run_pytest_endtoend.yml

name: Run end-to-end suites for full pipeline coverage
on:
  pull_request:
    paths:
      - 'matsciml/**'
      - 'pyproject.toml'
      - 'conda.yml'
      - 'setup.py'
  push:
    branches:
      - main
  workflow_dispatch:
jobs:
  end-to-end-pytest:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
      - name: Create micromamba env
        uses: mamba-org/setup-micromamba@v1
        with:
          micromamba-version: '1.5.7-0'
          environment-file: conda.yml
          init-shell: >-
            bash
          cache-environment: true
          post-cleanup: 'all'
          generate-run-shell: true
      - name: Install current version of matsciml
        run: |
          pip install .
        shell: micromamba-shell {0}
      - name: Install PyTest
        run: |
          pip install pytest pytest-dependency
        shell: micromamba-shell {0}
      - name: Print out environment
        run: |
          micromamba env export && pip freeze
        shell: micromamba-shell {0}
      - name: Run pytest in models
        run: |
          pytest -v -m "not lmdb and not slow and not remote_request" ./matsciml/tests
        shell: micromamba-shell {0}