From f87e5106f97bda8d2ba7a4f2eaa1fcb8ab6bfeb1 Mon Sep 17 00:00:00 2001 From: Givanna Putri Date: Fri, 24 May 2024 11:49:34 +1000 Subject: [PATCH] readded pages --- spectre/protocols-cytometry.md | 2 +- team/givanna-putri/gp.md | 33 +++++++++++++++++++++++++++++++++ 2 files changed, 34 insertions(+), 1 deletion(-) create mode 100644 team/givanna-putri/gp.md diff --git a/spectre/protocols-cytometry.md b/spectre/protocols-cytometry.md index 7307bf0a..c031644b 100644 --- a/spectre/protocols-cytometry.md +++ b/spectre/protocols-cytometry.md @@ -165,7 +165,7 @@ This protocol page contains reproducible workflows for different types of cytome

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diff --git a/team/givanna-putri/gp.md b/team/givanna-putri/gp.md new file mode 100644 index 00000000..e2e5c61c --- /dev/null +++ b/team/givanna-putri/gp.md @@ -0,0 +1,33 @@ +--- +layout: page +title: Givanna Putri - Profile +permalink: /givanna-putri/ +--- + +--- + +
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+ +Givanna Putri is a post-doctoral researcher at Walter and Eliza Hall Institute of Medical Research (WEHI). +She is a computer scientist, and has extensive experience in developing and applying machine learning (ML) algorithms to analyse multi-omics data. +Her work focuses heavily on developing and applying ML algorithms to uncover biological insights from multi-omics datasets, including cytometry, scRNAseq, and spatial transcriptomics. + +Givanna was awarded her PhD in Computer Science in 2021 from the University of Sydney. +During her PhD, she developed algorithms to cluster and track cellular populations development in time-course high dimensional cytometry data. +This included the TrackSOM algorithm which was used to profile [SARS-CoV-2/COVID-19](https://immunedynamics.io/research/disease) patients, and the [ChronoClust](https://github.com/ghar1821/Chronoclust) algorithm which publication on the Knowledge Based System journal won the Dolby scientific paper competition in 2019. +She also developed a novel benchmarking methodology [ParetoBench](https://github.com/ghar1821/ParetoBench) which uses the Pareto Front framework to fairly compare the performances of clustering algorithms using several performance metrics. +Her PhD research was funded by The Australian Government Research Training Program Scholarship and The University of Sydney Alumni Scholarship. + +In her current role as a postdoc at WEHI, she developed an R package [SuperCellCyto](https://phipsonlab.github.io/SuperCellCyto/) to reduce the size of cytometry data while minimising the loss in biological heterogeneity. +She was awarded a travel award by the CASS foundation to present SuperCellCyto at the recent CYTO 2024 conference. + +**Sites and academic profiles** + +   Logo [Google Scholar](http://scholar.google.com/citations?user=S-sNLPIAAAAJ&hl=en)
+   Github logo [Github](https://github.com/ghar1821)