = "e8b359ef06ec72e8c030463fe02efe5527ee5142"
 uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900"
 version = "0.4.1"
 
-[[Markdown]]
+[[deps.Markdown]]
 deps = ["Base64"]
 uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
 
-[[Match]]
-git-tree-sha1 = "5cf525d97caf86d29307150fcba763a64eaa9cbe"
+[[deps.Match]]
+git-tree-sha1 = "1d9bc5c1a6e7ee24effb93f175c9342f9154d97f"
 uuid = "7eb4fadd-790c-5f42-8a69-bfa0b872bfbf"
-version = "1.1.0"
+version = "1.2.0"
 
-[[MathTeXEngine]]
+[[deps.MathTeXEngine]]
 deps = ["AbstractTrees", "Automa", "DataStructures", "FreeTypeAbstraction", "GeometryBasics", "LaTeXStrings", "REPL", "RelocatableFolders", "Test"]
 git-tree-sha1 = "70e733037bbf02d691e78f95171a1fa08cdc6332"
 uuid = "0a4f8689-d25c-4efe-a92b-7142dfc1aa53"
 version = "0.2.1"
 
-[[MbedTLS_jll]]
+[[deps.MbedTLS_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1"
 
-[[MeshArrays]]
+[[deps.MeshArrays]]
 deps = ["CatViews", "Dates", "LazyArtifacts", "NearestNeighbors", "Pkg", "Printf", "SparseArrays", "Statistics", "Unitful"]
-git-tree-sha1 = "628c1e1ee3b69635027a76f208e2e76541cd1162"
+git-tree-sha1 = "16e380436a558bb4db8bf8ce493df7101feca661"
 uuid = "cb8c808f-1acf-59a3-9d2b-6e38d009f683"
-version = "0.2.26"
+version = "0.2.30"
 
-[[Missings]]
+[[deps.Missings]]
 deps = ["DataAPI"]
 git-tree-sha1 = "bf210ce90b6c9eed32d25dbcae1ebc565df2687f"
 uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28"
 version = "1.0.2"
 
-[[Mmap]]
+[[deps.Mmap]]
 uuid = "a63ad114-7e13-5084-954f-fe012c677804"
 
-[[MosaicViews]]
+[[deps.MosaicViews]]
 deps = ["MappedArrays", "OffsetArrays", "PaddedViews", "StackViews"]
 git-tree-sha1 = "b34e3bc3ca7c94914418637cb10cc4d1d80d877d"
 uuid = "e94cdb99-869f-56ef-bcf0-1ae2bcbe0389"
 version = "0.3.3"
 
-[[MozillaCACerts_jll]]
+[[deps.MozillaCACerts_jll]]
 uuid = "14a3606d-f60d-562e-9121-12d972cd8159"
 
-[[MuladdMacro]]
+[[deps.MuladdMacro]]
 git-tree-sha1 = "c6190f9a7fc5d9d5915ab29f2134421b12d24a68"
 uuid = "46d2c3a1-f734-5fdb-9937-b9b9aeba4221"
 version = "0.2.2"
 
-[[NLSolversBase]]
+[[deps.NLSolversBase]]
 deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"]
 git-tree-sha1 = "50310f934e55e5ca3912fb941dec199b49ca9b68"
 uuid = "d41bc354-129a-5804-8e4c-c37616107c6c"
 version = "7.8.2"
 
-[[NLsolve]]
+[[deps.NLsolve]]
 deps = ["Distances", "LineSearches", "LinearAlgebra", "NLSolversBase", "Printf", "Reexport"]
 git-tree-sha1 = "019f12e9a1a7880459d0173c182e6a99365d7ac1"
 uuid = "2774e3e8-f4cf-5e23-947b-6d7e65073b56"
 version = "4.5.1"
 
-[[NaNMath]]
-git-tree-sha1 = "bfe47e760d60b82b66b61d2d44128b62e3a369fb"
+[[deps.NaNMath]]
+git-tree-sha1 = "f755f36b19a5116bb580de457cda0c140153f283"
 uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3"
-version = "0.3.5"
+version = "0.3.6"
 
-[[NearestNeighbors]]
+[[deps.NearestNeighbors]]
 deps = ["Distances", "StaticArrays"]
 git-tree-sha1 = "16baacfdc8758bc374882566c9187e785e85c2f0"
 uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce"
 version = "0.4.9"
 
-[[NetCDF]]
+[[deps.NetCDF]]
 deps = ["DiskArrays", "Formatting", "NetCDF_jll"]
 git-tree-sha1 = "23b0e32fde256a4e2e497e678abcf956ed26204b"
 uuid = "30363a11-5582-574a-97bb-aa9a979735b9"
 version = "0.11.3"
 
-[[NetCDF_jll]]
+[[deps.NetCDF_jll]]
 deps = ["Artifacts", "HDF5_jll", "JLLWrappers", "LibCURL_jll", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Pkg", "Zlib_jll", "nghttp2_jll"]
 git-tree-sha1 = "0cf4d1bf2ef45156aed85c9ac5f8c7e697d9288c"
 uuid = "7243133f-43d8-5620-bbf4-c2c921802cf3"
 version = "400.702.400+0"
 
-[[Netpbm]]
+[[deps.Netpbm]]
 deps = ["FileIO", "ImageCore"]
 git-tree-sha1 = "18efc06f6ec36a8b801b23f076e3c6ac7c3bf153"
 uuid = "f09324ee-3d7c-5217-9330-fc30815ba969"
 version = "1.0.2"
 
-[[NetworkOptions]]
+[[deps.NetworkOptions]]
 uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
 
-[[NonlinearSolve]]
+[[deps.NonlinearSolve]]
 deps = ["ArrayInterface", "FiniteDiff", "ForwardDiff", "IterativeSolvers", "LinearAlgebra", "RecursiveArrayTools", "RecursiveFactorization", "Reexport", "SciMLBase", "Setfield", "StaticArrays", "UnPack"]
-git-tree-sha1 = "e9ffc92217b8709e0cf7b8808f6223a4a0936c95"
+git-tree-sha1 = "8dc3be3e9edf976a3e79363b3bd2ad776a627c31"
 uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec"
-version = "0.3.11"
+version = "0.3.12"
 
-[[Observables]]
+[[deps.Observables]]
 git-tree-sha1 = "fe29afdef3d0c4a8286128d4e45cc50621b1e43d"
 uuid = "510215fc-4207-5dde-b226-833fc4488ee2"
 version = "0.4.0"
 
-[[OffsetArrays]]
+[[deps.OffsetArrays]]
 deps = ["Adapt"]
 git-tree-sha1 = "043017e0bdeff61cfbb7afeb558ab29536bbb5ed"
 uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881"
 version = "1.10.8"
 
-[[Ogg_jll]]
+[[deps.Ogg_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "7937eda4681660b4d6aeeecc2f7e1c81c8ee4e2f"
 uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051"
 version = "1.3.5+0"
 
-[[OpenEXR]]
+[[deps.OpenBLAS_jll]]
+deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"]
+uuid = "4536629a-c528-5b80-bd46-f80d51c5b363"
+
+[[deps.OpenEXR]]
 deps = ["Colors", "FileIO", "OpenEXR_jll"]
 git-tree-sha1 = "327f53360fdb54df7ecd01e96ef1983536d1e633"
 uuid = "52e1d378-f018-4a11-a4be-720524705ac7"
 version = "0.3.2"
 
-[[OpenEXR_jll]]
+[[deps.OpenEXR_jll]]
 deps = ["Artifacts", "Imath_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"]
 git-tree-sha1 = "923319661e9a22712f24596ce81c54fc0366f304"
 uuid = "18a262bb-aa17-5467-a713-aee519bc75cb"
 version = "3.1.1+0"
 
-[[OpenLibm_jll]]
+[[deps.OpenLibm_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "05823500-19ac-5b8b-9628-191a04bc5112"
 
-[[OpenSSL_jll]]
+[[deps.OpenSSL_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "15003dcb7d8db3c6c857fda14891a539a8f2705a"
 uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95"
 version = "1.1.10+0"
 
-[[OpenSpecFun_jll]]
+[[deps.OpenSpecFun_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1"
 uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e"
 version = "0.5.5+0"
 
-[[Opus_jll]]
+[[deps.Opus_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720"
 uuid = "91d4177d-7536-5919-b921-800302f37372"
 version = "1.3.2+0"
 
-[[OrderedCollections]]
+[[deps.OrderedCollections]]
 git-tree-sha1 = "85f8e6578bf1f9ee0d11e7bb1b1456435479d47c"
 uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
 version = "1.4.1"
 
-[[OrdinaryDiffEq]]
+[[deps.OrdinaryDiffEq]]
 deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastClosures", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "Polyester", "PreallocationTools", "RecursiveArrayTools", "Reexport", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"]
-git-tree-sha1 = "6f76c887ddfd3f2a018ef1ee00a17b46bcf4886e"
+git-tree-sha1 = "aab86872f5dccb1a6251ae7935b286e784dadba0"
 uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
-version = "5.67.0"
+version = "5.71.0"
 
-[[PCRE_jll]]
+[[deps.PCRE_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "b2a7af664e098055a7529ad1a900ded962bca488"
 uuid = "2f80f16e-611a-54ab-bc61-aa92de5b98fc"
 version = "8.44.0+0"
 
-[[PDMats]]
+[[deps.PDMats]]
 deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
-git-tree-sha1 = "c8b8775b2f242c80ea85c83714c64ecfa3c53355"
+git-tree-sha1 = "ee26b350276c51697c9c2d88a072b339f9f03d73"
 uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
-version = "0.11.3"
+version = "0.11.5"
 
-[[PNGFiles]]
+[[deps.PNGFiles]]
 deps = ["Base64", "CEnum", "ImageCore", "IndirectArrays", "OffsetArrays", "libpng_jll"]
 git-tree-sha1 = "6d105d40e30b635cfed9d52ec29cf456e27d38f8"
 uuid = "f57f5aa1-a3ce-4bc8-8ab9-96f992907883"
 version = "0.3.12"
 
-[[Packing]]
+[[deps.Packing]]
 deps = ["GeometryBasics"]
 git-tree-sha1 = "1155f6f937fa2b94104162f01fa400e192e4272f"
 uuid = "19eb6ba3-879d-56ad-ad62-d5c202156566"
 version = "0.4.2"
 
-[[PaddedViews]]
+[[deps.PaddedViews]]
 deps = ["OffsetArrays"]
 git-tree-sha1 = "646eed6f6a5d8df6708f15ea7e02a7a2c4fe4800"
 uuid = "5432bcbf-9aad-5242-b902-cca2824c8663"
 version = "0.5.10"
 
-[[Pango_jll]]
+[[deps.Pango_jll]]
 deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "9bc1871464b12ed19297fbc56c4fb4ba84988b0d"
 uuid = "36c8627f-9965-5494-a995-c6b170f724f3"
 version = "1.47.0+0"
 
-[[Parameters]]
+[[deps.Parameters]]
 deps = ["OrderedCollections", "UnPack"]
 git-tree-sha1 = "34c0e9ad262e5f7fc75b10a9952ca7692cfc5fbe"
 uuid = "d96e819e-fc66-5662-9728-84c9c7592b0a"
 version = "0.12.3"
 
-[[Parsers]]
+[[deps.Parsers]]
 deps = ["Dates"]
-git-tree-sha1 = "ae4bbcadb2906ccc085cf52ac286dc1377dceccc"
+git-tree-sha1 = "d7fa6237da8004be601e19bd6666083056649918"
 uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
-version = "2.1.2"
+version = "2.1.3"
 
-[[Pixman_jll]]
+[[deps.Pixman_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "b4f5d02549a10e20780a24fce72bea96b6329e29"
 uuid = "30392449-352a-5448-841d-b1acce4e97dc"
 version = "0.40.1+0"
 
-[[Pkg]]
+[[deps.Pkg]]
 deps = ["Artifacts", "Dates", "Downloads", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"]
 uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
 
-[[PkgVersion]]
+[[deps.PkgVersion]]
 deps = ["Pkg"]
 git-tree-sha1 = "a7a7e1a88853564e551e4eba8650f8c38df79b37"
 uuid = "eebad327-c553-4316-9ea0-9fa01ccd7688"
 version = "0.1.1"
 
-[[PlotUtils]]
+[[deps.PlotUtils]]
 deps = ["ColorSchemes", "Colors", "Dates", "Printf", "Random", "Reexport", "Statistics"]
-git-tree-sha1 = "b084324b4af5a438cd63619fd006614b3b20b87b"
+git-tree-sha1 = "e4fe0b50af3130ddd25e793b471cb43d5279e3e6"
 uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043"
-version = "1.0.15"
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-[[PlutoUI]]
-deps = ["AbstractPlutoDingetjes", "Base64", "Dates", "Hyperscript", "HypertextLiteral", "IOCapture", "InteractiveUtils", "JSON", "Logging", "Markdown", "Random", "Reexport", "UUIDs"]
-git-tree-sha1 = "57312c7ecad39566319ccf5aa717a20788eb8c1f"
+[[deps.PlutoUI]]
+deps = ["AbstractPlutoDingetjes", "Base64", "ColorTypes", "Dates", "Hyperscript", "HypertextLiteral", "IOCapture", "InteractiveUtils", "JSON", "Logging", "Markdown", "Random", "Reexport", "UUIDs"]
+git-tree-sha1 = "6c9fa3e4880242c666dafa4901a34d8e1cd1b243"
 uuid = "7f904dfe-b85e-4ff6-b463-dae2292396a8"
-version = "0.7.18"
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-[[Polyester]]
+[[deps.Polyester]]
 deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StrideArraysCore", "ThreadingUtilities"]
 git-tree-sha1 = "892b8d9dd3c7987a4d0fd320f0a421dd90b5d09d"
 uuid = "f517fe37-dbe3-4b94-8317-1923a5111588"
 version = "0.5.4"
 
-[[PolyesterWeave]]
+[[deps.PolyesterWeave]]
 deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"]
 git-tree-sha1 = "a3ff99bf561183ee20386aec98ab8f4a12dc724a"
 uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad"
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-[[PolygonOps]]
+[[deps.PolygonOps]]
 git-tree-sha1 = "77b3d3605fc1cd0b42d95eba87dfcd2bf67d5ff6"
 uuid = "647866c9-e3ac-4575-94e7-e3d426903924"
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-[[PooledArrays]]
+[[deps.PooledArrays]]
 deps = ["DataAPI", "Future"]
-git-tree-sha1 = "a193d6ad9c45ada72c14b731a318bedd3c2f00cf"
+git-tree-sha1 = "db3a23166af8aebf4db5ef87ac5b00d36eb771e2"
 uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720"
-version = "1.3.0"
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-[[PreallocationTools]]
+[[deps.PreallocationTools]]
 deps = ["Adapt", "ArrayInterface", "ForwardDiff", "LabelledArrays"]
-git-tree-sha1 = "ba819074442cd4c9bda1a3d905ec305f8acb37f2"
+git-tree-sha1 = "435379f01c1e6f7ca65cf46fdd403226f1d36e37"
 uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46"
-version = "0.2.0"
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-[[Preferences]]
+[[deps.Preferences]]
 deps = ["TOML"]
 git-tree-sha1 = "00cfd92944ca9c760982747e9a1d0d5d86ab1e5a"
 uuid = "21216c6a-2e73-6563-6e65-726566657250"
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-[[PrettyTables]]
+[[deps.PrettyTables]]
 deps = ["Crayons", "Formatting", "Markdown", "Reexport", "Tables"]
 git-tree-sha1 = "d940010be611ee9d67064fe559edbb305f8cc0eb"
 uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d"
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-[[Printf]]
+[[deps.Printf]]
 deps = ["Unicode"]
 uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7"
 
-[[ProgressMeter]]
+[[deps.ProgressMeter]]
 deps = ["Distributed", "Printf"]
 git-tree-sha1 = "afadeba63d90ff223a6a48d2009434ecee2ec9e8"
 uuid = "92933f4c-e287-5a05-a399-4b506db050ca"
 version = "1.7.1"
 
-[[QuadGK]]
+[[deps.QuadGK]]
 deps = ["DataStructures", "LinearAlgebra"]
 git-tree-sha1 = "78aadffb3efd2155af139781b8a8df1ef279ea39"
 uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc"
 version = "2.4.2"
 
-[[REPL]]
+[[deps.REPL]]
 deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"]
 uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
 
-[[Random]]
-deps = ["Serialization"]
+[[deps.Random]]
+deps = ["SHA", "Serialization"]
 uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
 
-[[Ratios]]
+[[deps.Ratios]]
 deps = ["Requires"]
 git-tree-sha1 = "01d341f502250e81f6fec0afe662aa861392a3aa"
 uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439"
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-[[RecipesBase]]
-git-tree-sha1 = "44a75aa7a527910ee3d1751d1f0e4148698add9e"
+[[deps.RecipesBase]]
+git-tree-sha1 = "6bf3f380ff52ce0832ddd3a2a7b9538ed1bcca7d"
 uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01"
-version = "1.1.2"
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-[[RecursiveArrayTools]]
+[[deps.RecursiveArrayTools]]
 deps = ["ArrayInterface", "ChainRulesCore", "DocStringExtensions", "FillArrays", "LinearAlgebra", "RecipesBase", "Requires", "StaticArrays", "Statistics", "ZygoteRules"]
 git-tree-sha1 = "c944fa4adbb47be43376359811c0a14757bdc8a8"
 uuid = "731186ca-8d62-57ce-b412-fbd966d074cd"
 version = "2.20.0"
 
-[[RecursiveFactorization]]
+[[deps.RecursiveFactorization]]
 deps = ["LinearAlgebra", "LoopVectorization", "Polyester", "StrideArraysCore", "TriangularSolve"]
 git-tree-sha1 = "b7edd69c796b30985ea6dfeda8504cdb7cf77e9f"
 uuid = "f2c3362d-daeb-58d1-803e-2bc74f2840b4"
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-[[Reexport]]
+[[deps.Reexport]]
 git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b"
 uuid = "189a3867-3050-52da-a836-e630ba90ab69"
 version = "1.2.2"
 
-[[RelocatableFolders]]
+[[deps.RelocatableFolders]]
 deps = ["SHA", "Scratch"]
 git-tree-sha1 = "cdbd3b1338c72ce29d9584fdbe9e9b70eeb5adca"
 uuid = "05181044-ff0b-4ac5-8273-598c1e38db00"
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-[[Requires]]
+[[deps.Requires]]
 deps = ["UUIDs"]
-git-tree-sha1 = "4036a3bd08ac7e968e27c203d45f5fff15020621"
+git-tree-sha1 = "8f82019e525f4d5c669692772a6f4b0a58b06a6a"
 uuid = "ae029012-a4dd-5104-9daa-d747884805df"
-version = "1.1.3"
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-[[Rmath]]
+[[deps.Rmath]]
 deps = ["Random", "Rmath_jll"]
 git-tree-sha1 = "bf3188feca147ce108c76ad82c2792c57abe7b1f"
 uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa"
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-[[Rmath_jll]]
+[[deps.Rmath_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "68db32dff12bb6127bac73c209881191bf0efbb7"
 uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f"
 version = "0.3.0+0"
 
-[[SHA]]
+[[deps.SHA]]
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-[[SIMD]]
+[[deps.SIMD]]
 git-tree-sha1 = "9ba33637b24341aba594a2783a502760aa0bff04"
 uuid = "fdea26ae-647d-5447-a871-4b548cad5224"
 version = "3.3.1"
 
-[[SIMDDualNumbers]]
+[[deps.SIMDDualNumbers]]
 deps = ["ForwardDiff", "IfElse", "SLEEFPirates", "VectorizationBase"]
 git-tree-sha1 = "62c2da6eb66de8bb88081d20528647140d4daa0e"
 uuid = "3cdde19b-5bb0-4aaf-8931-af3e248e098b"
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-[[SIMDTypes]]
+[[deps.SIMDTypes]]
 git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c"
 uuid = "94e857df-77ce-4151-89e5-788b33177be4"
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-[[SLEEFPirates]]
+[[deps.SLEEFPirates]]
 deps = ["IfElse", "Static", "VectorizationBase"]
 git-tree-sha1 = "1410aad1c6b35862573c01b96cd1f6dbe3979994"
 uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa"
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-[[ScanByte]]
+[[deps.ScanByte]]
 deps = ["Libdl", "SIMD"]
 git-tree-sha1 = "9cc2955f2a254b18be655a4ee70bc4031b2b189e"
 uuid = "7b38b023-a4d7-4c5e-8d43-3f3097f304eb"
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-[[SciMLBase]]
+[[deps.SciMLBase]]
 deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "RecipesBase", "RecursiveArrayTools", "StaticArrays", "Statistics", "Tables", "TreeViews"]
-git-tree-sha1 = "ad2c7f08e332cc3bb05d33026b71fa0ef66c009a"
+git-tree-sha1 = "6f3c31990f63ac67ff6a485ccf77c5d8f7257547"
 uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
-version = "1.19.4"
+version = "1.23.1"
 
-[[Scratch]]
+[[deps.Scratch]]
 deps = ["Dates"]
 git-tree-sha1 = "0b4b7f1393cff97c33891da2a0bf69c6ed241fda"
 uuid = "6c6a2e73-6563-6170-7368-637461726353"
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-[[SentinelArrays]]
+[[deps.SentinelArrays]]
 deps = ["Dates", "Random"]
-git-tree-sha1 = "f45b34656397a1f6e729901dc9ef679610bd12b5"
+git-tree-sha1 = "244586bc07462d22aed0113af9c731f2a518c93e"
 uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c"
-version = "1.3.8"
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-[[Serialization]]
+[[deps.Serialization]]
 uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
 
-[[Setfield]]
+[[deps.Setfield]]
 deps = ["ConstructionBase", "Future", "MacroTools", "Requires"]
-git-tree-sha1 = "def0718ddbabeb5476e51e5a43609bee889f285d"
+git-tree-sha1 = "0afd9e6c623e379f593da01f20590bacc26d1d14"
 uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46"
-version = "0.8.0"
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-[[SharedArrays]]
+[[deps.SharedArrays]]
 deps = ["Distributed", "Mmap", "Random", "Serialization"]
 uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383"
 
-[[Showoff]]
+[[deps.Showoff]]
 deps = ["Dates", "Grisu"]
 git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de"
 uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f"
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-[[SignedDistanceFields]]
+[[deps.SignedDistanceFields]]
 deps = ["Random", "Statistics", "Test"]
 git-tree-sha1 = "d263a08ec505853a5ff1c1ebde2070419e3f28e9"
 uuid = "73760f76-fbc4-59ce-8f25-708e95d2df96"
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-[[SimpleTraits]]
+[[deps.SimpleTraits]]
 deps = ["InteractiveUtils", "MacroTools"]
 git-tree-sha1 = "5d7e3f4e11935503d3ecaf7186eac40602e7d231"
 uuid = "699a6c99-e7fa-54fc-8d76-47d257e15c1d"
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-[[Sockets]]
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 uuid = "6462fe0b-24de-5631-8697-dd941f90decc"
 
-[[SortingAlgorithms]]
+[[deps.SortingAlgorithms]]
 deps = ["DataStructures"]
 git-tree-sha1 = "b3363d7460f7d098ca0912c69b082f75625d7508"
 uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c"
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-[[SparseArrays]]
+[[deps.SparseArrays]]
 deps = ["LinearAlgebra", "Random"]
 uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
 
-[[SparseDiffTools]]
-deps = ["Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "LightGraphs", "LinearAlgebra", "Requires", "SparseArrays", "StaticArrays", "VertexSafeGraphs"]
-git-tree-sha1 = "0b0bd4086536520cfc452ba51b177be8cf634d91"
+[[deps.SparseDiffTools]]
+deps = ["Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "Requires", "SparseArrays", "StaticArrays", "VertexSafeGraphs"]
+git-tree-sha1 = "f33a0f6721b270cdf417f0c986e93c973e5913c8"
 uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804"
-version = "1.17.2"
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-[[SpecialFunctions]]
+[[deps.SpecialFunctions]]
 deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"]
-git-tree-sha1 = "f0bccf98e16759818ffc5d97ac3ebf87eb950150"
+git-tree-sha1 = "e08890d19787ec25029113e88c34ec20cac1c91e"
 uuid = "276daf66-3868-5448-9aa4-cd146d93841b"
-version = "1.8.1"
+version = "2.0.0"
 
-[[StackViews]]
+[[deps.StackViews]]
 deps = ["OffsetArrays"]
 git-tree-sha1 = "46e589465204cd0c08b4bd97385e4fa79a0c770c"
 uuid = "cae243ae-269e-4f55-b966-ac2d0dc13c15"
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-[[Static]]
+[[deps.Static]]
 deps = ["IfElse"]
-git-tree-sha1 = "e7bc80dc93f50857a5d1e3c8121495852f407e6a"
+git-tree-sha1 = "7f5a513baec6f122401abfc8e9c074fdac54f6c1"
 uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3"
-version = "0.4.0"
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-[[StaticArrays]]
+[[deps.StaticArrays]]
 deps = ["LinearAlgebra", "Random", "Statistics"]
 git-tree-sha1 = "3c76dde64d03699e074ac02eb2e8ba8254d428da"
 uuid = "90137ffa-7385-5640-81b9-e52037218182"
 version = "1.2.13"
 
-[[Statistics]]
+[[deps.Statistics]]
 deps = ["LinearAlgebra", "SparseArrays"]
 uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
 
-[[StatsAPI]]
-git-tree-sha1 = "1958272568dc176a1d881acb797beb909c785510"
+[[deps.StatsAPI]]
+git-tree-sha1 = "0f2aa8e32d511f758a2ce49208181f7733a0936a"
 uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0"
-version = "1.0.0"
+version = "1.1.0"
 
-[[StatsBase]]
+[[deps.StatsBase]]
 deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"]
-git-tree-sha1 = "eb35dcc66558b2dda84079b9a1be17557d32091a"
+git-tree-sha1 = "2bb0cb32026a66037360606510fca5984ccc6b75"
 uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
-version = "0.33.12"
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-[[StatsFuns]]
-deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"]
-git-tree-sha1 = "95072ef1a22b057b1e80f73c2a89ad238ae4cfff"
+[[deps.StatsFuns]]
+deps = ["ChainRulesCore", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"]
+git-tree-sha1 = "bedb3e17cc1d94ce0e6e66d3afa47157978ba404"
 uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c"
-version = "0.9.12"
+version = "0.9.14"
 
-[[StrideArraysCore]]
+[[deps.StrideArraysCore]]
 deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "ManualMemory", "Requires", "SIMDTypes", "Static", "ThreadingUtilities"]
-git-tree-sha1 = "f081c3c985849f4263fd0ed13e51feceed4ccc79"
+git-tree-sha1 = "12cf3253ebd8e2a3214ae171fbfe51e7e8d8ad28"
 uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da"
-version = "0.2.8"
+version = "0.2.9"
 
-[[StructArrays]]
+[[deps.StructArrays]]
 deps = ["Adapt", "DataAPI", "StaticArrays", "Tables"]
 git-tree-sha1 = "2ce41e0d042c60ecd131e9fb7154a3bfadbf50d3"
 uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a"
 version = "0.6.3"
 
-[[SuiteSparse]]
+[[deps.SuiteSparse]]
 deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"]
 uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9"
 
-[[TOML]]
+[[deps.TOML]]
 deps = ["Dates"]
 uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76"
 
-[[TableTraits]]
+[[deps.TableTraits]]
 deps = ["IteratorInterfaceExtensions"]
 git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39"
 uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c"
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-[[Tables]]
+[[deps.Tables]]
 deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "TableTraits", "Test"]
-git-tree-sha1 = "fed34d0e71b91734bf0a7e10eb1bb05296ddbcd0"
+git-tree-sha1 = "bb1064c9a84c52e277f1096cf41434b675cd368b"
 uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
-version = "1.6.0"
+version = "1.6.1"
 
-[[Tar]]
+[[deps.Tar]]
 deps = ["ArgTools", "SHA"]
 uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e"
 
-[[TensorCore]]
+[[deps.TensorCore]]
 deps = ["LinearAlgebra"]
 git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6"
 uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50"
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-[[Test]]
+[[deps.Test]]
 deps = ["InteractiveUtils", "Logging", "Random", "Serialization"]
 uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
 
-[[ThreadingUtilities]]
+[[deps.ThreadingUtilities]]
 deps = ["ManualMemory"]
 git-tree-sha1 = "03013c6ae7f1824131b2ae2fc1d49793b51e8394"
 uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5"
 version = "0.4.6"
 
-[[TiffImages]]
+[[deps.TiffImages]]
 deps = ["ColorTypes", "DataStructures", "DocStringExtensions", "FileIO", "FixedPointNumbers", "IndirectArrays", "Inflate", "OffsetArrays", "PkgVersion", "ProgressMeter", "UUIDs"]
 git-tree-sha1 = "c342ae2abf4902d65a0b0bf59b28506a6e17078a"
 uuid = "731e570b-9d59-4bfa-96dc-6df516fadf69"
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-[[TranscodingStreams]]
+[[deps.TranscodingStreams]]
 deps = ["Random", "Test"]
 git-tree-sha1 = "216b95ea110b5972db65aa90f88d8d89dcb8851c"
 uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
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-[[TreeViews]]
+[[deps.TreeViews]]
 deps = ["Test"]
 git-tree-sha1 = "8d0d7a3fe2f30d6a7f833a5f19f7c7a5b396eae6"
 uuid = "a2a6695c-b41b-5b7d-aed9-dbfdeacea5d7"
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-[[TriangularSolve]]
+[[deps.TriangularSolve]]
 deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"]
 git-tree-sha1 = "ec9a310324dd2c546c07f33a599ded9c1d00a420"
 uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf"
 version = "0.1.8"
 
-[[UUIDs]]
+[[deps.UUIDs]]
 deps = ["Random", "SHA"]
 uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"
 
-[[UnPack]]
+[[deps.UnPack]]
 git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b"
 uuid = "3a884ed6-31ef-47d7-9d2a-63182c4928ed"
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-[[Unicode]]
+[[deps.Unicode]]
 uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"
 
-[[UnicodeFun]]
+[[deps.UnicodeFun]]
 deps = ["REPL"]
 git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf"
 uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1"
 version = "0.4.1"
 
-[[Unitful]]
+[[deps.Unitful]]
 deps = ["ConstructionBase", "Dates", "LinearAlgebra", "Random"]
-git-tree-sha1 = "880f77d2cd4c6948e6bd55425b7b52f34dcd7f4b"
+git-tree-sha1 = "0992ed0c3ef66b0390e5752fe60054e5ff93b908"
 uuid = "1986cc42-f94f-5a68-af5c-568840ba703d"
-version = "1.9.1"
+version = "1.9.2"
 
-[[VectorizationBase]]
+[[deps.VectorizationBase]]
 deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "Hwloc", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static"]
-git-tree-sha1 = "5239606cf3552aff43d79ecc75b1af1ce4625109"
+git-tree-sha1 = "17e5847bb36730d90801170ecd0ce4041a3dde86"
 uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f"
-version = "0.21.21"
+version = "0.21.22"
 
-[[VertexSafeGraphs]]
-deps = ["LightGraphs"]
-git-tree-sha1 = "b9b450c99a3ca1cc1c6836f560d8d887bcbe356e"
+[[deps.VertexSafeGraphs]]
+deps = ["Graphs"]
+git-tree-sha1 = "8351f8d73d7e880bfc042a8b6922684ebeafb35c"
 uuid = "19fa3120-7c27-5ec5-8db8-b0b0aa330d6f"
-version = "0.1.2"
+version = "0.2.0"
 
-[[WeakRefStrings]]
+[[deps.WeakRefStrings]]
 deps = ["DataAPI", "InlineStrings", "Parsers"]
 git-tree-sha1 = "c69f9da3ff2f4f02e811c3323c22e5dfcb584cfa"
 uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5"
 version = "1.4.1"
 
-[[WoodburyMatrices]]
+[[deps.WoodburyMatrices]]
 deps = ["LinearAlgebra", "SparseArrays"]
 git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3"
 uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6"
 version = "0.5.5"
 
-[[XML2_jll]]
+[[deps.XML2_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "Zlib_jll"]
 git-tree-sha1 = "1acf5bdf07aa0907e0a37d3718bb88d4b687b74a"
 uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a"
 version = "2.9.12+0"
 
-[[XSLT_jll]]
+[[deps.XSLT_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"]
 git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a"
 uuid = "aed1982a-8fda-507f-9586-7b0439959a61"
 version = "1.1.34+0"
 
-[[Xorg_libX11_jll]]
+[[deps.Xorg_libX11_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll", "Xorg_xtrans_jll"]
 git-tree-sha1 = "5be649d550f3f4b95308bf0183b82e2582876527"
 uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc"
 version = "1.6.9+4"
 
-[[Xorg_libXau_jll]]
+[[deps.Xorg_libXau_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "4e490d5c960c314f33885790ed410ff3a94ce67e"
 uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec"
 version = "1.0.9+4"
 
-[[Xorg_libXdmcp_jll]]
+[[deps.Xorg_libXdmcp_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "4fe47bd2247248125c428978740e18a681372dd4"
 uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05"
 version = "1.1.3+4"
 
-[[Xorg_libXext_jll]]
+[[deps.Xorg_libXext_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"]
 git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3"
 uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3"
 version = "1.3.4+4"
 
-[[Xorg_libXrender_jll]]
+[[deps.Xorg_libXrender_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"]
 git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96"
 uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa"
 version = "0.9.10+4"
 
-[[Xorg_libpthread_stubs_jll]]
+[[deps.Xorg_libpthread_stubs_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "6783737e45d3c59a4a4c4091f5f88cdcf0908cbb"
 uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74"
 version = "0.1.0+3"
 
-[[Xorg_libxcb_jll]]
+[[deps.Xorg_libxcb_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"]
 git-tree-sha1 = "daf17f441228e7a3833846cd048892861cff16d6"
 uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b"
 version = "1.13.0+3"
 
-[[Xorg_xtrans_jll]]
+[[deps.Xorg_xtrans_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "79c31e7844f6ecf779705fbc12146eb190b7d845"
 uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10"
 version = "1.4.0+3"
 
-[[Zlib_jll]]
+[[deps.Zlib_jll]]
 deps = ["Libdl"]
 uuid = "83775a58-1f1d-513f-b197-d71354ab007a"
 
-[[ZygoteRules]]
+[[deps.ZygoteRules]]
 deps = ["MacroTools"]
 git-tree-sha1 = "8c1a8e4dfacb1fd631745552c8db35d0deb09ea0"
 uuid = "700de1a5-db45-46bc-99cf-38207098b444"
 version = "0.2.2"
 
-[[isoband_jll]]
+[[deps.isoband_jll]]
 deps = ["Libdl", "Pkg"]
 git-tree-sha1 = "a1ac99674715995a536bbce674b068ec1b7d893d"
 uuid = "9a68df92-36a6-505f-a73e-abb412b6bfb4"
 version = "0.2.2+0"
 
-[[libass_jll]]
+[[deps.libass_jll]]
 deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"]
 git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47"
 uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0"
 version = "0.15.1+0"
 
-[[libfdk_aac_jll]]
+[[deps.libblastrampoline_jll]]
+deps = ["Artifacts", "Libdl", "OpenBLAS_jll"]
+uuid = "8e850b90-86db-534c-a0d3-1478176c7d93"
+
+[[deps.libfdk_aac_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55"
 uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280"
 version = "2.0.2+0"
 
-[[libpng_jll]]
+[[deps.libpng_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"]
 git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c"
 uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f"
 version = "1.6.38+0"
 
-[[libvorbis_jll]]
+[[deps.libvorbis_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"]
 git-tree-sha1 = "c45f4e40e7aafe9d086379e5578947ec8b95a8fb"
 uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a"
 version = "1.3.7+0"
 
-[[nghttp2_jll]]
+[[deps.nghttp2_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
 
-[[p7zip_jll]]
+[[deps.p7zip_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0"
 
-[[x264_jll]]
+[[deps.x264_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2"
 uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a"
 version = "2021.5.5+0"
 
-[[x265_jll]]
+[[deps.x265_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9"
 uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76"

From 8624ae3d99ef9d790f1d740924488f567e502882 Mon Sep 17 00:00:00 2001
From: gaelforget <gforget@mit.edu>
Date: Fri, 17 Dec 2021 22:55:13 -0500
Subject: [PATCH 06/11] update example

---
 examples/jupyter/flow_fields.jl               |    2 +-
 examples/jupyter/helper_functions.jl          |    2 +-
 .../worldwide/global_ocean_circulation.jl     | 1547 +----------------
 3 files changed, 9 insertions(+), 1542 deletions(-)

diff --git a/examples/jupyter/flow_fields.jl b/examples/jupyter/flow_fields.jl
index 52eda82d..5c00fd05 100644
--- a/examples/jupyter/flow_fields.jl
+++ b/examples/jupyter/flow_fields.jl
@@ -68,7 +68,7 @@ function global_ocean_circulation(;k=1,ny=2)
   p=dirname(pathof(IndividualDisplacements))
   γ=GridSpec("LatLonCap",MeshArrays.GRID_LLC90)
   Γ=GridLoad(γ;option="full")
-  Γ=merge(Γ,NeighborTileIndices_cs(Γ))
+  Γ=merge(Γ,MeshArrays.NeighborTileIndices_cs(Γ))
 
   func=(u -> update_location_llc!(u,𝐷))
   Γ=merge(Γ,(; update_location! = func))
diff --git a/examples/jupyter/helper_functions.jl b/examples/jupyter/helper_functions.jl
index 8980d798..7d6503df 100644
--- a/examples/jupyter/helper_functions.jl
+++ b/examples/jupyter/helper_functions.jl
@@ -94,7 +94,7 @@ function set_up_FlowFields(k::Int,Γ::NamedTuple,pth::String)
          XC=XC, YC=YC, iDXC=iDXC, iDYC=iDYC,
          k=k, msk=msk, θ0=similar(msk), θ1=similar(msk))
 
-    𝐷 = merge(𝐷 , NeighborTileIndices_cs(Γ))
+    𝐷 = merge(𝐷 , MeshArrays.NeighborTileIndices_cs(Γ))
 
     return 𝑃,𝐷
 end
diff --git a/examples/worldwide/global_ocean_circulation.jl b/examples/worldwide/global_ocean_circulation.jl
index 2015ae04..61367489 100644
--- a/examples/worldwide/global_ocean_circulation.jl
+++ b/examples/worldwide/global_ocean_circulation.jl
@@ -1,11 +1,14 @@
 ### A Pluto.jl notebook ###
-# v0.17.0
+# v0.17.3
 
 using Markdown
 using InteractiveUtils
 
 # ╔═╡ 104ce9b0-3fd1-11ec-3eff-3b029552e3d9
 begin
+	using Pkg
+	Pkg.activate()
+	
 	using IndividualDisplacements, OceanStateEstimation, DataFrames, Statistics, CSV
 	using MeshArrays, MITgcmTools, NetCDF, Plots
 	"done with loading packages"
@@ -36,9 +39,9 @@ begin
 	OceanStateEstimation.get_ecco_velocity_if_needed();
 	γ=GridSpec("LatLonCap",MeshArrays.GRID_LLC90)
 	Γ=GridLoad(γ;option="full")
-	Γ=merge(Γ,NeighborTileIndices_cs(Γ))
+	Γ=merge(Γ,MeshArrays.NeighborTileIndices_cs(Γ))
 
-	func=(u -> update_location_llc!(u,Γ))
+	func=(u -> MeshArrays.update_location_llc!(u,Γ))
 	Γ=merge(Γ,(; update_location! = func))
 
 	"Done with Grid and Velocity Files"
@@ -282,7 +285,7 @@ function set_up_FlowFields(k::Int,Γ::NamedTuple,pth::String)
 	 XC=XC, YC=YC, iDXC=iDXC, iDYC=iDYC, 
 	 k=k, msk=msk, θ0=similar(msk), θ1=similar(msk))
 
-    𝐷 = merge(𝐷 , NeighborTileIndices_cs(Γ))
+    𝐷 = merge(𝐷 , MeshArrays.NeighborTileIndices_cs(Γ))
     
     return 𝑃,𝐷
 end
@@ -306,9 +309,6 @@ begin
 	𝐷.🔄(𝑃,𝐷,0.0)
 end
 
-# ╔═╡ 0f95fbfb-49d9-4ebe-9cc9-fd69507d7492
-k
-
 # ╔═╡ f727992f-b72a-45bc-93f1-cc8daf89af0f
 begin
 	np=500
@@ -418,1542 +418,11 @@ begin
 	map(𝐼,DL)
 end
 
-# ╔═╡ 00000000-0000-0000-0000-000000000001
-PLUTO_PROJECT_TOML_CONTENTS = """
-[deps]
-CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"
-DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
-IndividualDisplacements = "b92f0c32-5b7e-11e9-1d7b-238b2da8b0e6"
-MITgcmTools = "62725fbc-3a66-4df3-9000-e33e85b3a198"
-MeshArrays = "cb8c808f-1acf-59a3-9d2b-6e38d009f683"
-NetCDF = "30363a11-5582-574a-97bb-aa9a979735b9"
-OceanStateEstimation = "891f6deb-a4f5-4bc5-a2e3-1e8f649cdd2c"
-Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
-Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
-
-[compat]
-CSV = "~0.9.10"
-DataFrames = "~1.2.2"
-IndividualDisplacements = "~0.3.3"
-MITgcmTools = "~0.1.31"
-MeshArrays = "~0.2.26"
-NetCDF = "~0.11.3"
-OceanStateEstimation = "~0.1.15"
-Plots = "~1.23.5"
-"""
-
-# ╔═╡ 00000000-0000-0000-0000-000000000002
-PLUTO_MANIFEST_TOML_CONTENTS = """
-# This file is machine-generated - editing it directly is not advised
-
-[[AWS]]
-deps = ["Base64", "Compat", "Dates", "Downloads", "GitHub", "HTTP", "IniFile", "JSON", "MbedTLS", "Mocking", "OrderedCollections", "Retry", "Sockets", "URIs", "UUIDs", "XMLDict"]
-git-tree-sha1 = "5052fc28bdd6f2501e86b8d063cfe7c82a094a36"
-uuid = "fbe9abb3-538b-5e4e-ba9e-bc94f4f92ebc"
-version = "1.70.0"
-
-[[Adapt]]
-deps = ["LinearAlgebra"]
-git-tree-sha1 = "84918055d15b3114ede17ac6a7182f68870c16f7"
-uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
-version = "3.3.1"
-
-[[ArgTools]]
-uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
-
-[[ArnoldiMethod]]
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-uuid = "ec485272-7323-5ecc-a04f-4719b315124d"
-version = "0.1.0"
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-
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-
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-git-tree-sha1 = "e747dac84f39c62aff6956651ec359686490134e"
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-git-tree-sha1 = "ece2350174195bb31de1a63bea3a41ae1aa593b6"
-uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd"
-version = "0.9.1+5"
-"""
-
 # ╔═╡ Cell order:
 # ╟─c9e9faa8-f5f0-479c-bc85-877ff7114883
 # ╟─104ce9b0-3fd1-11ec-3eff-3b029552e3d9
 # ╟─7fec71b4-849f-4369-bec2-26bfe2e00a97
 # ╟─07e65622-3698-4dd8-b718-83588e116e58
-# ╠═0f95fbfb-49d9-4ebe-9cc9-fd69507d7492
 # ╟─94ca10ae-6a8a-4038-ace0-07d7d9026712
 # ╟─218b9beb-68f2-4498-a96d-08e0719b4cff
 # ╟─f1215951-2eb2-490b-875a-91c1205b8f63
@@ -1977,5 +446,3 @@ version = "0.9.1+5"
 # ╟─14f7eadb-9ac4-41cd-b773-8b17d0e69a2c
 # ╟─c57f60b8-cec6-4ef0-bb63-0201c18c9ece
 # ╟─4a7ba3ff-449a-44e1-ad10-1de15a6d31cc
-# ╟─00000000-0000-0000-0000-000000000001
-# ╟─00000000-0000-0000-0000-000000000002

From 60504b0ccf546fedd36f4b3b9069492159491ddb Mon Sep 17 00:00:00 2001
From: gaelforget <gforget@mit.edu>
Date: Fri, 17 Dec 2021 23:29:19 -0500
Subject: [PATCH 07/11] update notebooks

---
 examples/worldwide/interactive_UI.jl          | 1686 +---------------
 examples/worldwide/three_dimensional_ocean.jl | 1742 +----------------
 2 files changed, 13 insertions(+), 3415 deletions(-)

diff --git a/examples/worldwide/interactive_UI.jl b/examples/worldwide/interactive_UI.jl
index a575c5ca..7b0b1d4e 100644
--- a/examples/worldwide/interactive_UI.jl
+++ b/examples/worldwide/interactive_UI.jl
@@ -1,5 +1,5 @@
 ### A Pluto.jl notebook ###
-# v0.17.0
+# v0.17.3
 
 using Markdown
 using InteractiveUtils
@@ -7,14 +7,18 @@ using InteractiveUtils
 # This Pluto notebook uses @bind for interactivity. When running this notebook outside of Pluto, the following 'mock version' of @bind gives bound variables a default value (instead of an error).
 macro bind(def, element)
     quote
+        local iv = try Base.loaded_modules[Base.PkgId(Base.UUID("6e696c72-6542-2067-7265-42206c756150"), "AbstractPlutoDingetjes")].Bonds.initial_value catch; b -> missing; end
         local el = $(esc(element))
-        global $(esc(def)) = Core.applicable(Base.get, el) ? Base.get(el) : missing
+        global $(esc(def)) = Core.applicable(Base.get, el) ? Base.get(el) : iv(el)
         el
     end
 end
 
 # ╔═╡ 747d446a-dfeb-11ea-3533-c9404fd41688
 begin
+	using Pkg 
+	Pkg.activate()
+	
 	using IndividualDisplacements, MeshArrays, DataFrames, OceanStateEstimation
 	using Statistics, PlutoUI, OrdinaryDiffEq, StatsPlots, NetCDF
 	✓ = "😃"
@@ -253,1682 +257,6 @@ begin
 	plot(plt_map,plt_hist,plt_dlon,plt_dlat)
 end
 
-# ╔═╡ 00000000-0000-0000-0000-000000000001
-PLUTO_PROJECT_TOML_CONTENTS = """
-[deps]
-DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
-IndividualDisplacements = "b92f0c32-5b7e-11e9-1d7b-238b2da8b0e6"
-MeshArrays = "cb8c808f-1acf-59a3-9d2b-6e38d009f683"
-NetCDF = "30363a11-5582-574a-97bb-aa9a979735b9"
-OceanStateEstimation = "891f6deb-a4f5-4bc5-a2e3-1e8f649cdd2c"
-OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
-PlutoUI = "7f904dfe-b85e-4ff6-b463-dae2292396a8"
-Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
-StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd"
-
-[compat]
-DataFrames = "~1.2.2"
-IndividualDisplacements = "~0.3.3"
-MeshArrays = "~0.2.26"
-NetCDF = "~0.11.3"
-OceanStateEstimation = "~0.1.15"
-OrdinaryDiffEq = "~5.66.1"
-PlutoUI = "~0.7.18"
-StatsPlots = "~0.14.28"
-"""
-
-# ╔═╡ 00000000-0000-0000-0000-000000000002
-PLUTO_MANIFEST_TOML_CONTENTS = """
-# This file is machine-generated - editing it directly is not advised
-
-[[AWS]]
-deps = ["Base64", "Compat", "Dates", "Downloads", "GitHub", "HTTP", "IniFile", "JSON", "MbedTLS", "Mocking", "OrderedCollections", "Retry", "Sockets", "URIs", "UUIDs", "XMLDict"]
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-
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-
-[[Xorg_libXi_jll]]
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-git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246"
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-version = "1.7.10+4"
-
-[[Xorg_libXinerama_jll]]
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-[[Xorg_libXrandr_jll]]
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-git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631"
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-version = "1.5.2+4"
-
-[[Xorg_libXrender_jll]]
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-git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96"
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-version = "0.9.10+4"
-
-[[Xorg_libpthread_stubs_jll]]
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-git-tree-sha1 = "6783737e45d3c59a4a4c4091f5f88cdcf0908cbb"
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-version = "0.1.0+3"
-
-[[Xorg_libxcb_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"]
-git-tree-sha1 = "daf17f441228e7a3833846cd048892861cff16d6"
-uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b"
-version = "1.13.0+3"
-
-[[Xorg_libxkbfile_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"]
-git-tree-sha1 = "926af861744212db0eb001d9e40b5d16292080b2"
-uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a"
-version = "1.1.0+4"
-
-[[Xorg_xcb_util_image_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"]
-git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97"
-uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b"
-version = "0.4.0+1"
-
-[[Xorg_xcb_util_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"]
-git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1"
-uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5"
-version = "0.4.0+1"
-
-[[Xorg_xcb_util_keysyms_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"]
-git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00"
-uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7"
-version = "0.4.0+1"
-
-[[Xorg_xcb_util_renderutil_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"]
-git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e"
-uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e"
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-
-[[Xorg_xcb_util_wm_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"]
-git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67"
-uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361"
-version = "0.4.1+1"
-
-[[Xorg_xkbcomp_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxkbfile_jll"]
-git-tree-sha1 = "4bcbf660f6c2e714f87e960a171b119d06ee163b"
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-version = "1.4.2+4"
-
-[[Xorg_xkeyboard_config_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xkbcomp_jll"]
-git-tree-sha1 = "5c8424f8a67c3f2209646d4425f3d415fee5931d"
-uuid = "33bec58e-1273-512f-9401-5d533626f822"
-version = "2.27.0+4"
-
-[[Xorg_xtrans_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "79c31e7844f6ecf779705fbc12146eb190b7d845"
-uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10"
-version = "1.4.0+3"
-
-[[Zarr]]
-deps = ["AWS", "Blosc", "CodecZlib", "DataStructures", "Dates", "DiskArrays", "HTTP", "JSON", "OffsetArrays", "Pkg"]
-git-tree-sha1 = "18ac3fd29790edeee42bfed5020b12ae61a029d0"
-uuid = "0a941bbe-ad1d-11e8-39d9-ab76183a1d99"
-version = "0.6.3"
-
-[[Zlib_jll]]
-deps = ["Libdl"]
-uuid = "83775a58-1f1d-513f-b197-d71354ab007a"
-
-[[Zstd_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "cc4bf3fdde8b7e3e9fa0351bdeedba1cf3b7f6e6"
-uuid = "3161d3a3-bdf6-5164-811a-617609db77b4"
-version = "1.5.0+0"
-
-[[ZygoteRules]]
-deps = ["MacroTools"]
-git-tree-sha1 = "8c1a8e4dfacb1fd631745552c8db35d0deb09ea0"
-uuid = "700de1a5-db45-46bc-99cf-38207098b444"
-version = "0.2.2"
-
-[[libass_jll]]
-deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"]
-git-tree-sha1 = "acc685bcf777b2202a904cdcb49ad34c2fa1880c"
-uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0"
-version = "0.14.0+4"
-
-[[libfdk_aac_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "7a5780a0d9c6864184b3a2eeeb833a0c871f00ab"
-uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280"
-version = "0.1.6+4"
-
-[[libpng_jll]]
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-git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c"
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-version = "1.6.38+0"
-
-[[libsodium_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "848ab3d00fe39d6fbc2a8641048f8f272af1c51e"
-uuid = "a9144af2-ca23-56d9-984f-0d03f7b5ccf8"
-version = "1.0.20+0"
-
-[[libvorbis_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"]
-git-tree-sha1 = "c45f4e40e7aafe9d086379e5578947ec8b95a8fb"
-uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a"
-version = "1.3.7+0"
-
-[[nghttp2_jll]]
-deps = ["Artifacts", "Libdl"]
-uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
-
-[[p7zip_jll]]
-deps = ["Artifacts", "Libdl"]
-uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0"
-
-[[x264_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "d713c1ce4deac133e3334ee12f4adff07f81778f"
-uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a"
-version = "2020.7.14+2"
-
-[[x265_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "487da2f8f2f0c8ee0e83f39d13037d6bbf0a45ab"
-uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76"
-version = "3.0.0+3"
-
-[[xkbcommon_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"]
-git-tree-sha1 = "ece2350174195bb31de1a63bea3a41ae1aa593b6"
-uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd"
-version = "0.9.1+5"
-"""
-
 # ╔═╡ Cell order:
 # ╟─bf19d29c-e70e-11ea-0153-d3a49981d56c
 # ╟─4935fd46-e70f-11ea-386c-f9c444a20644
@@ -1944,5 +272,3 @@ version = "0.9.1+5"
 # ╟─747d446a-dfeb-11ea-3533-c9404fd41688
 # ╟─1811955d-618d-49e3-9f81-63195e2632fe
 # ╟─87c5e5d4-c343-49fb-bc7e-6b2c0e647a38
-# ╟─00000000-0000-0000-0000-000000000001
-# ╟─00000000-0000-0000-0000-000000000002
diff --git a/examples/worldwide/three_dimensional_ocean.jl b/examples/worldwide/three_dimensional_ocean.jl
index d27173e8..1a7364c4 100644
--- a/examples/worldwide/three_dimensional_ocean.jl
+++ b/examples/worldwide/three_dimensional_ocean.jl
@@ -1,11 +1,14 @@
 ### A Pluto.jl notebook ###
-# v0.17.0
+# v0.17.3
 
 using Markdown
 using InteractiveUtils
 
 # ╔═╡ 16eab80b-325b-43bd-8bda-6b9ed27513a8
 begin
+	using Pkg
+	Pkg.activate()
+	
 	using IndividualDisplacements, OceanStateEstimation, DataFrames, MeshArrays, NetCDF
 	import CairoMakie as Mkie
 end
@@ -155,30 +158,6 @@ custom🔴 = DataFrame(ID=Int[], fid=Int[], x=Float64[], y=Float64[],
    k=Float64[], z=Float64[], iso=Float64[], t=Float64[],
    lon=Float64[], lat=Float64[], year=Float64[], col=Symbol[])
 
-# ╔═╡ fd541c93-1b58-47a3-8c48-2d635fe0bda6
-"""
-    isosurface(θ,T,z)
-
-```
-isosurface(𝐼.𝑃.θ0,15,Γ.RC)
-```    
-"""
-function isosurface(θ,T,z)
-    d=NaN*similar(θ[:,1])
-    nr=size(θ,2)
-    for j=1:size(d,1)
-        for k=1:nr-1
-            i=findall(isnan.(d[j]).&(θ[j,k].>T).&(θ[j,k+1].<=T))
-            a=(θ[j,k][i] .- T)./(θ[j,k][i] .- θ[j,k+1][i])
-            d[j][i]=(1 .- a).*Γ.RC[k] + a.*Γ.RC[k+1]
-            i=findall(isnan.(d[j]).&(θ[j,k].<=T).&(θ[j,k+1].>T))
-            a=(θ[j,k+1][i] .- T)./(θ[j,k+1][i] .- θ[j,k][i])
-            d[j][i]=(1 .- a).*Γ.RC[k+1] + a.*Γ.RC[k]
-        end
-    end
-    return d
-end
-
 # ╔═╡ c5eeb1f0-2c6f-4cd5-8a66-538da09c282d
 function custom🔧(sol,𝑃::𝐹_MeshArray3D;id=missing,𝑇=missing)
    df=postprocess_MeshArray(sol,𝑃,id=id,𝑇=𝑇)
@@ -196,7 +175,7 @@ function custom🔧(sol,𝑃::𝐹_MeshArray3D;id=missing,𝑇=missing)
 
    #add one isotherm depth
    θ=0.5*(𝐷.θ0+𝐷.θ1)
-   d=isosurface(θ,15,𝐷.RC)
+   d=MeshArrays.isosurface(θ,15,𝐷)
    d[findall(isnan.(d))].=0.
    df.iso=interp_to_xy(df,exchange(d));
 
@@ -254,1713 +233,9 @@ function plot(𝐼::Individuals)
     return fig
 end
 
-# ╔═╡ 00000000-0000-0000-0000-000000000001
-PLUTO_PROJECT_TOML_CONTENTS = """
-[deps]
-CairoMakie = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0"
-DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
-IndividualDisplacements = "b92f0c32-5b7e-11e9-1d7b-238b2da8b0e6"
-MeshArrays = "cb8c808f-1acf-59a3-9d2b-6e38d009f683"
-NetCDF = "30363a11-5582-574a-97bb-aa9a979735b9"
-OceanStateEstimation = "891f6deb-a4f5-4bc5-a2e3-1e8f649cdd2c"
-
-[compat]
-CairoMakie = "~0.6.6"
-DataFrames = "~1.2.2"
-IndividualDisplacements = "~0.3.3"
-MeshArrays = "~0.2.26"
-NetCDF = "~0.11.3"
-OceanStateEstimation = "~0.1.15"
-"""
-
-# ╔═╡ 00000000-0000-0000-0000-000000000002
-PLUTO_MANIFEST_TOML_CONTENTS = """
-# This file is machine-generated - editing it directly is not advised
-
-[[AWS]]
-deps = ["Base64", "Compat", "Dates", "Downloads", "GitHub", "HTTP", "IniFile", "JSON", "MbedTLS", "Mocking", "OrderedCollections", "Retry", "Sockets", "URIs", "UUIDs", "XMLDict"]
-git-tree-sha1 = "5052fc28bdd6f2501e86b8d063cfe7c82a094a36"
-uuid = "fbe9abb3-538b-5e4e-ba9e-bc94f4f92ebc"
-version = "1.70.0"
-
-[[AbstractFFTs]]
-deps = ["LinearAlgebra"]
-git-tree-sha1 = "485ee0867925449198280d4af84bdb46a2a404d0"
-uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c"
-version = "1.0.1"
-
-[[AbstractTrees]]
-git-tree-sha1 = "03e0550477d86222521d254b741d470ba17ea0b5"
-uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c"
-version = "0.3.4"
-
-[[Adapt]]
-deps = ["LinearAlgebra"]
-git-tree-sha1 = "84918055d15b3114ede17ac6a7182f68870c16f7"
-uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
-version = "3.3.1"
-
-[[Animations]]
-deps = ["Colors"]
-git-tree-sha1 = "e81c509d2c8e49592413bfb0bb3b08150056c79d"
-uuid = "27a7e980-b3e6-11e9-2bcd-0b925532e340"
-version = "0.4.1"
-
-[[ArgTools]]
-uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
-
-[[ArnoldiMethod]]
-deps = ["LinearAlgebra", "Random", "StaticArrays"]
-git-tree-sha1 = "f87e559f87a45bece9c9ed97458d3afe98b1ebb9"
-uuid = "ec485272-7323-5ecc-a04f-4719b315124d"
-version = "0.1.0"
-
-[[ArrayInterface]]
-deps = ["Compat", "IfElse", "LinearAlgebra", "Requires", "SparseArrays", "Static"]
-git-tree-sha1 = "e527b258413e0c6d4f66ade574744c94edef81f8"
-uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9"
-version = "3.1.40"
-
-[[Artifacts]]
-uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
-
-[[Automa]]
-deps = ["Printf", "ScanByte", "TranscodingStreams"]
-git-tree-sha1 = "d50976f217489ce799e366d9561d56a98a30d7fe"
-uuid = "67c07d97-cdcb-5c2c-af73-a7f9c32a568b"
-version = "0.8.2"
-
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-
 # ╔═╡ Cell order:
 # ╟─68c92218-40d3-11ec-0397-1747ac61c311
-# ╠═16eab80b-325b-43bd-8bda-6b9ed27513a8
+# ╟─16eab80b-325b-43bd-8bda-6b9ed27513a8
 # ╟─44346351-f249-4376-b002-8147755ed489
 # ╟─66c95828-227c-4db5-a6f1-3e3004a99785
 # ╟─f199f321-976a-4ccd-a003-140211aa67fe
@@ -1972,7 +247,4 @@ version = "3.0.0+3"
 # ╟─378b6547-898d-477a-a796-285a1f7e9b08
 # ╟─b754f4f6-b513-4eda-b689-8e0529223417
 # ╟─c5eeb1f0-2c6f-4cd5-8a66-538da09c282d
-# ╟─fd541c93-1b58-47a3-8c48-2d635fe0bda6
-# ╠═7f3b1f13-abfa-4fc0-8169-b69f1c3519f4
-# ╟─00000000-0000-0000-0000-000000000001
-# ╟─00000000-0000-0000-0000-000000000002
+# ╟─7f3b1f13-abfa-4fc0-8169-b69f1c3519f4

From f11fe54d7e38e13ff0084c840a2ccaae7071f71a Mon Sep 17 00:00:00 2001
From: gaelforget <gforget@mit.edu>
Date: Fri, 17 Dec 2021 23:30:30 -0500
Subject: [PATCH 08/11] update after MeshArrays.jl

---
 src/compute.jl        | 4 ++--
 src/data_wrangling.jl | 4 ++--
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/src/compute.jl b/src/compute.jl
index 9f53196d..1a80b062 100644
--- a/src/compute.jl
+++ b/src/compute.jl
@@ -36,7 +36,7 @@ function dxdt!(du::Array{T,1},u::Array{T,1},𝑃::𝐹_MeshArray3D,tim) where T
     dt=mydt(tim,𝑃.𝑇)
     g=𝑃.u0.grid
     #
-    while location_is_out(u,g)
+    while MeshArrays.location_is_out(u,g)
         𝑃.update_location!(u)
     end
 
@@ -119,7 +119,7 @@ function dxdt!(du::Array{T,1},u::Array{T,1},𝑃::𝐹_MeshArray2D,tim) where T
     dt=mydt(tim,𝑃.𝑇)
     g=𝑃.u0.grid
     #
-    while location_is_out(u,g)
+    while MeshArrays.location_is_out(u,g)
         𝑃.update_location!(u)
     end
 
diff --git a/src/data_wrangling.jl b/src/data_wrangling.jl
index 297bcf02..4439a6c5 100644
--- a/src/data_wrangling.jl
+++ b/src/data_wrangling.jl
@@ -88,7 +88,7 @@ end
     add_lonlat!(df::DataFrame,XC,YC,func::Function)
 
 Add lon & lat to dataframe using "exchanged" XC, YC after updating 
-subdomain indices (via func) if needed (location_is_out)
+subdomain indices (via func) if needed (MeshArrays.location_is_out)
 """
 function add_lonlat!(df::DataFrame,XC,YC,func::Function)
     g=XC.grid
@@ -96,7 +96,7 @@ function add_lonlat!(df::DataFrame,XC,YC,func::Function)
 
     for i in eachindex(df.lon)
         u[:]=[df.x[i];df.y[i];df.fid[i]]
-        while location_is_out(u,g)
+        while MeshArrays.location_is_out(u,g)
             func(u)
             df.x[i]=u[1]
             df.y[i]=u[2]

From 71e6abc7e31fef6171986177dea778b5624b9184 Mon Sep 17 00:00:00 2001
From: gaelforget <gforget@mit.edu>
Date: Fri, 17 Dec 2021 23:30:46 -0500
Subject: [PATCH 09/11] bump version

---
 Project.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/Project.toml b/Project.toml
index 0587af5c..a143d617 100644
--- a/Project.toml
+++ b/Project.toml
@@ -1,7 +1,7 @@
 name = "IndividualDisplacements"
 uuid = "b92f0c32-5b7e-11e9-1d7b-238b2da8b0e6"
 authors = ["gaelforget <gforget@mit.edu>"]
-version = "0.3.4"
+version = "0.3.5"
 
 [deps]
 Artifacts = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"

From b01e9f1320d091a24fa71467d9b0cd9bb7956e23 Mon Sep 17 00:00:00 2001
From: gaelforget <gforget@mit.edu>
Date: Sat, 18 Dec 2021 00:01:38 -0500
Subject: [PATCH 10/11] fix example

---
 examples/jupyter/example123.jl | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/examples/jupyter/example123.jl b/examples/jupyter/example123.jl
index 281d662b..bee17048 100644
--- a/examples/jupyter/example123.jl
+++ b/examples/jupyter/example123.jl
@@ -158,9 +158,9 @@ function example2_setup()
    ## Visualize velocity fields
 
    mskW=read_mds(γ.path*"hFacW",MeshArray(γ,Float32,nr))
-   mskW=1.0 .+ 0.0 * mask(mskW[:,kk],NaN,0.0)
+   mskW=1.0 .+ 0.0 * MeshArrays.mask(mskW[:,kk],NaN,0.0)
    mskS=read_mds(γ.path*"hFacS",MeshArray(γ,Float32,nr))
-   mskS=1.0 .+ 0.0 * mask(mskS[:,kk],NaN,0.0)
+   mskS=1.0 .+ 0.0 * MeshArrays.mask(mskS[:,kk],NaN,0.0)
    Γ=merge(Γ,Dict("mskW" => mskW, "mskS" => mskS))
    #convert to NamedTuple
    Γ=(; zip(Symbol.(keys(Γ)), values(Γ))...)

From 6e8342e4c46e21e7321b7685973822ec2f829edd Mon Sep 17 00:00:00 2001
From: gaelforget <gforget@mit.edu>
Date: Sat, 18 Dec 2021 00:26:47 -0500
Subject: [PATCH 11/11] update after MeshArrays.jl

---
 examples/jupyter/flow_fields.jl | 6 +++---
 src/data_wrangling.jl           | 2 +-
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/examples/jupyter/flow_fields.jl b/examples/jupyter/flow_fields.jl
index 5c00fd05..2e0dd872 100644
--- a/examples/jupyter/flow_fields.jl
+++ b/examples/jupyter/flow_fields.jl
@@ -70,7 +70,7 @@ function global_ocean_circulation(;k=1,ny=2)
   Γ=GridLoad(γ;option="full")
   Γ=merge(Γ,MeshArrays.NeighborTileIndices_cs(Γ))
 
-  func=(u -> update_location_llc!(u,𝐷))
+  func=(u -> MeshArrays.update_location_llc!(u,𝐷))
   Γ=merge(Γ,(; update_location! = func))
 
   #initialize u0,u1 etc
@@ -97,7 +97,7 @@ function OCCA_FlowFields(;backward_in_time::Bool=false,nmax=Inf)
    isfinite(nmax) ? n=min(n,Int(nmax)) : nothing
 
    g=Γ.XC.grid
-   func=(u -> IndividualDisplacements.update_location_dpdo!(u,g))
+   func=(u -> MeshArrays.update_location_dpdo!(u,g))
 
    jj=[:hFacC, :hFacW, :hFacS, :DXG, :DYG, :RAC, :RAZ, :RAS]
    ii=findall([!in(i,jj) for i in keys(Γ)])
@@ -242,7 +242,7 @@ function test2_periodic_domain(np = 12, nq = 12)
     v = 0.3 ./ Γ.DYC
     (u, v) = exchange(u, v, 1)
 
-    f = (u -> IndividualDisplacements.update_location_dpdo!(u,Γ.XC.grid))
+    f = (u -> MeshArrays.update_location_dpdo!(u,Γ.XC.grid))
     𝑃=FlowFields(u,u,v,v,[0.0,400.0],f)
 
     #initial conditions
diff --git a/src/data_wrangling.jl b/src/data_wrangling.jl
index 4439a6c5..476db8f3 100644
--- a/src/data_wrangling.jl
+++ b/src/data_wrangling.jl
@@ -18,7 +18,7 @@ function convert_to_FlowFields(U::Array{T,2},V::Array{T,2},t1::T) where T
     u=MeshArray(g,[U])
     v=MeshArray(g,[V])
     (u,v)=exchange(u,v,1)
-    func=(u -> IndividualDisplacements.update_location_dpdo!(u,g))
+    func=(u -> MeshArrays.update_location_dpdo!(u,g))
 
     𝐹_MeshArray2D{eltype(u)}(u,u,v,v,[0,t1],func)
 end