Demo datasets used for workflow examples and tutorials for the Spectre R package. Main page: https://immunedynamics.github.io/spectre/
Datasets:
demo.start.RData: flow cytometry data
demo.asinh.RData: flow cytometry data with arcsinh transformed values
demo.clustered.RData: flow cytometry data with arcsinh transformed values, clustering, UMAP coordinates, and annotated cell types
demo.batches.1.RData: flow cytometry data multiple batches
demo.exp.RData: summarised expression values per cluster
demo.sum.RData: summarised population data (cells per population per sample, etc)
Example:
In R, run load(url("https://github.com/ImmuneDynamics/data/blob/main/demo.clustered.RData?raw=TRUE"))
An object called demo.clustered should appear in your global environment.