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pyproject.toml
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pyproject.toml
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[tool.poetry]
name = "LipidTA"
version = "3.0.1"
packages=[{include = "lta"}]
description = "Lipid Traffic Analysis"
license = "MIT"
authors = ["rbpatt2019 <[email protected]>"]
readme = "README.md"
repository = "https://github.com/IMS-Bio2Core-Facility/LTA"
documentation = "https://LTA.readthedocs.io/en/latest/"
homepage = ""
classifiers = [
"Development Status :: 4 - Beta",
"License :: OSI Approved :: MIT License",
"Programming Language :: Python",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.8",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Environment :: Console",
"Intended Audience :: Science/Research",
"Operating System :: OS Independent",
"Topic :: Scientific/Engineering",
"Topic :: Scientific/Engineering :: Bio-Informatics",
"Typing :: Typed",
]
[tool.poetry.dependencies]
python = ">=3.8.0,<3.11"
ConfigArgParse = "^1.5"
pandas = "^1.3"
numpy = "^1.22.2"
boolean-jaccard = "^0.1.1"
[tool.poetry.dev-dependencies]
nox = "^2022"
pre-commit = "^2.13.0"
commitizen = "^2.17.13"
pytest = "^7.1"
pytest-xdist = "2.5.0"
pytest-clarity = "^1.0.1"
pytest-sugar = "^0"
coverage = "^6.2"
pytest-cov = "^3.0.0"
pytest-mock = "^3.6.1"
xdoctest = "^1.0.0"
flake8 = "^4.0.1"
pyproject-flake8 = "^0.0.1a4"
flake8-annotations = "^2.6.2"
flake8-bandit = "^3.0.0"
flake8-bugbear = "^22.4.5"
flake8-comprehensions = "^3.5.0"
flake8-docstrings = "^1.6.0"
flake8-pytest-style = "^1.5.0"
flake8-spellcheck = "^0"
darglint = "^1.8.0"
mypy = "^0"
isort = "^5.9.3"
black = "^22.3.0"
safety = "^1.10.3"
tomli = "^1.2.0"
Sphinx = "^4.1.2"
myst-parser = "^0"
sphinx-rtd-theme = "^1.0.0"
[tool.poetry.scripts]
lta = "lta.cli:main"
[tool.semantic_release]
branch = "main"
version_variable = [
"lta/__init__.py:__version__",
"docs/conf.py:version"
]
version_toml = [
"pyproject.toml:tool.poetry.version"
]
changelog_file = "CHANGELOG.md"
upload_to_pypi = true
upload_to_release = true
build_command = "poetry build"
[tool.coverage.run]
branch = true
source = ["lta"]
[tool.coverage.report]
show_missing = true
[tool.pytest.ini_options]
addopts = """
-n auto
-vv
--ignore=docs
--xdoctest
--cov=lta
--cov-report=term
--cov-report=xml
"""
[tool.isort]
profile = "black"
skip_gitignore = true
float_to_top = false
[tool.flake8]
select = "ANN,B,B9,C,C4,D,DAR,F,S,SC"
ignore = "ANN101,S101,B950"
exclude = "docs/conf.py"
max-line-length = 88
max-complexity = 10
docstring-convention = "numpy"
docstring-style = "numpy"
strictness = "short"
dictionaries = "en_US,python,technical"
spellcheck-targets = "comments"
[build-system]
requires = ["setuptools", "poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"