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1.6.0-DEV-bac321d949.log
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Current time is 2020-10-26T09:44:12.914
Julia Version 1.6.0-DEV.1331
Commit bac321d949 (2020-10-25 22:53 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: AMD EPYC 7502 32-Core Processor
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-11.0.0 (ORCJIT, znver2)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
JULIA_MAX_NUM_PRECOMPILE_FILES = 9223372036854775807
JULIA_PKG_SERVER =
Starting installation at 2020-10-26T09:44:17.706
Resolving package versions...
Installed PooledArrays ──────────────── v0.5.3
Installed Compat ────────────────────── v3.22.0
Installed SentinelArrays ────────────── v1.2.16
Installed StructTypes ───────────────── v1.1.0
Installed JSON ──────────────────────── v0.21.1
Installed CancerImagingArchive ──────── v1.1.0
Installed CategoricalArrays ─────────── v0.8.3
Installed DataFrames ────────────────── v0.21.8
Installed Reexport ──────────────────── v0.2.0
Installed Missings ──────────────────── v0.4.4
Installed Tables ────────────────────── v1.1.0
Installed DataAPI ───────────────────── v1.3.0
Installed TableTraits ───────────────── v1.0.0
Installed Parsers ───────────────────── v1.0.11
Installed MbedTLS ───────────────────── v1.0.2
Installed SortingAlgorithms ─────────── v0.3.1
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed MbedTLS_jll ───────────────── v2.16.8+0
Installed OrderedCollections ────────── v1.3.1
Installed InvertedIndices ───────────── v1.0.0
Installed DataStructures ────────────── v0.18.8
Installed DataValueInterfaces ───────── v1.0.0
Installed IniFile ───────────────────── v0.5.0
Installed HTTP ──────────────────────── v0.8.19
Installed CSV ───────────────────────── v0.7.7
Updating `~/.julia/environments/v1.6/Project.toml`
[1c555f4c] + CancerImagingArchive v1.1.0
Updating `~/.julia/environments/v1.6/Manifest.toml`
[336ed68f] + CSV v0.7.7
[1c555f4c] + CancerImagingArchive v1.1.0
[324d7699] + CategoricalArrays v0.8.3
[34da2185] + Compat v3.22.0
[9a962f9c] + DataAPI v1.3.0
[a93c6f00] + DataFrames v0.21.8
[864edb3b] + DataStructures v0.18.8
[e2d170a0] + DataValueInterfaces v1.0.0
[cd3eb016] + HTTP v0.8.19
[83e8ac13] + IniFile v0.5.0
[41ab1584] + InvertedIndices v1.0.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.1
[739be429] + MbedTLS v1.0.2
[e1d29d7a] + Missings v0.4.4
[bac558e1] + OrderedCollections v1.3.1
[69de0a69] + Parsers v1.0.11
[2dfb63ee] + PooledArrays v0.5.3
[189a3867] + Reexport v0.2.0
[91c51154] + SentinelArrays v1.2.16
[a2af1166] + SortingAlgorithms v0.3.1
[856f2bd8] + StructTypes v1.1.0
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v1.1.0
[c8ffd9c3] + MbedTLS_jll v2.16.8+0
[0dad84c5] + ArgTools
[56f22d72] + Artifacts
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[f43a241f] + Downloads
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[b27032c2] + LibCURL
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[fa267f1f] + TOML
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
[deac9b47] + LibCURL_jll
[14a3606d] + MozillaCACerts_jll
Precompiling project... (tip: to disable auto-precompilation set ENV["JULIA_PKG_PRECOMPILE_AUTO"]=0)
[32m ✓ [39m[90mIteratorInterfaceExtensions[39m
[32m ✓ [39m[90mDataAPI[39m
[32m ✓ [39m[90mReexport[39m
[32m ✓ [39m[90mIniFile[39m
[32m ✓ [39m[90mDataValueInterfaces[39m
[32m ✓ [39m[90mInvertedIndices[39m
[32m ✓ [39m[90mTableTraits[39m
[32m ✓ [39m[90mStructTypes[39m
[32m ✓ [39m[90mOrderedCollections[39m
[32m ✓ [39m[90mCompat[39m
[32m ✓ [39m[90mPooledArrays[39m
[32m ✓ [39m[90mMissings[39m
[32m ✓ [39m[90mSentinelArrays[39m
[32m ✓ [39m[90mMbedTLS_jll[39m
[32m ✓ [39m[90mParsers[39m
[32m ✓ [39m[90mTables[39m
[32m ✓ [39m[90mJSON[39m
[32m ✓ [39m[90mMbedTLS[39m
[32m ✓ [39m[90mDataStructures[39m
[32m ✓ [39m[90mCategoricalArrays[39m
[32m ✓ [39m[90mHTTP[39m
[32m ✓ [39m[90mSortingAlgorithms[39m
[32m ✓ [39m[90mDataFrames[39m
[32m ✓ [39m[90mCSV[39m
[32m ✓ [39mCancerImagingArchive
25 dependencies successfully precompiled
Starting tests at 2020-10-26T09:57:00.425
Testing CancerImagingArchive
Status `/tmp/jl_ZfRWUW/Project.toml`
[336ed68f] CSV v0.7.7
[1c555f4c] CancerImagingArchive v1.1.0
[a93c6f00] DataFrames v0.21.8
[cd3eb016] HTTP v0.8.19
[682c06a0] JSON v0.21.1
[8dfed614] Test
Status `/tmp/jl_ZfRWUW/Manifest.toml`
[336ed68f] CSV v0.7.7
[1c555f4c] CancerImagingArchive v1.1.0
[324d7699] CategoricalArrays v0.8.3
[34da2185] Compat v3.22.0
[9a962f9c] DataAPI v1.3.0
[a93c6f00] DataFrames v0.21.8
[864edb3b] DataStructures v0.18.8
[e2d170a0] DataValueInterfaces v1.0.0
[cd3eb016] HTTP v0.8.19
[83e8ac13] IniFile v0.5.0
[41ab1584] InvertedIndices v1.0.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.1
[739be429] MbedTLS v1.0.2
[e1d29d7a] Missings v0.4.4
[bac558e1] OrderedCollections v1.3.1
[69de0a69] Parsers v1.0.11
[2dfb63ee] PooledArrays v0.5.3
[189a3867] Reexport v0.2.0
[91c51154] SentinelArrays v1.2.16
[a2af1166] SortingAlgorithms v0.3.1
[856f2bd8] StructTypes v1.1.0
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v1.1.0
[c8ffd9c3] MbedTLS_jll v2.16.8+0
[0dad84c5] ArgTools
[56f22d72] Artifacts
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[f43a241f] Downloads
[9fa8497b] Future
[b77e0a4c] InteractiveUtils
[b27032c2] LibCURL
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[fa267f1f] TOML
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
[deac9b47] LibCURL_jll
[14a3606d] MozillaCACerts_jll
Testing Running tests...
Queries - Collection: Error During Test at /home/pkgeval/.julia/packages/CancerImagingArchive/grAIZ/test/runtests.jl:66
Got exception outside of a @test
MethodError: no method matching typesubtract(::Type{Union{}}, ::Type{Int64})
Closest candidates are:
typesubtract(::Any, ::Any, !Matched::Int64) at compiler/typeutils.jl:66
Stacktrace:
[1] ts(T::Type, S::Type)
@ CSV ~/.julia/packages/CSV/MKemC/src/utils.jl:214
[2] nonstandardtype(T::Type)
@ CSV ~/.julia/packages/CSV/MKemC/src/utils.jl:217
[3] (::CSV.var"#17#23")(T::Type)
@ CSV ./none:0
[4] iterate(::Base.Iterators.Filter{CSV.var"#17#23", Vector{Type}})
@ Base.Iterators ./iterators.jl:451
[5] iterate
@ ./generator.jl:44 [inlined]
[6] Header
@ ~/.julia/packages/CSV/MKemC/src/header.jl:232 [inlined]
[7] CSV.File(source::Vector{UInt8}; header::Int64, normalizenames::Bool, datarow::Int64, skipto::Nothing, footerskip::Int64, transpose::Bool, comment::Nothing, use_mmap::Nothing, ignoreemptylines::Bool, select::Nothing, drop::Nothing, missingstrings::Vector{String}, missingstring::String, delim::Nothing, ignorerepeated::Bool, quotechar::Char, openquotechar::Nothing, closequotechar::Nothing, escapechar::Char, dateformat::Nothing, dateformats::Nothing, decimal::UInt8, truestrings::Vector{String}, falsestrings::Vector{String}, type::Nothing, types::Nothing, typemap::Dict{Type, Type}, categorical::Nothing, pool::Float64, lazystrings::Bool, strict::Bool, silencewarnings::Bool, debug::Bool, parsingdebug::Bool, kw::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ CSV ~/.julia/packages/CSV/MKemC/src/file.jl:216
[8] CSV.File(source::Vector{UInt8})
@ CSV ~/.julia/packages/CSV/MKemC/src/file.jl:216
[9] _request_csv(url::String)
@ CancerImagingArchive ~/.julia/packages/CancerImagingArchive/grAIZ/src/CancerImagingArchive.jl:273
[10] request(endpoint::String, query::Dict{String, String}; file::String)
@ CancerImagingArchive ~/.julia/packages/CancerImagingArchive/grAIZ/src/CancerImagingArchive.jl:259
[11] request
@ ~/.julia/packages/CancerImagingArchive/grAIZ/src/CancerImagingArchive.jl:254 [inlined]
[12] tcia_collections(; format::String)
@ CancerImagingArchive ~/.julia/packages/CancerImagingArchive/grAIZ/src/CancerImagingArchive.jl:54
[13] tcia_collections()
@ CancerImagingArchive ~/.julia/packages/CancerImagingArchive/grAIZ/src/CancerImagingArchive.jl:50
[14] macro expansion
@ ~/.julia/packages/CancerImagingArchive/grAIZ/test/runtests.jl:68 [inlined]
[15] macro expansion
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1144 [inlined]
[16] top-level scope
@ ~/.julia/packages/CancerImagingArchive/grAIZ/test/runtests.jl:67
[17] include(fname::String)
@ Base.MainInclude ./client.jl:444
[18] top-level scope
@ none:6
[19] eval(m::Module, e::Any)
@ Core ./boot.jl:360
[20] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:261
[21] _start()
@ Base ./client.jl:485
Test Summary: | Pass Error Total
Queries - Collection | 1 1 2
ERROR: LoadError: Some tests did not pass: 1 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/CancerImagingArchive/grAIZ/test/runtests.jl:66
ERROR: Package CancerImagingArchive errored during testing
Stacktrace:
[1] pkgerror(msg::String)
@ Pkg.Types /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Types.jl:52
[2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing)
@ Pkg.Operations /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1651
[3] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:334
[4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec})
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:321
[5] #test#62
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:71 [inlined]
[6] test
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:70 [inlined]
[7] #test#61
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:68 [inlined]
[8] test
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:68 [inlined]
[9] test(pkg::String; kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:67
[10] test(pkg::String)
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:67
[11] top-level scope
@ none:35