derivatives.json

{
    "name": "derivatives",
    "entities": [
        {
            "name": "atlas",
            "pattern": "atlas-([a-zA-Z0-9]+)"
        },
        {
            "name": "roi",
            "pattern": "roi-([a-zA-Z0-9]+)"
        },
        {
            "name": "label",
            "pattern": "label-([a-zA-Z0-9]+)"
        },
        {
            "name": "desc",
            "pattern": "desc-([a-zA-Z0-9]+)"
        },
        {
            "name": "from",
            "pattern": "(?:^|_)from-([a-zA-Z0-9]+).*xfm"
        },
        {
            "name": "to",
            "pattern": "(?:^|_)to-([a-zA-Z0-9]+).*xfm"
        },
        {
            "name": "mode",
            "pattern": "(?:^|_)mode-([a-zA-Z0-9]+).*xfm"
        },
        {
            "name": "hemi",
            "pattern": "hemi-(L|R)"
        },
        {
            "name": "res",
            "pattern": "res-([a-zA-Z0-9]+)"
        },
        {
            "name": "den",
            "pattern": "den-([a-zA-Z0-9]+)"
        },
        {
            "name": "model",
            "pattern": "model-([a-zA-Z0-9]+)"
        },
        {
            "name": "subset",
            "pattern": "subset-([a-zA-Z0-9]+)"
        }
    ],

    "default_path_patterns": [
        "sub-{subject}[/ses-{session}]/{datatype<anat>|anat}/sub-{subject}[_ses-{session}][_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}][_space-{space}][_desc-{desc}]_{suffix<T1w|T2w|T1rho|T1map|T2map|T2star|FLAIR|FLASH|PDmap|PD|PDT2|inplaneT[12]|angio>}{extension<.nii|.nii.gz|.json>|.nii.gz}",
        "sub-{subject}[/ses-{session}]/{datatype<anat>|anat}/sub-{subject}[_ses-{session}][_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}][_mod-{modality}][_space-{space}][_desc-{desc}]_{suffix<defacemask>}{extension<.nii|.nii.gz|.json>|.nii.gz}",
        "sub-{subject}[/ses-{session}]/{datatype<anat>|anat}/sub-{subject}[_ses-{session}][_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}][_space-{space}][_res-{res}][_den-{den}][_label-{label}][_desc-{desc}]_{suffix<mask>}{extension<.nii|.nii.gz|.json>|.nii.gz}",
        "sub-{subject}[/ses-{session}]/{datatype<func>|func}/sub-{subject}[_ses-{session}]_task-{task}[_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}][_dir-{direction}][_run-{run}][_echo-{echo}][_space-{space}][_desc-{desc}]_{suffix<bold|cbv|phase|sbref>}{extension<.nii|.nii.gz|.json>|.nii.gz}",
        "sub-{subject}[/ses-{session}]/{datatype<func>|func}/sub-{subject}[_ses-{session}]_task-{task}[_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}][_dir-{direction}][_run-{run}][_echo-{echo}][_space-{space}][_res-{res}][_den-{den}][_label-{label}][_desc-{desc}]_{suffix<mask>}{extension<.nii|.nii.gz|.json>|.nii.gz}",
        "sub-{subject}[/ses-{session}]/{datatype<dwi>|dwi}/sub-{subject}[_ses-{session}][_acq-{acquisition}][_space-{space}][_desc-{desc}]_{suffix<dwi>}{extension<bval|bvec|.json|.nii.gz|.nii>|.nii.gz}",
        "sub-{subject}[/ses-{session}]/{datatype<dwi>|dwi}/sub-{subject}[_ses-{session}][_acq-{acquisition}][_space-{space}][_res-{res}][_den-{den}][_label-{label}][_desc-{desc}]_{suffix<mask>}{extension<.nii|.nii.gz|.json>|.nii.gz}",
        "sub-{subject}[/ses-{session}]/{datatype<fmap>|fmap}/sub-{subject}[_ses-{session}][_acq-{acquisition}][_dir-{direction}][_run-{run}][_space-{space}][_desc-{desc}]_{fmap<phasediff|magnitude[12]|phase[12]|fieldmap>}{extension<.nii|.nii.gz|.json>|.nii.gz}",
        "sub-{subject}[/ses-{session}]/{datatype<fmap>|fmap}/sub-{subject}[_ses-{session}][_acq-{acquisition}][_ce-{ceagent}]_dir-{direction}[_run-{run}][_space-{space}][_desc-{desc}]_{fmap<epi>}{extension<.nii|.nii.gz|.json>|.nii.gz}",
        "[acq-{acquisition}_][ce-{ceagent}_][rec-{reconstruction}_]{suffix<T1w|T2w|T1rho|T1map|T2map|T2star|FLAIR|FLASH|PDmap|PD|PDT2|inplaneT[12]|angio>}{extension<.json>|.json}",
        "[acq-{acquisition}_][ce-{ceagent}_][rec-{reconstruction}_][space-{space}_][res-{res}_][den-{den}_][label-{label}_][desc-{desc}_]{suffix<mask>}{extension<.nii|.nii.gz|.json>|.nii.gz}",
        "[acq-{acquisition}_][ce-{ceagent}_][rec-{reconstruction}_][mod-{modality}_][space-{space}_][desc-{desc}_]{suffix<defacemask>}{extension<.json>|.json}",
        "task-{task}[_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}][_dir-{direction}][_run-{run}][_echo-{echo}][_space-{space}][_desc-{desc}]_{suffix<bold|cbv|phase|sbref>}{extension<.json>|.json}",
        "task-{task}[_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}][_dir-{direction}][_run-{run}][_echo-{echo}][_space-{space}][_res-{res}][_den-{den}][_label-{label}][_desc-{desc}]_{suffix<mask>}{extension<.nii|.nii.gz|.json>|.nii.gz}",
        "[acq-{acquisition}_][space-{space}_][desc-{desc}_]{suffix<dwi>}{extension<.json>|.json}",
        "[acq-{acquisition}_][space-{space}_][res-{res}_][den-{den}_][label-{label}_][desc-{desc}_]{suffix<mask>}{extension<.nii|.nii.gz|.json>|.nii.gz}",
        "[acq-{acquisition}_][dir-{direction}_][run-{run}_][space-{space}_][desc-{desc}_]{fmap<phasediff|magnitude[1-2]|phase[1-2]|fieldmap>}{extension<.json>|.json}",
        "[acq-{acquisition}_][ce-{ceagent}_]dir-{direction}[_run-{run}][_space-{space}][_desc-{desc}]_{fmap<epi>}{extension<.json>|.json}",
        "task-{task}[_acq-{acquisition}][_rec-{reconstruction}][_run-{run}][_echo-{echo}][_recording-{recording}][_desc-{desc}]_{suffix<events>}{extension<.json>|.json}"
    ]
}