-
Notifications
You must be signed in to change notification settings - Fork 5
/
Copy path1.6.0-DEV-d474c98667.log
212 lines (209 loc) · 9.11 KB
/
1.6.0-DEV-d474c98667.log
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
Current time is 2020-10-26T08:06:42.222
Julia Version 1.6.0-DEV.1325
Commit d474c98667 (2020-10-24 16:32 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: AMD EPYC 7502 32-Core Processor
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-11.0.0 (ORCJIT, znver2)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
JULIA_MAX_NUM_PRECOMPILE_FILES = 9223372036854775807
JULIA_PKG_SERVER =
Starting installation at 2020-10-26T08:06:45.491
Resolving package versions...
Installed SpecialFunctions ───────────── v0.10.3
Installed SymEngine ──────────────────── v0.6.0
Installed BinaryProvider ─────────────── v0.5.10
Installed RecipesBase ────────────────── v0.8.0
Installed Compat ─────────────────────── v3.22.0
Installed IterativeSolvers ───────────── v0.8.4
Installed CompilerSupportLibraries_jll ─ v0.3.4+0
Installed JLLWrappers ────────────────── v1.1.3
Cloning [efe28fd5-8261-553b-a9e1-b2916fc3738e] OpenSpecFun_jll from https://github.com/JuliaBinaryWrappers/OpenSpecFun_jll.jl.git
[?25l Fetching: [> ] 0.0 %[2K[?25h Installed OpenSpecFun_jll ────────────── v0.5.3+4
Cloning [27ef9b34-1325-4cec-ba33-00f2f4637873] GPLinearODEMaker from https://github.com/christiangil/GPLinearODEMaker.jl.git
[?25l Fetching: [> ] 0.0 %[2K[?25h Installed GPLinearODEMaker ───────────── v0.1.1
Updating `~/.julia/environments/v1.6/Project.toml`
[27ef9b34] + GPLinearODEMaker v0.1.1
Updating `~/.julia/environments/v1.6/Manifest.toml`
[b99e7846] + BinaryProvider v0.5.10
[34da2185] + Compat v3.22.0
[27ef9b34] + GPLinearODEMaker v0.1.1
[42fd0dbc] + IterativeSolvers v0.8.4
[692b3bcd] + JLLWrappers v1.1.3
[3cdcf5f2] + RecipesBase v0.8.0
[276daf66] + SpecialFunctions v0.10.3
[123dc426] + SymEngine v0.6.0
[e66e0078] + CompilerSupportLibraries_jll v0.3.4+0
[efe28fd5] + OpenSpecFun_jll v0.5.3+4
[0dad84c5] + ArgTools
[56f22d72] + Artifacts
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[f43a241f] + Downloads
[b77e0a4c] + InteractiveUtils
[b27032c2] + LibCURL
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[fa267f1f] + TOML
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
[deac9b47] + LibCURL_jll
[14a3606d] + MozillaCACerts_jll
Building SymEngine → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/f5cb02e64d8cc4bbe3230ed28b5c4b9f763fada9/build.log`
Precompiling project... (tip: to disable auto-precompilation set ENV["JULIA_PKG_PRECOMPILE_AUTO"]=0)
[32m ✓ [39m[90mRecipesBase[39m
[32m ✓ [39m[90mJLLWrappers[39m
[32m ✓ [39m[90mCompat[39m
[32m ✓ [39m[90mIterativeSolvers[39m
[32m ✓ [39m[90mCompilerSupportLibraries_jll[39m
[32m ✓ [39m[90mOpenSpecFun_jll[39m
[32m ✓ [39m[90mSpecialFunctions[39m
[32m ✓ [39m[90mSymEngine[39m
[32m ✓ [39mGPLinearODEMaker
9 dependencies successfully precompiled (1 already precompiled)
Starting tests at 2020-10-26T08:12:01.821
Testing GPLinearODEMaker
Status `/tmp/jl_P0SdmX/Project.toml`
[e30172f5] Documenter v0.25.2
[27ef9b34] GPLinearODEMaker v0.1.1
[42fd0dbc] IterativeSolvers v0.8.4
[276daf66] SpecialFunctions v0.10.3
[123dc426] SymEngine v0.6.0
[8ba89e20] Distributed
[37e2e46d] LinearAlgebra
[9a3f8284] Random
[1a1011a3] SharedArrays
[10745b16] Statistics
[8dfed614] Test
Status `/tmp/jl_P0SdmX/Manifest.toml`
[b99e7846] BinaryProvider v0.5.10
[34da2185] Compat v3.22.0
[ffbed154] DocStringExtensions v0.8.3
[e30172f5] Documenter v0.25.2
[27ef9b34] GPLinearODEMaker v0.1.1
[42fd0dbc] IterativeSolvers v0.8.4
[692b3bcd] JLLWrappers v1.1.3
[682c06a0] JSON v0.21.1
[69de0a69] Parsers v1.0.11
[3cdcf5f2] RecipesBase v0.8.0
[276daf66] SpecialFunctions v0.10.3
[123dc426] SymEngine v0.6.0
[e66e0078] CompilerSupportLibraries_jll v0.3.4+0
[efe28fd5] OpenSpecFun_jll v0.5.3+4
[0dad84c5] ArgTools
[56f22d72] Artifacts
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[f43a241f] Downloads
[b77e0a4c] InteractiveUtils
[b27032c2] LibCURL
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[fa267f1f] TOML
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
[deac9b47] LibCURL_jll
[14a3606d] MozillaCACerts_jll
Testing Running tests...
WARNING: importing deprecated binding Compat.invokelatest into SymEngine.
WARNING: Compat.MathConstants is deprecated, use Base.MathConstants instead.
likely near /home/pkgeval/.julia/packages/SymEngine/5PS4m/src/SymEngine.jl:6
WARNING: Compat.MathConstants is deprecated, use Base.MathConstants instead.
likely near /home/pkgeval/.julia/packages/SymEngine/5PS4m/src/SymEngine.jl:6
WARNING: Compat.MathConstants is deprecated, use Base.MathConstants instead.
likely near /home/pkgeval/.julia/packages/SymEngine/5PS4m/src/SymEngine.jl:6
WARNING: Compat.MathConstants is deprecated, use Base.MathConstants instead.
likely near /home/pkgeval/.julia/packages/SymEngine/5PS4m/src/SymEngine.jl:6
WARNING: importing deprecated binding Compat.LinearAlgebra into SymEngine.
WARNING: importing deprecated binding Compat.Libdl into SymEngine.
WARNING: Compat.LinearAlgebra is deprecated, use LinearAlgebra instead.
likely near /home/pkgeval/.julia/packages/SymEngine/5PS4m/src/dense-matrix.jl:162
WARNING: Compat.LinearAlgebra is deprecated, use LinearAlgebra instead.
likely near /home/pkgeval/.julia/packages/SymEngine/5PS4m/src/dense-matrix.jl:166
WARNING: Compat.LinearAlgebra is deprecated, use LinearAlgebra instead.
likely near /home/pkgeval/.julia/packages/SymEngine/5PS4m/src/dense-matrix.jl:168
WARNING: Compat.LinearAlgebra is deprecated, use LinearAlgebra instead.
likely near /home/pkgeval/.julia/packages/SymEngine/5PS4m/src/dense-matrix.jl:168
Testing...
ridge size: 10^-2.534759219329087
max value of array: 10^1.9444826721501687
Test Summary: | Pass Total
cholesky factorizations | 3 3
mismatch df/dθ1
nlogL derivatives: Test Failed at /home/pkgeval/.julia/packages/GPLinearODEMaker/MH4ed/test/runtests.jl:34
Expression: GLOM.test_∇nlogL_GLOM(prob_def, 1 .+ rand(n_kern_hyper), print_stuff = false)
Stacktrace:
[1] macro expansion
@ ~/.julia/packages/GPLinearODEMaker/MH4ed/test/runtests.jl:34 [inlined]
[2] macro expansion
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1144 [inlined]
[3] top-level scope
@ ~/.julia/packages/GPLinearODEMaker/MH4ed/test/runtests.jl:19
Test Summary: | Pass Fail Total
nlogL derivatives | 2 1 3
ERROR: LoadError: Some tests did not pass: 2 passed, 1 failed, 0 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/GPLinearODEMaker/MH4ed/test/runtests.jl:18
ERROR: Package GPLinearODEMaker errored during testing
Stacktrace:
[1] pkgerror(msg::String)
@ Pkg.Types /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Types.jl:52
[2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing)
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1651
[3] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:334
[4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:321
[5] #test#62
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:71 [inlined]
[6] test
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:70 [inlined]
[7] #test#61
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:68 [inlined]
[8] test
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:68 [inlined]
[9] test(pkg::String; kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:67
[10] test(pkg::String)
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:67
[11] top-level scope
@ none:35